Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000159.1

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3726

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgagcccgatcaagagagggccacgtaggggtcgcacatcactcactccggcgcaagttagcgacaagcagtgttctgttggcacagtttcacagatccactcatttgttgacaagcctggtatgcttccggtgtataatgccagaaggcctacctctagtagatcatatttccaaggattgatggttagtgagaagttcatttattctccacaaaagcgggagggagtcctaatatcatgtgtgaagacaacagaagctgccaagactgagaattccagtgttttgtcagatagtaagccagaatgcacatcagagggatctcctcaaagcactgtgtttcctagtggatatgaggctctgatgctagaagtctgtgacgagacagagattgctgaactgaaacttaagattggagactttgaaatgcatttgaagcggaacattggagccaccaatgctccagtgtctaccatctcgccaacagtagcaccacctattccatctccacccatggttgaatcagctcttgctccccctccagtatctgcaccaaaaccttctcctgccaaaactactccatttaataacggcgctgtatccaagtcaccaaaattagcagcattggaggcttctggatctaatggatatgttctggttacttctccaacggttggttcgtttcgaaggggcagaacagtgaaaggaaagaagcaacctcctatctttcaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

245

Amino Acids

26.15

Weight (kDa)

9.53

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	2 cut(s)	220, 439
AclWI	GGATC	3 cut(s)	91, 328, 646
AcsI	RAATTY	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	29, 674
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	4 cut(s)	425, 436, 521, 731
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	2 cut(s)	260, 527
AluI	AGCT	2 cut(s)	260, 527
Alw26I	GTCTC	2 cut(s)	377, 411
AlwI	GGATC	3 cut(s)	91, 328, 646
AlwNI	CAGNNNCTG	2 cut(s)	260, 548
AoxI	GGCC	2 cut(s)	20, 149
ApeKI	GCWGC	2 cut(s)	260, 620
ApoI	RAATTY	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	55, 596
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	600
AsuII	TTCGAA	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	247, 632
BccI	CCATC	3 cut(s)	178, 482, 511
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	377, 411
BfaI	CTAG	3 cut(s)	159, 345, 368
BfoI	RGCGCY	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	610
BisI	GCNGC	2 cut(s)	261, 621
BlsI	GCNGC	2 cut(s)	262, 622
Bme1390I	CCNGG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	2 cut(s)	447, 525
Bpu14I	TTCGAA	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	175, 513
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 674
Bse1I	ACTGG	3 cut(s)	279, 464, 542
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	175, 513
BseLI	CCNNNNNNNGG	2 cut(s)	29, 674
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	3 cut(s)	279, 464, 542
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	247, 632
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	22, 151
BsiSI	CCGG	2 cut(s)	50, 131
BslI	CCNNNNNNNGG	2 cut(s)	29, 674
BsmAI	GTCTC	2 cut(s)	377, 411
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	22, 151
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	9, 96, 164, 320, 638
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	2 cut(s)	220, 439
BspANI	GGCC	2 cut(s)	22, 151
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	451
BspPI	GGATC	3 cut(s)	91, 328, 646
BspT104I	TTCGAA	1 cut(s)	685
BspTI	CTTAAG	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	279, 464, 542
BssECI	CCNNGG	2 cut(s)	175, 513
BssMI	GATC	5 cut(s)	9, 96, 164, 320, 638
BssT1I	CCWWGG	2 cut(s)	175, 513
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	5 cut(s)	88, 337, 487, 673, 700
BstAFI	CTTAAG	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	685
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	2 cut(s)	55, 596
BstKTI	GATC	5 cut(s)	12, 99, 167, 323, 641
BstMAI	GTCTC	2 cut(s)	377, 411
BstMBI	GATC	5 cut(s)	9, 96, 164, 320, 638
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 436, 458, 629
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	247, 632
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	3 cut(s)	96, 320, 638
BstYI	RGATCY	3 cut(s)	96, 320, 638
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	22, 151
BtgI	CCRYGG	1 cut(s)	513
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	5 cut(s)	77, 286, 333, 471, 705
CaiI	CAGNNNCTG	2 cut(s)	260, 548
CfoI	GCGC	2 cut(s)	55, 596
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	2 cut(s)	240, 514
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	5 cut(s)	11, 98, 166, 322, 640
DpnII	GATC	5 cut(s)	9, 96, 164, 320, 638
Eco130I	CCWWGG	2 cut(s)	175, 513
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	175, 513
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	175, 513
FaeI	CATG	2 cut(s)	243, 517
FaiI	YATR	7 cut(s)	125, 138, 169, 241, 354, 515, 651
FatI	CATG	2 cut(s)	239, 513
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	261, 621
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	261, 621
FspBI	CTAG	3 cut(s)	159, 345, 368
GlaI	GCGC	2 cut(s)	54, 595
GluI	GCNGC	2 cut(s)	261, 621
GsuI	CTGGAG	2 cut(s)	447, 525
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	22, 151
HapII	CCGG	2 cut(s)	50, 131
HhaI	GCGC	2 cut(s)	55, 596
Hin1II	CATG	2 cut(s)	243, 517
Hin6I	GCGC	2 cut(s)	53, 594
HinP1I	GCGC	2 cut(s)	53, 594
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	228, 521
HpaII	CCGG	2 cut(s)	50, 131
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	2 cut(s)	112, 471
Hpy188I	TCNGA	3 cut(s)	292, 316, 363
Hpy188III	TCNNGA	3 cut(s)	13, 636, 731
Hpy8I	GTNNAC	2 cut(s)	112, 471
HpyAV	CCTTC	3 cut(s)	141, 570, 681
HpyCH4III	ACNGT	5 cut(s)	88, 337, 487, 673, 700
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	309, 430, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 436, 458, 629
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	243, 517
HspAI	GCGC	2 cut(s)	53, 594
Kzo9I	GATC	5 cut(s)	9, 96, 164, 320, 638
LmnI	GCTCC	3 cut(s)	449, 466, 538
Lsp1109I	GCAGC	2 cut(s)	247, 632
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	159, 345, 368
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	3 cut(s)	377, 606, 658
MalI	GATC	5 cut(s)	11, 98, 166, 322, 640
MboI	GATC	5 cut(s)	9, 96, 164, 320, 638
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	3 cut(s)	96, 320, 638
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	274, 614
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	9 cut(s)	11, 166, 217, 310, 336, 349, 549, 622, 729
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	2 cut(s)	408, 585
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	2 cut(s)	50, 131
MspR9I	CCNGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	124, 436, 458, 629
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	5 cut(s)	9, 96, 164, 320, 638
NlaIII	CATG	2 cut(s)	243, 517
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	377, 606
NsiI	ATGCAT	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	677
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	262, 622
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	2 cut(s)	260, 548
PsuI	RGATCY	3 cut(s)	96, 320, 638
SaqAI	TTAA	2 cut(s)	408, 585
SatI	GCNGC	2 cut(s)	261, 621
Sau3AI	GATC	5 cut(s)	9, 96, 164, 320, 638
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	28, 158, 262, 499, 529, 562, 721
SfaNI	GCATC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	685
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	274, 614
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	220, 439
SspMI	CTAG	3 cut(s)	159, 345, 368
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	2 cut(s)	175, 513
TaaI	ACNGT	5 cut(s)	88, 337, 487, 673, 700
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	685
TasI	AATT	2 cut(s)	274, 614
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	408, 585
Tru9I	TTAA	2 cut(s)	408, 585
TscAI	CASTG	5 cut(s)	77, 286, 340, 471, 705
TseFI	GTSAC	2 cut(s)	377, 606
TseI	GCWGC	2 cut(s)	260, 620
Tsp45I	GTSAC	2 cut(s)	377, 606
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	5 cut(s)	77, 286, 340, 471, 705
Van91I	CCANNNNNTGG	1 cut(s)	674
Vha464I	CTTAAG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	3 cut(s)	159, 345, 368
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.