Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

19392552 .. 19397412

Gene Structure 4861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25371.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGTCCTCTGCTGTTCTCCGATCCCTCAACTGTTCTGTAGGCACAGTTTCGCAGATCCGCTCATTCATTGACAAGCCTGGTGTGCTTCCGGTGTATAATGCTAGAAGGCCTACCTATAGTAGATCGTATTTCCAAGGAATGATGGTTAGTGAGAAGTTCATCTATTCCCCACAAAAGCGGAAGGGAGTCCTAATATCATGTGTGAAGACAACAGAAGCTGCCAAAACTGAGAATTCCAGTGTTTTGTTGGATACTAAGTCAGAAAGCACATCAGAGGGCTCTCCTCAAAGCACTGTGTTTCCTAGTGGATATGAGGCACTGATGCTAGAAGTCTGTGACGAGACAGAGATTGCTGAACTGAAACTTAAGATTGGAGACTTTCAAATGCATATAAAGCGTAACATTGGAGCCACCAGTGCTCCCGTGTCTAACATCTCACCAACGGTAGCGCCACCTATTCCATCTCCACCGATGGCTGCATCAGCTCCTGCTCCCCCTCCAGCGGCACCAAAATCTTCTCCTGCCAAAGCCACTCCATTTAATAACGGTTCTGTAGCTAAGTCATCAAAATTAGCAGCATTGGAGGCTTCTGGATCTAATGGATATGTTCTGGTTACTTCTCCAACGGTTGGTTCATTCCGAAGGGGCAGAACGGTGAAAGGAAAGAAGCAACCTCCTATCTTTAACGAGGGTGATCTTATCAAAGAAGGACAAGTAATTGGATATGTGGATCAGTTTGGCACTGAACTTCCTGTTAAGACCGATGTGGGTGGAGAAGTTTTGAAGCTCCTATTCAATGACGGAGATGCTGTTGGTTACGGAGACGCACTTATTGCCGTCTTGCCGTCATTCCGCGGTATTGGTGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

292

Amino Acids

30.73

Weight (kDa)

8.99

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	63
AccII	CGCG	1 cut(s)	858
AciI	CCGC	5 cut(s)	61, 181, 506, 856, 858
AclWI	GGATC	4 cut(s)	18, 52, 604, 741
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	505, 632
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	386, 787, 799
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AluBI	AGCT	4 cut(s)	221, 488, 560, 790
AluI	AGCT	4 cut(s)	221, 488, 560, 790
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	3 cut(s)	338, 372, 819
AlwI	GGATC	4 cut(s)	18, 52, 604, 741
AlwNI	CAGNNNCTG	2 cut(s)	221, 491
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	221, 479, 578
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	432, 670, 707
BanI	GGYRCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	208, 466, 590
BccI	CCATC	3 cut(s)	139, 469, 472
BceAI	ACGGC	2 cut(s)	824, 832
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	338, 372, 819
BfaI	CTAG	3 cut(s)	105, 306, 329
BfmI	CTRYAG	3 cut(s)	39, 118, 555
BfoI	RGCGCY	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	222, 480, 507, 579
BlsI	GCNGC	4 cut(s)	223, 481, 508, 580
Bme1390I	CCNGG	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	412, 510
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	315, 491, 799
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	136, 856
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	406, 436, 798, 828
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 632
Bse1I	ACTGG	2 cut(s)	240, 417
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	136, 856
BseLI	CCNNNNNNNGG	2 cut(s)	505, 632
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	240, 417
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	208, 466, 590
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	505, 632
BsmAI	GTCTC	3 cut(s)	338, 372, 819
BsmBI	CGTCTC	1 cut(s)	819
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	284, 424
Bsp143I	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
BspACI	CCGC	5 cut(s)	61, 181, 506, 856, 858
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	858
BspLI	GGNNCC	2 cut(s)	412, 510
BspPI	GGATC	4 cut(s)	18, 52, 604, 741
BspT107I	GGYRCC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	240, 417
BssECI	CCNNGG	2 cut(s)	136, 856
BssMI	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	7 cut(s)	35, 49, 298, 448, 551, 631, 658
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstDEI	CTNAG	3 cut(s)	231, 258, 561
BstDSI	CCRYGG	1 cut(s)	856
BstFNI	CGCG	1 cut(s)	858
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	6 cut(s)	26, 60, 128, 599, 700, 736
BstMAI	GTCTC	3 cut(s)	338, 372, 819
BstMBI	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 397, 419, 485, 587, 836
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	3 cut(s)	39, 118, 555
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	3 cut(s)	208, 466, 590
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	57, 596
BstYI	RGATCY	2 cut(s)	57, 596
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	856
BtsIMutI	CAGTG	5 cut(s)	247, 294, 320, 424, 744
CaiI	CAGNNNCTG	2 cut(s)	221, 491
CfoI	GCGC	1 cut(s)	454
Cfr42I	CCGCGG	1 cut(s)	859
CseI	GACGC	1 cut(s)	836
CviAII	CATG	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	231, 258, 561
DpnI	GATC	6 cut(s)	25, 59, 127, 598, 699, 735
DpnII	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	1 cut(s)	204
FaiI	YATR	8 cut(s)	99, 120, 202, 315, 393, 395, 609, 729
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	4 cut(s)	222, 480, 507, 579
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	4 cut(s)	222, 480, 507, 579
FspBI	CTAG	3 cut(s)	105, 306, 329
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	4 cut(s)	222, 480, 507, 579
GsuI	CTGGAG	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	2 cut(s)	5, 189
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	432, 670, 707
Hpy188I	TCNGA	4 cut(s)	23, 265, 277, 644
Hpy188III	TCNNGA	1 cut(s)	594
HpyAV	CCTTC	4 cut(s)	102, 178, 639, 704
HpyCH4III	ACNGT	7 cut(s)	35, 49, 298, 448, 551, 631, 658
HpyCH4V	TGCA	2 cut(s)	391, 482
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 397, 419, 485, 587, 836
HpyF3I	CTNAG	3 cut(s)	231, 258, 561
Hsp92II	CATG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	452
KspI	CCGCGG	1 cut(s)	859
Kzo9I	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
LmnI	GCTCC	5 cut(s)	410, 427, 493, 499, 795
Lsp1109I	GCAGC	3 cut(s)	208, 466, 590
LweI	GCATC	3 cut(s)	315, 491, 799
MaeI	CTAG	3 cut(s)	105, 306, 329
MaeIII	GTNAC	4 cut(s)	338, 401, 616, 818
MalI	GATC	6 cut(s)	25, 59, 127, 598, 699, 735
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
MboII	GAAGA	2 cut(s)	220, 510
MflI	RGATCY	2 cut(s)	57, 596
MhlI	GDGCHC	2 cut(s)	284, 424
MluCI	AATT	3 cut(s)	235, 572, 720
MlyI	GAGTC	2 cut(s)	14, 198
MmeI	TCCRAC	2 cut(s)	231, 650
MnlI	CCTC	9 cut(s)	19, 38, 271, 297, 310, 510, 580, 685, 687
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	4 cut(s)	369, 543, 687, 759
MspA1I	CMGCKG	2 cut(s)	506, 858
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	6 cut(s)	85, 397, 419, 485, 587, 836
NdeII	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	2 cut(s)	412, 510
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	223, 481, 508, 580
PleI	GAGTC	2 cut(s)	13, 197
PpsI	GAGTC	2 cut(s)	13, 197
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	412, 510
PstNI	CAGNNNCTG	2 cut(s)	221, 491
PsuI	RGATCY	2 cut(s)	57, 596
SacII	CCGCGG	1 cut(s)	859
SaqAI	TTAA	4 cut(s)	369, 543, 687, 759
SatI	GCNGC	4 cut(s)	222, 480, 507, 579
Sau3AI	GATC	6 cut(s)	23, 57, 125, 596, 697, 733
SchI	GAGTC	2 cut(s)	14, 198
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	284, 424
SetI	ASST	7 cut(s)	119, 223, 460, 490, 562, 679, 792
SfaNI	GCATC	3 cut(s)	315, 491, 799
SfcI	CTRYAG	3 cut(s)	39, 118, 555
Sfr303I	CCGCGG	1 cut(s)	859
SgrBI	CCGCGG	1 cut(s)	859
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	235, 572, 720
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	5 cut(s)	61, 181, 506, 856, 858
SspMI	CTAG	3 cut(s)	105, 306, 329
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	7 cut(s)	35, 49, 298, 448, 551, 631, 658
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	3 cut(s)	235, 572, 720
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	4 cut(s)	369, 543, 687, 759
Tru9I	TTAA	4 cut(s)	369, 543, 687, 759
TscAI	CASTG	5 cut(s)	247, 301, 327, 424, 751
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	221, 479, 578
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	58, 151, 627
TspGWI	ACGGA	2 cut(s)	819, 837
TspRI	CASTG	5 cut(s)	247, 301, 327, 424, 751
Van91I	CCANNNNNTGG	1 cut(s)	632
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	105, 306, 329
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.