Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

47167890 .. 47172291

Gene Structure 4402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGTCCTCTGCTGTTCTCCGATCCTTCAACTGTTCTGTTGGCACAGTTTCACAGATCCACTCATTTGTTGACAAGCCTGGTATGCTTCCAGTGTATAATGCCAGAAGGCCTACCTCTAGTAGATCATATTTCCAAGGATTGATGGTTAGTGAGAAGTTCATTTATTCTCCACAAAAGCGGAAGGGAGTCCTAATATCATGTGTGAAGACAACAGAAGCTGCCAAGACTGAGAATTCCAGTGTTTTGTCAGATAGTAAGCCAGAAAGCACATCAGTGGGATCTCCTCAAAGCACTGTGTTTCCTAGTGGATATGAGGCTCTGATGCTAGAAGTCTGTGACGAGACAGAGATTGCTGAACTGAAACTTAAGATTGGAGACTTTGAAATGCATTTGAAGCGGAACATTGGAGCCACCCATGCTCCAGTGTCTACCATCTCGCCAACAGTAGCACCACCTATTCCATCTCCACCCATGGTTGAATCAGCTCCTGCTCCCCCTCCAGCATCTGCACCAAAACCTTCTCCTGCCAAAACTACTCCATTTAATAACGGCGCTGTATCCAAGTCACCAAAATTAGCAGCATTGGAGGCTTCTGGATCTAATGGATATGTTCTGGTTACTTCTCCAACGGTTGGTTCGTTTCGAAGGGGCAGAACAGTGAAAGGAAAGAAGCAACCTCCTATCTTTCAAGAGGGTGATCTTATCAAAGAAGGACAGGTAATTGGATACGTGGATCAGTTTGGCACTGAACTTCCTGTGAAGACTGATGTGGGTGGAGAAGTTTTGAAGCTCCTATTCAATGACGGAGATGCCGTTGGTTTTGGAGACGCGCTTATTGCCGTCTTGCCATCATTCCCCGGAATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

290

Amino Acids

30.67

Weight (kDa)

8.32

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	833
AciI	CCGC	2 cut(s)	181, 400
AclWI	GGATC	5 cut(s)	18, 52, 289, 607, 744
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	7 cut(s)	31, 386, 397, 482, 692, 790, 802
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	221, 488, 793
AluI	AGCT	3 cut(s)	221, 488, 793
Alw26I	GTCTC	3 cut(s)	338, 372, 822
AlwI	GGATC	5 cut(s)	18, 52, 289, 607, 744
AlwNI	CAGNNNCTG	3 cut(s)	221, 491, 509
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	221, 581
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	557, 835
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	2 cut(s)	561, 710
AsuII	TTCGAA	1 cut(s)	646
BbsI	GAAGAC	2 cut(s)	215, 770
BbvI	GCAGC	2 cut(s)	208, 593
BccI	CCATC	4 cut(s)	139, 443, 472, 859
BceAI	ACGGC	3 cut(s)	568, 800, 827
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	2 cut(s)	571, 722
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	338, 372, 822
BfaI	CTAG	3 cut(s)	120, 306, 329
BfoI	RGCGCY	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	2 cut(s)	571, 722
BisI	GCNGC	2 cut(s)	222, 582
BlsI	GCNGC	2 cut(s)	223, 583
Bme1390I	CCNGG	2 cut(s)	81, 861
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	81, 861
BmsI	GCATC	3 cut(s)	315, 515, 802
BpiI	GAAGAC	2 cut(s)	215, 770
BpmI	CTGGAG	2 cut(s)	408, 486
Bpu14I	TTCGAA	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	861
BsaAI	YACGTR	1 cut(s)	733
BsaJI	CCNNGG	3 cut(s)	136, 474, 859
BsaXI	ACNNNNNCTCC	4 cut(s)	406, 436, 801, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	4 cut(s)	92, 240, 425, 868
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	136, 474, 859
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	4 cut(s)	92, 240, 425, 868
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	208, 593
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	861
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	338, 372, 822
BsmBI	CGTCTC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	646
Bsp143I	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	181, 400
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	5 cut(s)	18, 52, 289, 607, 744
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	4 cut(s)	92, 240, 425, 868
BssECI	CCNNGG	3 cut(s)	136, 474, 859
BssMI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
BssT1I	CCWWGG	2 cut(s)	136, 474
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
BstAFI	CTTAAG	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	733
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	2 cut(s)	557, 835
BstKTI	GATC	7 cut(s)	26, 60, 128, 284, 602, 703, 739
BstMAI	GTCTC	3 cut(s)	338, 372, 822
BstMBI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 839
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	79, 859
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	2 cut(s)	208, 593
BstV2I	GAAGAC	2 cut(s)	215, 770
BstX2I	RGATCY	3 cut(s)	57, 281, 599
BstYI	RGATCY	3 cut(s)	57, 281, 599
BsuI	GTATCC	2 cut(s)	571, 722
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	474
BtsIMutI	CAGTG	7 cut(s)	99, 247, 282, 294, 432, 666, 747
CaiI	CAGNNNCTG	3 cut(s)	221, 491, 509
CfoI	GCGC	2 cut(s)	557, 835
CseI	GACGC	1 cut(s)	839
CviAII	CATG	3 cut(s)	201, 419, 475
CviJI	RGCY	9 cut(s)	79, 112, 221, 262, 320, 413, 488, 593, 793
CviKI_1	RGCY	9 cut(s)	79, 112, 221, 262, 320, 413, 488, 593, 793
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	7 cut(s)	25, 59, 127, 283, 601, 702, 738
DpnII	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
Eco130I	CCWWGG	2 cut(s)	136, 474
Eco147I	AGGCCT	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	136, 474
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	2 cut(s)	136, 474
Esp3I	CGTCTC	1 cut(s)	822
FaeI	CATG	3 cut(s)	204, 422, 478
FaiI	YATR	8 cut(s)	86, 99, 130, 202, 315, 420, 476, 612
FatI	CATG	3 cut(s)	200, 418, 474
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	222, 582
Fsp4HI	GCNGC	2 cut(s)	222, 582
FspBI	CTAG	3 cut(s)	120, 306, 329
GlaI	GCGC	2 cut(s)	556, 834
GluI	GCNGC	2 cut(s)	222, 582
GsuI	CTGGAG	2 cut(s)	408, 486
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	861
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	2 cut(s)	557, 835
Hin1II	CATG	3 cut(s)	204, 422, 478
Hin6I	GCGC	2 cut(s)	555, 833
HinP1I	GCGC	2 cut(s)	555, 833
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	5, 189, 482, 864
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	2 cut(s)	561, 710
Hpy166II	GTNNAC	2 cut(s)	73, 432
Hpy188I	TCNGA	3 cut(s)	23, 253, 324
Hpy188III	TCNNGA	2 cut(s)	597, 692
Hpy8I	GTNNAC	2 cut(s)	73, 432
HpyAV	CCTTC	6 cut(s)	37, 102, 178, 531, 642, 707
HpyCH4III	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	2 cut(s)	391, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 839
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	3 cut(s)	204, 422, 478
HspAI	GCGC	2 cut(s)	555, 833
Kzo9I	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
LmnI	GCTCC	5 cut(s)	410, 427, 493, 499, 798
Lsp1109I	GCAGC	2 cut(s)	208, 593
LweI	GCATC	3 cut(s)	315, 515, 802
MaeI	CTAG	3 cut(s)	120, 306, 329
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	3 cut(s)	338, 567, 619
MalI	GATC	7 cut(s)	25, 59, 127, 283, 601, 702, 738
MboI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
MboII	GAAGA	2 cut(s)	220, 775
MflI	RGATCY	3 cut(s)	57, 281, 599
MluCI	AATT	3 cut(s)	235, 575, 723
MlyI	GAGTC	2 cut(s)	14, 198
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	8 cut(s)	19, 127, 297, 310, 510, 583, 688, 690
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	2 cut(s)	369, 546
MslI	CAYNNNNRTG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	2 cut(s)	81, 861
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	5 cut(s)	85, 397, 419, 590, 839
NciI	CCSGG	1 cut(s)	861
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
NlaIII	CATG	3 cut(s)	204, 422, 478
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	338, 567
NsiI	ATGCAT	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	638, 813
PfeI	GAWTC	2 cut(s)	482, 864
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	223, 583
PleI	GAGTC	2 cut(s)	13, 197
PpsI	GAGTC	2 cut(s)	13, 197
Ppu21I	YACGTR	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	412
PstNI	CAGNNNCTG	3 cut(s)	221, 491, 509
PsuI	RGATCY	3 cut(s)	57, 281, 599
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	369, 546
SatI	GCNGC	2 cut(s)	222, 582
Sau3AI	GATC	7 cut(s)	23, 57, 125, 281, 599, 700, 736
SchI	GAGTC	2 cut(s)	14, 198
ScrFI	CCNGG	2 cut(s)	81, 861
SetI	ASST	9 cut(s)	119, 223, 460, 490, 523, 682, 723, 735, 795
SfaNI	GCATC	3 cut(s)	315, 515, 802
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	235, 575, 723
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	181, 400
SspMI	CTAG	3 cut(s)	120, 306, 329
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	79, 859
StyI	CCWWGG	2 cut(s)	136, 474
TaaI	ACNGT	6 cut(s)	35, 49, 298, 448, 634, 661
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	1 cut(s)	646
TasI	AATT	3 cut(s)	235, 575, 723
TfiI	GAWTC	2 cut(s)	482, 864
Tru1I	TTAA	2 cut(s)	369, 546
Tru9I	TTAA	2 cut(s)	369, 546
TscAI	CASTG	7 cut(s)	99, 247, 282, 301, 432, 666, 754
TseFI	GTSAC	2 cut(s)	338, 567
TseI	GCWGC	2 cut(s)	221, 581
Tsp45I	GTSAC	2 cut(s)	338, 567
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	7 cut(s)	99, 247, 282, 301, 432, 666, 754
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	3 cut(s)	120, 306, 329
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.