Rroxscaffold_4G00286410
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
7453815 .. 7454594
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286410.1

Sequence Viewer

Length: 780 bp
ATGAGCGGCGGTGGTGATAATAGAGTGAAGGGGTCGTGGAGTCCTCAGGAGGACGCAACGCTGATCAAGCTGGTGGCGGAGCACGGCCCGCGCAACTGGTCCTTGATCAGCTCCGGCATCCCCGGCCGGTCCGGCAAGTCGTGTAGGCTCAGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACAAGCCGTTCTCGCCGGCCGAGGACGACGCGATCGTCCGGGCACACGCGCTCCACGGCAACAAGTGGGCCACCATCGCCCGGCTCCTCCCCGGCCGCACCGACAATGCCATCAAGAACCACTGGAACTCCACGCTCCGGCGGCGGAGGCTGGCCGAGTCGAGCTCGGCCTCTTCCGAGTCCAACTCGGCCGCGTTGAAGCGGTTGATTGGCGCCACGTCGGACGACCCGGAGATGAAGCGGCAGTGCTTGCGTGGGGCGTTGGCGGAGGAGGACAGTTTCAAAGCGGTTGCGGCGGGAGTGGAGGGTGTGCTGACGTCACTGACGCTGTCCCCGCCTGGGGAGAAAGTGGAAAACGAGGTCGTTTTGAAGAGTGAGGAGGTTGGCGAGGACGACGAAGAGGACAATGATGATCATCAAGAGGAGGCAGCGGATGACGAGGAGAAATGTACGGTGGAGATGGAGGAGACGTGTCTGATGACGATGATGCAGCGGATGATAGCCCAGGAGGTGAGGAACTACATCGAGAGCTTACGGGCCGAGAATGGGCTAGCATTTGGGCTACAGTCGACGGTCCAAAATGATCCCAAATGTTGA

Protein Analysis

259

Amino Acids

28.46

Weight (kDa)

5.01

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 56 2.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 13 - 71 2.3e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 63 - 106 2.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 110 2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014803)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 752
AccII CGCG 4 cut(s) 91, 215, 233, 377
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 5 cut(s) 124, 201, 277, 336, 372
AcyI GRCGYC 2 cut(s) 396, 500
AfaI GTAC 1 cut(s) 634
AfiI CCNNNNNNNGG 5 cut(s) 264, 321, 522, 523, 729
AflIII ACRYGT 1 cut(s) 653
AgsI TTSAA 3 cut(s) 382, 466, 553
AjiI CACGTC 3 cut(s) 178, 402, 654
AjnI CCWGG 2 cut(s) 520, 687
AluBI AGCT 5 cut(s) 70, 111, 166, 348, 714
AluI AGCT 5 cut(s) 70, 111, 166, 348, 714
Alw21I GWGCWC 2 cut(s) 84, 350
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 1 cut(s) 761
AoxI GGCC 9 cut(s) 85, 124, 201, 252, 277, 336, 351, 372, 720
ApeKI GCWGC 3 cut(s) 181, 611, 673
AspLEI GCGC 3 cut(s) 93, 235, 398
AspS9I GGNCC 6 cut(s) 86, 99, 129, 252, 720, 757
AsuC2I CCSGG 5 cut(s) 123, 224, 265, 276, 413
AsuHPI GGTGA 2 cut(s) 26, 706
AsuNHI GCTAGC 1 cut(s) 733
AvaII GGWCC 3 cut(s) 99, 129, 757
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 84, 350
BbvI GCAGC 3 cut(s) 193, 623, 685
BccI CCATC 3 cut(s) 266, 302, 637
BceAI ACGGC 3 cut(s) 100, 175, 256
BciT130I CCWGG 2 cut(s) 522, 689
BclI TGATCA 3 cut(s) 63, 105, 595
BcnI CCSGG 5 cut(s) 123, 224, 265, 276, 413
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 399
BglI GCCNNNNNGGC 1 cut(s) 132
BisI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 612, 674
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 9 cut(s) 8, 183, 281, 327, 376, 426, 478, 613, 675
Bme1390I CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 689
Bme18I GGWCC 3 cut(s) 99, 129, 757
BmgBI CACGTC 3 cut(s) 178, 402, 654
BmgT120I GGNCC 6 cut(s) 86, 99, 129, 252, 720, 757
BmiI GGNNCC 2 cut(s) 269, 397
BmrFI CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 689
BmsI GCATC 2 cut(s) 126, 660
BmtI GCTAGC 1 cut(s) 737
BplI GAGNNNNNCTC 4 cut(s) 332, 364, 353, 385
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 167
BpuMI CCSGG 5 cut(s) 123, 224, 265, 276, 413
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 2 cut(s) 396, 500
BsaJI CCNNGG 6 cut(s) 121, 204, 238, 274, 521, 687
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 296, 326, 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 321, 522, 523, 729
Bse118I RCCGGY 2 cut(s) 126, 199
Bse1I ACTGG 2 cut(s) 101, 311
Bse21I CCTNAGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 2 cut(s) 522, 689
BseDI CCNNGG 6 cut(s) 121, 204, 238, 274, 521, 687
BseGI GGATG 3 cut(s) 117, 622, 684
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 5 cut(s) 264, 321, 522, 523, 729
BseMII CTCAG 3 cut(s) 59, 163, 181
BseNI ACTGG 2 cut(s) 101, 311
BseRI GAGGAG 6 cut(s) 260, 467, 575, 620, 638, 662
BseSI GKGCMC 1 cut(s) 229
BseX3I CGGCCG 4 cut(s) 124, 201, 277, 372
BseXI GCAGC 3 cut(s) 193, 623, 685
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 4 cut(s) 91, 215, 233, 377
Bsh1285I CGRYCG 5 cut(s) 127, 204, 219, 280, 375
BshFI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 722
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 5 cut(s) 127, 204, 219, 280, 375
BsiHKAI GWGCWC 2 cut(s) 84, 350
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 5 cut(s) 264, 321, 522, 523, 729
BsmAI GTCTC 1 cut(s) 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 722
Bsp1286I GDGCHC 3 cut(s) 84, 229, 350
Bsp143I GATC 5 cut(s) 63, 105, 216, 595, 766
Bsp1720I GCTNAGC 1 cut(s) 167
BspANI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 722
BspCNI CTCAG 3 cut(s) 58, 162, 180
BspFNI CGCG 4 cut(s) 91, 215, 233, 377
BspLI GGNNCC 2 cut(s) 269, 397
BspOI GCTAGC 1 cut(s) 737
BspPI GGATC 1 cut(s) 761
BspT107I GGYRCC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 2 cut(s) 126, 199
BsrI ACTGG 2 cut(s) 101, 311
BssAI RCCGGY 2 cut(s) 126, 199
BssECI CCNNGG 6 cut(s) 121, 204, 238, 274, 521, 687
BssMI GATC 5 cut(s) 63, 105, 216, 595, 766
BssNI GRCGYC 2 cut(s) 396, 500
Bst2UI CCWGG 2 cut(s) 522, 689
Bst4CI ACNGT 4 cut(s) 461, 637, 750, 757
Bst6I CTCTTC 3 cut(s) 361, 548, 576
BstACI GRCGYC 2 cut(s) 396, 500
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 5 cut(s) 89, 201, 336, 434, 735
BstDEI CTNAG 3 cut(s) 45, 149, 167
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 117, 622, 684
BstFNI CGCG 4 cut(s) 91, 215, 233, 377
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 93, 235, 398
BstKTI GATC 5 cut(s) 66, 108, 219, 598, 769
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 5 cut(s) 63, 105, 216, 595, 766
BstMCI CGRYCG 5 cut(s) 127, 204, 219, 280, 375
BstNI CCWGG 2 cut(s) 522, 689
BstSCI CCNGG 7 cut(s) 121, 222, 263, 274, 411, 520, 687
BstSFI CTRYAG 1 cut(s) 746
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 4 cut(s) 91, 215, 233, 377
BstV1I GCAGC 3 cut(s) 193, 623, 685
BstZI CGGCCG 4 cut(s) 124, 201, 277, 372
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 722
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 244
BtrI CACGTC 3 cut(s) 178, 402, 654
BtsCI GGATG 3 cut(s) 117, 622, 684
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 3 cut(s) 304, 434, 503
Cac8I GCNNGC 5 cut(s) 89, 201, 336, 434, 735
CfoI GCGC 3 cut(s) 93, 235, 398
Cfr10I RCCGGY 2 cut(s) 126, 199
Cfr13I GGNCC 6 cut(s) 86, 99, 129, 252, 720, 757
CpoI CGGWCCG 1 cut(s) 129
CseI GACGC 3 cut(s) 62, 221, 517
Csp6I GTAC 1 cut(s) 633
CspI CGGWCCG 1 cut(s) 129
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 3 cut(s) 45, 149, 167
DinI GGCGCC 1 cut(s) 397
DpnI GATC 5 cut(s) 65, 107, 218, 597, 768
DpnII GATC 5 cut(s) 63, 105, 216, 595, 766
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 5 cut(s) 124, 201, 277, 336, 372
EagI CGGCCG 4 cut(s) 124, 201, 277, 372
Eam1104I CTCTTC 3 cut(s) 361, 548, 576
EarI CTCTTC 3 cut(s) 361, 548, 576
EciI GGCGGA 3 cut(s) 92, 343, 464
Ecl136II GAGCTC 1 cut(s) 348
EclXI CGGCCG 4 cut(s) 124, 201, 277, 372
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 99, 129, 757
Eco52I CGGCCG 4 cut(s) 124, 201, 277, 372
Eco53kI GAGCTC 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 520, 687
EcoT38I GRGCYC 1 cut(s) 350
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 644
FaqI GGGAC 1 cut(s) 499
FauI CCCGC 3 cut(s) 96, 472, 525
FbaI TGATCA 3 cut(s) 63, 105, 595
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 612, 674
FokI GGATG 3 cut(s) 104, 629, 691
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 612, 674
FspBI CTAG 1 cut(s) 734
GlaI GCGC 3 cut(s) 92, 234, 397
GluI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 612, 674
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 9 cut(s) 87, 126, 203, 254, 279, 338, 353, 374, 722
HgaI GACGC 3 cut(s) 62, 221, 517
HhaI GCGC 3 cut(s) 93, 235, 398
Hin1I GRCGYC 2 cut(s) 396, 500
Hin6I GCGC 3 cut(s) 91, 233, 396
HinP1I GCGC 3 cut(s) 91, 233, 396
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 3 cut(s) 40, 341, 362
HphI GGTGA 2 cut(s) 26, 706
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 3 cut(s) 361, 406, 660
Hpy188III TCNNGA 4 cut(s) 47, 298, 602, 709
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 5 cut(s) 179, 215, 406, 581, 757
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 4 cut(s) 461, 637, 750, 757
HpyCH4IV ACGT 4 cut(s) 177, 401, 500, 653
HpyCH4V TGCA 3 cut(s) 159, 181, 673
HpyF3I CTNAG 3 cut(s) 45, 149, 167
HpySE526I ACGT 4 cut(s) 177, 401, 500, 653
Hsp92I GRCGYC 2 cut(s) 396, 500
HspAI GCGC 3 cut(s) 91, 233, 396
KasI GGCGCC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Ksp22I TGATCA 3 cut(s) 63, 105, 595
Kzo9I GATC 5 cut(s) 63, 105, 216, 595, 766
LmnI GCTCC 5 cut(s) 79, 116, 240, 273, 324
Lsp1109I GCAGC 3 cut(s) 193, 623, 685
LweI GCATC 2 cut(s) 126, 660
MaeI CTAG 1 cut(s) 734
MaeII ACGT 4 cut(s) 177, 401, 500, 653
MaeIII GTNAC 1 cut(s) 501
MalI GATC 5 cut(s) 65, 107, 218, 597, 768
MbiI CCGCTC 1 cut(s) 6
MboI GATC 5 cut(s) 63, 105, 216, 595, 766
MboII GAAGA 3 cut(s) 348, 565, 593
MhlI GDGCHC 3 cut(s) 84, 229, 350
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 3 cut(s) 49, 350, 371
MmeI TCCRAC 2 cut(s) 384, 390
MroNI GCCGGC 1 cut(s) 199
MspA1I CMGCKG 2 cut(s) 614, 676
MspR9I CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 689
MvaI CCWGG 2 cut(s) 522, 689
MvnI CGCG 4 cut(s) 91, 215, 233, 377
NaeI GCCGGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 396
NciI CCSGG 5 cut(s) 123, 224, 265, 276, 413
NdeII GATC 5 cut(s) 63, 105, 216, 595, 766
NgoMIV GCCGGC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 733
NlaIV GGNNCC 2 cut(s) 269, 397
NmeAIII GCCGAG 5 cut(s) 229, 329, 350, 364, 748
NmuCI GTSAC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 201
PflFI GACNNNGTC 1 cut(s) 511
PkrI GCNGC 9 cut(s) 8, 183, 281, 327, 376, 426, 478, 613, 675
Ple19I CGATCG 1 cut(s) 219
PleI GAGTC 3 cut(s) 48, 349, 370
PluTI GGCGCC 1 cut(s) 399
PpsI GAGTC 3 cut(s) 48, 349, 370
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 520, 687
PspGI CCWGG 2 cut(s) 520, 687
PspN4I GGNNCC 2 cut(s) 269, 397
PspPI GGNCC 6 cut(s) 86, 99, 129, 252, 720, 757
PsyI GACNNNGTC 1 cut(s) 511
PvuI CGATCG 1 cut(s) 219
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
Rsr2I CGGWCCG 1 cut(s) 129
RsrII CGGWCCG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 350
SalI GTCGAC 1 cut(s) 751
SatI GCNGC 9 cut(s) 7, 182, 280, 326, 375, 425, 477, 612, 674
Sau3AI GATC 5 cut(s) 63, 105, 216, 595, 766
Sau96I GGNCC 6 cut(s) 86, 99, 129, 252, 720, 757
SchI GAGTC 3 cut(s) 49, 350, 371
ScrFI CCNGG 7 cut(s) 123, 224, 265, 276, 413, 522, 689
SduI GDGCHC 3 cut(s) 84, 229, 350
SfaNI GCATC 2 cut(s) 126, 660
SfcI CTRYAG 1 cut(s) 746
SfoI GGCGCC 1 cut(s) 397
SinI GGWCC 3 cut(s) 99, 129, 757
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 1 cut(s) 734
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 7 cut(s) 121, 222, 263, 274, 411, 520, 687
TaaI ACNGT 4 cut(s) 461, 637, 750, 757
TaiI ACGT 4 cut(s) 180, 404, 503, 656
TaqI TCGA 3 cut(s) 344, 708, 752
TauI GCSGC 6 cut(s) 9, 282, 328, 377, 427, 479
TscAI CASTG 3 cut(s) 311, 434, 510
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 3 cut(s) 181, 611, 673
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 434
TspRI CASTG 3 cut(s) 311, 434, 510
Tth111I GACNNNGTC 1 cut(s) 511
VpaK11BI GGWCC 3 cut(s) 99, 129, 757
XmiI GTMKAC 1 cut(s) 752
XspI CTAG 1 cut(s) 734
ZraI GACGTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.