MD07G1228300.v1.1

Biotin carboxyl carrier protein of acetyl-CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006727
Physical Location & Seq
Forward (+)
30358599 .. 30363082
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1228300.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGAGTCCTCCGCCGCTCTCCGATCCTTCAACTGTTCTGTAGGCACGGTTTCCCATGTCCGGTCCTTGCTTGACAAACCTGGTATGTTGCCTGTGTACAATACCAGAAGGCCCACTCCAAGTAGATCATATTTCCAAGGCTTGATGGTTAGTGAGAAGTTCATTTATTCTTCACAAAAGCGAAGGGGAGTGCTAGTATCATGTGTGAAGACATCTGAAGCTGCTAAGACTGAAAATTCCAGCGTTTCAGCAGATAGTAAACCACAACGCTCATCAGAGAAAGCTACCCATCCCACAATTTTTCCTAGTGGATTCGAGGCACTGATGCTAGAAGTCTGTGACGAGACAGAGGTTGCTGAACTGAAACTTAAGGTTGGAGACTTTGAAATGCATTTGAAGCGGAATATTGCAGTCACCAGTGATCCAGTGCCTATCATCTCGCCAGCAACACCACCACCTGTTCCATCTAAACCTATGGATTCAACTCCTGCTCCCCCTCCAGCATCACCACCAAAATCTTCTGAAAAAACCACTCCATTTACAAACGTATCTGTAGACAAGTCATCAAGGTTAGCAGCCTTGGAGGCTTCTGGTGCTAAGGGATATGATCTGGTTTCTTCTCCTACGGTTGGTTCATTCCGCAGGGGAAGAACAGTGAAAGGAAAGAAGCAACCTCCCATCTTTAAAGAGGGTGATTTGATAAAAAAAGGACAGGTAATCGGATATGTGGATCAGTTTGGCACCGAACTTCCTGTGAAGACTGATGTGGGTGGAGAAGTTTTGAAGCTCCTCTTCAACGACGGAGAAGCAGTTGGTTTCGGAGACCCCCTTATCGCTGTCTTGCCCTCATTTGCCGGTATCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Biotin_lipoyl

Protein Analysis

289

Amino Acids

30.83

Weight (kDa)

9.12

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 740
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 555
AciI CCGC 4 cut(s) 12, 15, 400, 640
AclWI GGATC 3 cut(s) 18, 416, 738
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 60, 629
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 6 cut(s) 31, 386, 397, 483, 784, 796
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 221, 284, 787
AluI AGCT 3 cut(s) 221, 284, 787
Alw26I GTCTC 3 cut(s) 338, 372, 816
AlwI GGATC 3 cut(s) 18, 416, 738
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 221, 575
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 63, 111
AsuHPI GGTGA 3 cut(s) 406, 498, 704
AvaII GGWCC 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 215, 764
BbvI GCAGC 2 cut(s) 208, 587
BccI CCATC 4 cut(s) 139, 297, 472, 686
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 338, 372, 816
BfaI CTAG 3 cut(s) 194, 306, 329
BfmI CTRYAG 2 cut(s) 39, 552
BfrI CTTAAG 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 3 cut(s) 15, 222, 576
BlsI GCNGC 3 cut(s) 16, 223, 577
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 63, 111
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 315, 512
BpiI GAAGAC 2 cut(s) 215, 764
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 136, 579
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 6 cut(s) 180, 210, 475, 505, 795, 825
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 629
Bse118I RCCGGY 1 cut(s) 854
Bse1I ACTGG 3 cut(s) 417, 425, 862
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 136, 579
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 60, 629
BseNI ACTGG 3 cut(s) 417, 425, 862
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 2 cut(s) 208, 587
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 740
BsiSI CCGG 2 cut(s) 61, 855
BslI CCNNNNNNNGG 2 cut(s) 60, 629
BsmAI GTCTC 3 cut(s) 338, 372, 816
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 23, 125, 421, 607, 730
BspACI CCGC 4 cut(s) 12, 15, 400, 640
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 3 cut(s) 18, 416, 738
BspT107I GGYRCC 1 cut(s) 740
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 816
BsrBI CCGCTC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 854
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 3 cut(s) 417, 425, 862
BssAI RCCGGY 1 cut(s) 854
BssECI CCNNGG 2 cut(s) 136, 579
BssMI GATC 5 cut(s) 23, 125, 421, 607, 730
BssT1I CCWWGG 2 cut(s) 136, 579
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 4 cut(s) 35, 49, 628, 655
Bst6I CTCTTC 1 cut(s) 797
BstAFI CTTAAG 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 225, 597
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 5 cut(s) 26, 128, 424, 610, 733
BstMAI GTCTC 3 cut(s) 338, 372, 816
BstMBI GATC 5 cut(s) 23, 125, 421, 607, 730
BstMWI GCNNNNNNNGC 3 cut(s) 397, 584, 593
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 39, 552
BstV1I GCAGC 2 cut(s) 208, 587
BstV2I GAAGAC 2 cut(s) 215, 764
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 4 cut(s) 320, 424, 432, 660
Cac8I GCNNGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 854
Cfr13I GGNCC 2 cut(s) 63, 111
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 56, 201
CviJI RGCY 7 cut(s) 112, 141, 221, 284, 578, 587, 787
CviKI_1 RGCY 7 cut(s) 112, 141, 221, 284, 578, 587, 787
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 225, 597
DpnI GATC 5 cut(s) 25, 127, 423, 609, 732
DpnII GATC 5 cut(s) 23, 125, 421, 607, 730
DraI TTTAAA 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 136, 579
Eco31I GGTCTC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 136, 579
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 2 cut(s) 136, 579
FaeI CATG 2 cut(s) 59, 204
FaiI YATR 7 cut(s) 57, 86, 130, 202, 476, 606, 726
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FatI CATG 2 cut(s) 55, 200
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 15, 222, 576
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 15, 222, 576
FspBI CTAG 3 cut(s) 194, 306, 329
GluI GCNGC 3 cut(s) 15, 222, 576
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 61, 855
Hin1II CATG 2 cut(s) 59, 204
HinfI GANTC 3 cut(s) 5, 312, 479
HpaII CCGG 2 cut(s) 61, 855
HphI GGTGA 3 cut(s) 406, 498, 704
Hpy166II GTNNAC 3 cut(s) 97, 260, 556
Hpy188I TCNGA 6 cut(s) 23, 217, 277, 523, 722, 821
Hpy8I GTNNAC 3 cut(s) 97, 260, 556
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 3 cut(s) 37, 102, 177
HpyCH4III ACNGT 4 cut(s) 35, 49, 628, 655
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 391, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 584, 593
HpyF3I CTNAG 2 cut(s) 225, 597
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 2 cut(s) 59, 204
Kzo9I GATC 5 cut(s) 23, 125, 421, 607, 730
LmnI GCTCC 2 cut(s) 496, 792
Lsp1109I GCAGC 2 cut(s) 208, 587
LweI GCATC 2 cut(s) 315, 512
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 3 cut(s) 194, 306, 329
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 338, 412
MalI GATC 5 cut(s) 25, 127, 423, 609, 732
MbiI CCGCTC 1 cut(s) 17
MboI GATC 5 cut(s) 23, 125, 421, 607, 730
MboII GAAGA 7 cut(s) 162, 220, 510, 609, 660, 769, 784
MluCI AATT 2 cut(s) 235, 297
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 9 cut(s) 19, 310, 343, 507, 577, 682, 684, 800, 856
Mph1103I ATGCAT 1 cut(s) 393
MseI TTAA 2 cut(s) 369, 684
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 61, 855
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 397, 584, 593
NdeII GATC 5 cut(s) 23, 125, 421, 607, 730
NlaIII CATG 2 cut(s) 59, 204
NlaIV GGNNCC 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 338, 412
NsiI ATGCAT 1 cut(s) 393
PfeI GAWTC 2 cut(s) 312, 479
PkrI GCNGC 3 cut(s) 16, 223, 577
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 2 cut(s) 63, 111
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 369, 684
SatI GCNGC 3 cut(s) 15, 222, 576
Sau3AI GATC 5 cut(s) 23, 125, 421, 607, 730
Sau96I GGNCC 2 cut(s) 63, 111
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 81
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 2 cut(s) 315, 512
SfcI CTRYAG 2 cut(s) 39, 552
SinI GGWCC 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 235, 297
SsiI CCGC 4 cut(s) 12, 15, 400, 640
SspI AATATT 1 cut(s) 406
SspMI CTAG 3 cut(s) 194, 306, 329
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 136, 579
TaaI ACNGT 4 cut(s) 35, 49, 628, 655
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 235, 297
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 312, 479
Tru1I TTAA 2 cut(s) 369, 684
Tru9I TTAA 2 cut(s) 369, 684
TscAI CASTG 4 cut(s) 327, 424, 432, 660
TseFI GTSAC 2 cut(s) 338, 412
TseI GCWGC 2 cut(s) 221, 575
Tsp45I GTSAC 2 cut(s) 338, 412
TspDTI ATGAA 2 cut(s) 151, 624
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 4 cut(s) 327, 424, 432, 660
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 3 cut(s) 194, 306, 329
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.