Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

26919285 .. 26923525

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGTCCTCGGCTGTTTTCCGATCCTTTAACTGTTCTGTAGGCACAGTTTCTCATGTTCGGTCCTCGCTTGACAAGCCTGGTATGCTTCCTGCGTATAATACCGCAAGGCCCACCGTGAGTAGATCATACTTCCAAGGCTTGATGGTTAGTGAGAAGTTCATTTATTCTCCACAAAAGCGGAGGGGAGTGCAAGTATCATGTGTGAAGACATCTGAAGCTGCCAAGAGTGAAAAATCCAGCGATAGTAAGCCACAAGTCTCATCAGAGAGAACTACTCAACCCGCAACTTTTCCTAATGGATTTGAGGCACTAATGCTAGAAGTCTGTGATGAGACAGAAGTTGCTGAACTGAAACTTAAGGTTGGAGACTTTGAAATGCATTTGAAGCGTAATATTGGAGCCACCAGTGCTCCTGTGTCTAGCATCTCGCCAGCAGCAGCACCACCTATTCCAAGTAAACCCATGGTTGAATCAGCTCCTGCTCCCCCTCCAGCACCAGCACCAGCACCAAAATCTTCTTCTGAAAAAGCCACTCCATTTACCAACACTTCTGTAGACAAGTCATCAAGATTAGCAGCCTTGGAGGCTTCTGGAGCTAACGGATATGTTCTGGTTTCTTCTCCTACGGTTGGTTCATTCCGAAGGGGTAGAACAGTGAAAGGAAAGAAGCAACCTCCAATCTGTAAAGAGGGTGATCTGATCAAAGGAGGACAAGTAATCGGATATGTGGATCAGTTTGGCACTGAACTTCCTGTGAAGTCAGATGTGGGCGGAGAAGTTTTGAAGCTCCTCTTCAATGACGGAGAAGCCGTTGGTTATGGAGACCCACTCATCGCTGTCTTGCCATCATTTCACGGTATCAATATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

292

Amino Acids

30.76

Weight (kDa)

8.94

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	4 cut(s)	105, 181, 285, 774
AclWI	GGATC	2 cut(s)	18, 741
AcuI	CTGAAG	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	377, 388, 473, 787, 799
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	4 cut(s)	221, 479, 599, 790
AluI	AGCT	4 cut(s)	221, 479, 599, 790
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	4 cut(s)	265, 329, 363, 819
AlwI	GGATC	2 cut(s)	18, 741
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	221, 437, 440, 578
AspS9I	GGNCC	2 cut(s)	63, 111
AsuHPI	GGTGA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	4 cut(s)	208, 449, 452, 590
BccI	CCATC	2 cut(s)	139, 856
BceAI	ACGGC	1 cut(s)	797
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	702
BcoDI	GTCTC	4 cut(s)	265, 329, 363, 819
BfaI	CTAG	2 cut(s)	320, 423
BfmI	CTRYAG	2 cut(s)	39, 555
BfrI	CTTAAG	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	587
BisI	GCNGC	4 cut(s)	222, 438, 441, 579
BlsI	GCNGC	4 cut(s)	223, 439, 442, 580
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	63, 111
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	4 cut(s)	262, 294, 816, 848
BpmI	CTGGAG	2 cut(s)	477, 615
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	4 cut(s)	9, 136, 465, 582
BsaXI	ACNNNNNCTCC	8 cut(s)	180, 210, 397, 427, 702, 732, 798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	4 cut(s)	9, 136, 465, 582
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	4 cut(s)	208, 449, 452, 590
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	4 cut(s)	265, 329, 363, 819
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	23, 125, 697, 702, 733
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	4 cut(s)	105, 181, 285, 774
BspANI	GGCC	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	18, 741
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	819
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	4 cut(s)	9, 136, 465, 582
BssMI	GATC	5 cut(s)	23, 125, 697, 702, 733
BssT1I	CCWWGG	3 cut(s)	136, 465, 582
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	6 cut(s)	35, 49, 118, 631, 658, 860
Bst6I	CTCTTC	1 cut(s)	800
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	465
BstKTI	GATC	5 cut(s)	26, 128, 700, 705, 736
BstMAI	GTCTC	4 cut(s)	265, 329, 363, 819
BstMBI	GATC	5 cut(s)	23, 125, 697, 702, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 85, 388, 410, 587, 596
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	39, 555
BstV1I	GCAGC	4 cut(s)	208, 449, 452, 590
BstV2I	GAAGAC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	820
BtsIMutI	CAGTG	3 cut(s)	415, 663, 744
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	63, 111
CviAII	CATG	3 cut(s)	56, 201, 466
DpnI	GATC	5 cut(s)	25, 127, 699, 704, 735
DpnII	GATC	5 cut(s)	23, 125, 697, 702, 733
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
EciI	GGCGGA	1 cut(s)	789
Eco130I	CCWWGG	3 cut(s)	136, 465, 582
Eco31I	GGTCTC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	3 cut(s)	136, 465, 582
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	3 cut(s)	136, 465, 582
FaeI	CATG	3 cut(s)	59, 204, 469
FaiI	YATR	9 cut(s)	57, 86, 99, 130, 202, 467, 609, 729, 822
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	3 cut(s)	55, 200, 465
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	702
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	222, 438, 441, 579
Fsp4HI	GCNGC	4 cut(s)	222, 438, 441, 579
FspBI	CTAG	2 cut(s)	320, 423
GluI	GCNGC	4 cut(s)	222, 438, 441, 579
GsuI	CTGGAG	2 cut(s)	477, 615
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	59, 204, 469
HinfI	GANTC	2 cut(s)	5, 473
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	2 cut(s)	461, 559
Hpy188I	TCNGA	8 cut(s)	23, 217, 268, 526, 644, 702, 725, 766
Hpy188III	TCNNGA	2 cut(s)	570, 594
Hpy8I	GTNNAC	2 cut(s)	461, 559
HpyAV	CCTTC	1 cut(s)	639
HpyCH4III	ACNGT	6 cut(s)	35, 49, 118, 631, 658, 860
HpyCH4V	TGCA	2 cut(s)	193, 382
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 85, 388, 410, 587, 596
Hsp92II	CATG	3 cut(s)	59, 204, 469
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	23, 125, 697, 702, 733
LmnI	GCTCC	6 cut(s)	401, 418, 484, 490, 596, 795
Lsp1109I	GCAGC	4 cut(s)	208, 449, 452, 590
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	320, 423
MalI	GATC	5 cut(s)	25, 127, 699, 704, 735
MboI	GATC	5 cut(s)	23, 125, 697, 702, 733
MboII	GAAGA	5 cut(s)	220, 510, 513, 612, 787
MfeI	CAATTG	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	871
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	2 cut(s)	30, 360
MspCI	CTTAAG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	6 cut(s)	76, 85, 388, 410, 587, 596
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	5 cut(s)	23, 125, 697, 702, 733
NlaIII	CATG	3 cut(s)	59, 204, 469
NlaIV	GGNNCC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	223, 439, 442, 580
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	63, 111
PstNI	CAGNNNCTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	30, 360
SatI	GCNGC	4 cut(s)	222, 438, 441, 579
Sau3AI	GATC	5 cut(s)	23, 125, 697, 702, 733
Sau96I	GGNCC	2 cut(s)	63, 111
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	7 cut(s)	223, 366, 451, 481, 601, 679, 792
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	2 cut(s)	39, 555
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	871
SsiI	CCGC	4 cut(s)	105, 181, 285, 774
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	320, 423
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	3 cut(s)	136, 465, 582
TaaI	ACNGT	6 cut(s)	35, 49, 118, 631, 658, 860
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	871
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	30, 360
Tru9I	TTAA	2 cut(s)	30, 360
TscAI	CASTG	3 cut(s)	415, 663, 751
TseI	GCWGC	4 cut(s)	221, 437, 440, 578
TspDTI	ATGAA	2 cut(s)	151, 627
TspGWI	ACGGA	2 cut(s)	618, 819
TspRI	CASTG	3 cut(s)	415, 663, 751
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	2 cut(s)	320, 423
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.