Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

61055285 .. 61059464

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGTCCTCTGCCGTTCTCCGATCCCTCAACTGTTCTGTTGGCACAGTTTCACAGATCCACTCATTTGTTGACAAGCCTGGTATGCTTCCGGTGTATAATGCCAGAAGGCCTACCTCTAGTAGATCATATTTCCAAGGATTGATGGTTAGTGAGAAGTTCATTTATTCTCCACAAAAGCGGGAGGGAGTCCTAATATCATGTGTGAAGACAACAGAAGCTGCCAAGACTGAGAATTCCAGTGTTTTGTCAGATAGTAAGCCAGAATGCACATCAGAGGGATCTCCTCAAAGCACTGTGTTTCCTAGTGGATATGAGGCTCTGATGCTAGAAGTCTGTGACGAGACAGAGATTGCTGAACTGAAACTTAAGATTGGAGACTTTGAAATGCATTTGAAGCGGAACATTGGAGCCACCAATGCTCCAGTGTCTACCATCTCGCCAACAGTAGCACCACCTATTCCATCTCCACCCATGGTTGAATCAGCTCTTGCTCCCCCTCCAGTATCTGCACCAAAACCTTCTCCTGCCAAAACTACTCCATTTAATAACGGCGCTGTATCCAAGTCACCAAAATTAGCAGCATTGGAGGCTTCTGGATCTAATGGATATGTTCTGGTTACTTCTCCAACGGTTGGTTCGTTTCGAAGGGGCAGAACAGTGAAAGGAAAGAAGCAACCTCCTATCTTTCAAGAGGGTGATCTTATCAAAGAAGGACAGGTAATTGGATATGGATCAACTGATGTGGGTGGAGAAGTTTTGAAGCTCCTATTCAATGACGGAGATGCCGTTGGTTTTGGAGACGCACTTATTGCCGTCTTGCCATCATTCCCCGGAATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

281

Amino Acids

29.63

Weight (kDa)

6.75

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	431
AciI	CCGC	2 cut(s)	181, 400
AclWI	GGATC	5 cut(s)	18, 52, 289, 607, 742
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	386, 397, 482, 692, 763, 775
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AluBI	AGCT	3 cut(s)	221, 488, 766
AluI	AGCT	3 cut(s)	221, 488, 766
Alw26I	GTCTC	3 cut(s)	338, 372, 795
AlwI	GGATC	5 cut(s)	18, 52, 289, 607, 742
AlwNI	CAGNNNCTG	2 cut(s)	221, 509
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	221, 581
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	834
AsuHPI	GGTGA	2 cut(s)	561, 710
AsuII	TTCGAA	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	208, 593
BccI	CCATC	4 cut(s)	139, 443, 472, 832
BceAI	ACGGC	3 cut(s)	568, 773, 800
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	3 cut(s)	338, 372, 795
BfaI	CTAG	3 cut(s)	120, 306, 329
BfoI	RGCGCY	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	2 cut(s)	222, 582
BlsI	GCNGC	2 cut(s)	223, 583
Bme1390I	CCNGG	2 cut(s)	81, 834
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	81, 834
BmsI	GCATC	2 cut(s)	315, 775
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	2 cut(s)	408, 486
Bpu14I	TTCGAA	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	733
BsaJI	CCNNGG	3 cut(s)	136, 474, 832
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	406, 436, 774, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	4 cut(s)	240, 425, 503, 841
Bse8I	GATNNNNATC	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	136, 474, 832
BseJI	GATNNNNATC	1 cut(s)	733
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	4 cut(s)	240, 425, 503, 841
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	208, 593
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	92, 834
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	338, 372, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	646
Bsp143I	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	181, 400
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	5 cut(s)	18, 52, 289, 607, 742
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	4 cut(s)	240, 425, 503, 841
BssECI	CCNNGG	3 cut(s)	136, 474, 832
BssMI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
BssT1I	CCWWGG	2 cut(s)	136, 474
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	7 cut(s)	26, 60, 128, 284, 602, 703, 737
BstMAI	GTCTC	3 cut(s)	338, 372, 795
BstMBI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 812
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	79, 832
BstV1I	GCAGC	2 cut(s)	208, 593
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	3 cut(s)	57, 281, 599
BstYI	RGATCY	3 cut(s)	57, 281, 599
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	474
BtsIMutI	CAGTG	4 cut(s)	247, 294, 432, 666
CaiI	CAGNNNCTG	2 cut(s)	221, 509
CfoI	GCGC	1 cut(s)	557
CseI	GACGC	1 cut(s)	812
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	2 cut(s)	201, 475
CviJI	RGCY	9 cut(s)	79, 112, 221, 262, 320, 413, 488, 593, 766
CviKI_1	RGCY	9 cut(s)	79, 112, 221, 262, 320, 413, 488, 593, 766
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	7 cut(s)	25, 59, 127, 283, 601, 702, 736
DpnII	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
Eco130I	CCWWGG	2 cut(s)	136, 474
Eco147I	AGGCCT	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	136, 474
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	2 cut(s)	136, 474
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	2 cut(s)	204, 478
FaiI	YATR	8 cut(s)	86, 99, 130, 202, 315, 476, 612, 732
FatI	CATG	2 cut(s)	200, 474
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	222, 582
Fsp4HI	GCNGC	2 cut(s)	222, 582
FspBI	CTAG	3 cut(s)	120, 306, 329
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	2 cut(s)	222, 582
GsuI	CTGGAG	2 cut(s)	408, 486
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	92, 834
HgaI	GACGC	1 cut(s)	812
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	2 cut(s)	204, 478
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	5, 189, 482, 837
HpaII	CCGG	2 cut(s)	92, 834
HphI	GGTGA	2 cut(s)	561, 710
Hpy166II	GTNNAC	2 cut(s)	73, 432
Hpy188I	TCNGA	4 cut(s)	23, 253, 277, 324
Hpy188III	TCNNGA	2 cut(s)	597, 692
Hpy8I	GTNNAC	2 cut(s)	73, 432
HpyAV	CCTTC	4 cut(s)	102, 531, 642, 707
HpyCH4III	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
HpyCH4V	TGCA	3 cut(s)	270, 391, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 812
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	204, 478
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
LmnI	GCTCC	4 cut(s)	410, 427, 499, 771
Lsp1109I	GCAGC	2 cut(s)	208, 593
LweI	GCATC	2 cut(s)	315, 775
MaeI	CTAG	3 cut(s)	120, 306, 329
MaeIII	GTNAC	3 cut(s)	338, 567, 619
MalI	GATC	7 cut(s)	25, 59, 127, 283, 601, 702, 736
MboI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	3 cut(s)	57, 281, 599
MluCI	AATT	3 cut(s)	235, 575, 723
MlyI	GAGTC	2 cut(s)	14, 198
MmeI	TCCRAC	1 cut(s)	653
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	2 cut(s)	369, 546
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	92, 834
MspR9I	CCNGG	2 cut(s)	81, 834
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 812
NciI	CCSGG	1 cut(s)	834
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
NlaIII	CATG	2 cut(s)	204, 478
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	338, 567
NsiI	ATGCAT	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	638, 786
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	482, 837
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	223, 583
PleI	GAGTC	2 cut(s)	13, 197
PpsI	GAGTC	2 cut(s)	13, 197
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	412
PstNI	CAGNNNCTG	2 cut(s)	221, 509
PsuI	RGATCY	3 cut(s)	57, 281, 599
SaqAI	TTAA	2 cut(s)	369, 546
SatI	GCNGC	2 cut(s)	222, 582
Sau3AI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 734
SchI	GAGTC	2 cut(s)	14, 198
ScrFI	CCNGG	2 cut(s)	81, 834
SetI	ASST	8 cut(s)	119, 223, 460, 490, 523, 682, 723, 768
SfaNI	GCATC	2 cut(s)	315, 775
SfuI	TTCGAA	1 cut(s)	646
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	235, 575, 723
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	181, 400
SspMI	CTAG	3 cut(s)	120, 306, 329
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	79, 832
StyI	CCWWGG	2 cut(s)	136, 474
TaaI	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
TaqI	TCGA	1 cut(s)	646
TasI	AATT	3 cut(s)	235, 575, 723
TfiI	GAWTC	2 cut(s)	482, 837
Tru1I	TTAA	2 cut(s)	369, 546
Tru9I	TTAA	2 cut(s)	369, 546
TscAI	CASTG	4 cut(s)	247, 301, 432, 666
TseFI	GTSAC	2 cut(s)	338, 567
TseI	GCWGC	2 cut(s)	221, 581
Tsp45I	GTSAC	2 cut(s)	338, 567
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	4 cut(s)	247, 301, 432, 666
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	3 cut(s)	120, 306, 329
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.