Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

62667354 .. 62672528

Gene Structure 5175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTTCCAGTGTATAATGCCAGAAGGCCTACCTCTAGTAGATCATATTTCCAAGGATTGATGGTTAGTGAGAAGTTCATTTATTCTCCACAAAAGCGGAAGGGAGTCCTAATATCATGTGTGAAGACAACAGAAGCTGCCAAGACTGAGAATTCCAGTGTTTTGTCAGATAGTAAGCCAGAAAGCACATCAGTGGGATCTCCTCAAAGCACTGTGTTTCCTAGTGGATATGAGGCTCTGATGCTAGAAGTCTGTGACGAGACAGAGATTGCTGAACTGAAACTTAAGATTGGAGACTTTGAAATGCATTTGAAGCGGAACATTGGAGCCACCCATGCTCCAGTGTCTACCATCTCGCCAACAGTAGCACCACCTATTCCATCTCCACCCATGGTTGAATCAGCTCCTGCTCCCCCTCCAGCATCTGCACCAAAACCTTCTCCTGCCAAAACTACTCCATTTAATAACGGCGCTGTATCCAAGTCACCAAAATTAGCAGCATTGGAGGCTTCTGGATCTAATGGATATGTTCTGGTTACTTCTCCAACGGTTGGTTCGTTTCGAAGGGGCAGAACAGTGAAAGGAAAGAAGCAACCTCCTATCTTTCAAGAGGGTGATCTTATCAAAGAAGGACAGGTAATTGGATACGTGGATCAGTTTGGCACTGAACTTCCTGTGAAGACTGATGTGGGTGGAGAAGTTTTGAAGCTCCTATTCAATGACGGAGATGCCGTTGGTTTTGGAGACGCGCTTATTGCCGTCTTGCCATCATTCCCCGGAATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

262

Amino Acids

27.7

Weight (kDa)

8.41

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	749
AciI	CCGC	2 cut(s)	97, 316
AclWI	GGATC	3 cut(s)	205, 523, 660
AcsI	RAATTY	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	6 cut(s)	302, 313, 398, 608, 706, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	538, 570
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	137, 404, 709
AluI	AGCT	3 cut(s)	137, 404, 709
Alw26I	GTCTC	3 cut(s)	254, 288, 738
AlwI	GGATC	3 cut(s)	205, 523, 660
AlwNI	CAGNNNCTG	3 cut(s)	137, 407, 425
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	137, 497
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	473, 751
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	477, 626
AsuII	TTCGAA	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	131, 686
BbvI	GCAGC	2 cut(s)	124, 509
BccI	CCATC	4 cut(s)	55, 359, 388, 775
BceAI	ACGGC	3 cut(s)	484, 716, 743
BciVI	GTATCC	2 cut(s)	487, 638
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	3 cut(s)	254, 288, 738
BfaI	CTAG	3 cut(s)	36, 222, 245
BfoI	RGCGCY	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	284
BfuI	GTATCC	2 cut(s)	487, 638
BisI	GCNGC	2 cut(s)	138, 498
BlsI	GCNGC	2 cut(s)	139, 499
Bme1390I	CCNGG	1 cut(s)	777
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	3 cut(s)	231, 431, 718
BpiI	GAAGAC	2 cut(s)	131, 686
BpmI	CTGGAG	2 cut(s)	324, 402
Bpu14I	TTCGAA	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	777
BsaAI	YACGTR	1 cut(s)	649
BsaJI	CCNNGG	3 cut(s)	52, 390, 775
BsaXI	ACNNNNNCTCC	4 cut(s)	322, 352, 717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	4 cut(s)	8, 156, 341, 784
BseDI	CCNNGG	3 cut(s)	52, 390, 775
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	4 cut(s)	8, 156, 341, 784
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	124, 509
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	749
BshFI	GGCC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	3 cut(s)	254, 288, 738
BsmBI	CGTCTC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	41, 197, 515, 616, 652
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	97, 316
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	749
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	3 cut(s)	205, 523, 660
BspT104I	TTCGAA	1 cut(s)	562
BspTI	CTTAAG	1 cut(s)	284
BsrI	ACTGG	4 cut(s)	8, 156, 341, 784
BssECI	CCNNGG	3 cut(s)	52, 390, 775
BssMI	GATC	5 cut(s)	41, 197, 515, 616, 652
BssT1I	CCWWGG	2 cut(s)	52, 390
Bst4CI	ACNGT	4 cut(s)	214, 364, 550, 577
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	649
BstBI	TTCGAA	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	749
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	2 cut(s)	473, 751
BstKTI	GATC	5 cut(s)	44, 200, 518, 619, 655
BstMAI	GTCTC	3 cut(s)	254, 288, 738
BstMBI	GATC	5 cut(s)	41, 197, 515, 616, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	313, 335, 506, 755
BstSCI	CCNGG	1 cut(s)	775
BstUI	CGCG	1 cut(s)	749
BstV1I	GCAGC	2 cut(s)	124, 509
BstV2I	GAAGAC	2 cut(s)	131, 686
BstX2I	RGATCY	2 cut(s)	197, 515
BstYI	RGATCY	2 cut(s)	197, 515
BsuI	GTATCC	2 cut(s)	487, 638
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	390
BtsIMutI	CAGTG	7 cut(s)	15, 163, 198, 210, 348, 582, 663
CaiI	CAGNNNCTG	3 cut(s)	137, 407, 425
CfoI	GCGC	2 cut(s)	473, 751
CseI	GACGC	1 cut(s)	755
CviAII	CATG	3 cut(s)	117, 335, 391
CviJI	RGCY	8 cut(s)	28, 137, 178, 236, 329, 404, 509, 709
CviKI_1	RGCY	8 cut(s)	28, 137, 178, 236, 329, 404, 509, 709
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	5 cut(s)	43, 199, 517, 618, 654
DpnII	GATC	5 cut(s)	41, 197, 515, 616, 652
Eco130I	CCWWGG	2 cut(s)	52, 390
Eco147I	AGGCCT	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	52, 390
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	52, 390
Esp3I	CGTCTC	1 cut(s)	738
FaeI	CATG	3 cut(s)	120, 338, 394
FaiI	YATR	7 cut(s)	15, 46, 118, 231, 336, 392, 528
FatI	CATG	3 cut(s)	116, 334, 390
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	138, 498
Fsp4HI	GCNGC	2 cut(s)	138, 498
FspBI	CTAG	3 cut(s)	36, 222, 245
GlaI	GCGC	2 cut(s)	472, 750
GluI	GCNGC	2 cut(s)	138, 498
GsuI	CTGGAG	2 cut(s)	324, 402
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	2 cut(s)	473, 751
Hin1II	CATG	3 cut(s)	120, 338, 394
Hin6I	GCGC	2 cut(s)	471, 749
HinP1I	GCGC	2 cut(s)	471, 749
HinfI	GANTC	3 cut(s)	105, 398, 780
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	477, 626
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	169, 240
Hpy188III	TCNNGA	2 cut(s)	513, 608
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	5 cut(s)	18, 94, 447, 558, 623
HpyCH4III	ACNGT	4 cut(s)	214, 364, 550, 577
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	2 cut(s)	307, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	313, 335, 506, 755
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	3 cut(s)	120, 338, 394
HspAI	GCGC	2 cut(s)	471, 749
Kzo9I	GATC	5 cut(s)	41, 197, 515, 616, 652
LmnI	GCTCC	5 cut(s)	326, 343, 409, 415, 714
Lsp1109I	GCAGC	2 cut(s)	124, 509
LweI	GCATC	3 cut(s)	231, 431, 718
MaeI	CTAG	3 cut(s)	36, 222, 245
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	3 cut(s)	254, 483, 535
MalI	GATC	5 cut(s)	43, 199, 517, 618, 654
MboI	GATC	5 cut(s)	41, 197, 515, 616, 652
MboII	GAAGA	2 cut(s)	136, 691
MflI	RGATCY	2 cut(s)	197, 515
MluCI	AATT	3 cut(s)	151, 491, 639
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	7 cut(s)	43, 213, 226, 426, 499, 604, 606
Mph1103I	ATGCAT	1 cut(s)	309
MseI	TTAA	2 cut(s)	285, 462
MslI	CAYNNNNRTG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	749
MwoI	GCNNNNNNNGC	4 cut(s)	313, 335, 506, 755
NciI	CCSGG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	41, 197, 515, 616, 652
NlaIII	CATG	3 cut(s)	120, 338, 394
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	254, 483
NsiI	ATGCAT	1 cut(s)	309
NspV	TTCGAA	1 cut(s)	562
OliI	CACNNNNGTG	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	554, 729
PfeI	GAWTC	2 cut(s)	398, 780
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	139, 499
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	649
PspN4I	GGNNCC	1 cut(s)	328
PstNI	CAGNNNCTG	3 cut(s)	137, 407, 425
PsuI	RGATCY	2 cut(s)	197, 515
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	285, 462
SatI	GCNGC	2 cut(s)	138, 498
Sau3AI	GATC	5 cut(s)	41, 197, 515, 616, 652
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	777
SetI	ASST	9 cut(s)	35, 139, 376, 406, 439, 598, 639, 651, 711
SfaNI	GCATC	3 cut(s)	231, 431, 718
SfuI	TTCGAA	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	151, 491, 639
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	97, 316
SspMI	CTAG	3 cut(s)	36, 222, 245
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	52, 390
TaaI	ACNGT	4 cut(s)	214, 364, 550, 577
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	1 cut(s)	562
TasI	AATT	3 cut(s)	151, 491, 639
TfiI	GAWTC	2 cut(s)	398, 780
Tru1I	TTAA	2 cut(s)	285, 462
Tru9I	TTAA	2 cut(s)	285, 462
TscAI	CASTG	7 cut(s)	15, 163, 198, 217, 348, 582, 670
TseFI	GTSAC	2 cut(s)	254, 483
TseI	GCWGC	2 cut(s)	137, 497
Tsp45I	GTSAC	2 cut(s)	254, 483
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	7 cut(s)	15, 163, 198, 217, 348, 582, 670
Van91I	CCANNNNNTGG	1 cut(s)	551
Vha464I	CTTAAG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	3 cut(s)	36, 222, 245
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.