Rorug01G0363000

Biotin carboxyl carrier protein of acetyl-CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006727
Physical Location & Seq
Reverse (-)
47830854 .. 47831478
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0363000.1

Sequence Viewer

Length: 312 bp
ATGTCGGGTCGGGGCAAGGGCGGCAAGGGCCTGGGCAAAGGCGGAGCAAAACGACACCGTAAGGTCCTCCGCGACAACATCCAAGGCATCACCAAGCCCGCCATCCGCCGCCTCGCCCGCAGAGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGAACCCTCTACGGCTTCGGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Biotin_lipoyl

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-T_C PF15511 44 - 96 3.4e-08 Centromere kinetochore component CENP-T histone fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 264
AccII CGCG 3 cut(s) 72, 168, 204
AcyI GRCGYC 4 cut(s) 129, 171, 207, 258
AjnI CCWGG 2 cut(s) 30, 279
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 28, 145, 283
AspLEI GCGC 2 cut(s) 138, 279
AspS9I GGNCC 3 cut(s) 28, 64, 283
AsuHPI GGTGA 3 cut(s) 82, 205, 238
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 32, 281
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 280
BglII AGATCT 1 cut(s) 180
BisI GCNGC 6 cut(s) 22, 109, 127, 145, 169, 235
BlsI GCNGC 6 cut(s) 23, 110, 128, 146, 170, 236
Bme1390I CCNGG 2 cut(s) 32, 281
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 28, 64, 283
BmrFI CCNGG 2 cut(s) 32, 281
BmsI GCATC 2 cut(s) 96, 147
BpuEI CTTGAG 2 cut(s) 161, 257
BsaHI GRCGYC 4 cut(s) 129, 171, 207, 258
BsaJI CCNNGG 4 cut(s) 31, 82, 252, 280
BseBI CCWGG 2 cut(s) 32, 281
BseDI CCNNGG 4 cut(s) 31, 82, 252, 280
BseGI GGATG 3 cut(s) 78, 102, 198
BseRI GAGGAG 1 cut(s) 173
Bsh1236I CGCG 3 cut(s) 72, 168, 204
BshFI GGCC 3 cut(s) 30, 147, 285
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 3 cut(s) 30, 147, 285
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 3 cut(s) 30, 147, 285
BspFNI CGCG 3 cut(s) 72, 168, 204
BssECI CCNNGG 4 cut(s) 31, 82, 252, 280
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 4 cut(s) 129, 171, 207, 258
BssT1I CCWWGG 2 cut(s) 82, 252
Bst2UI CCWGG 2 cut(s) 32, 281
Bst4CI ACNGT 2 cut(s) 59, 244
BstACI GRCGYC 4 cut(s) 129, 171, 207, 258
BstC8I GCNNGC 4 cut(s) 99, 118, 228, 232
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 78, 102, 198
BstFNI CGCG 3 cut(s) 72, 168, 204
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 2 cut(s) 138, 279
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 6 cut(s) 21, 27, 117, 126, 135, 144
BstNI CCWGG 2 cut(s) 32, 281
BstSCI CCNGG 2 cut(s) 30, 279
BstUI CGCG 3 cut(s) 72, 168, 204
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 3 cut(s) 30, 147, 285
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 78, 102, 198
Cac8I GCNNGC 4 cut(s) 99, 118, 228, 232
CfoI GCGC 2 cut(s) 138, 279
Cfr13I GGNCC 3 cut(s) 28, 64, 283
CseI GACGC 3 cut(s) 118, 160, 215
CviAII CATG 1 cut(s) 253
CviJI RGCY 5 cut(s) 30, 97, 147, 285, 300
CviKI_1 RGCY 5 cut(s) 30, 97, 147, 285, 300
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EciI GGCGGA 2 cut(s) 57, 95
Eco130I CCWWGG 2 cut(s) 82, 252
Eco47I GGWCC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 2 cut(s) 28, 64
EcoRII CCWGG 2 cut(s) 30, 279
EcoT14I CCWWGG 2 cut(s) 82, 252
ErhI CCWWGG 2 cut(s) 82, 252
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FatI CATG 1 cut(s) 252
FauI CCCGC 3 cut(s) 106, 125, 239
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 22, 109, 127, 145, 169, 235
FokI GGATG 3 cut(s) 65, 89, 185
Fsp4HI GCNGC 6 cut(s) 22, 109, 127, 145, 169, 235
GlaI GCGC 2 cut(s) 137, 278
GluI GCNGC 6 cut(s) 22, 109, 127, 145, 169, 235
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 3 cut(s) 30, 147, 285
HgaI GACGC 3 cut(s) 118, 160, 215
HhaI GCGC 2 cut(s) 138, 279
Hin1I GRCGYC 4 cut(s) 129, 171, 207, 258
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 136, 277
HinP1I GCGC 2 cut(s) 136, 277
HphI GGTGA 3 cut(s) 82, 205, 238
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 178, 190
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 209, 263
HpyCH4III ACNGT 2 cut(s) 59, 244
HpyCH4IV ACGT 2 cut(s) 195, 258
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 27, 117, 126, 135, 144
HpySE526I ACGT 2 cut(s) 195, 258
Hsp92I GRCGYC 4 cut(s) 129, 171, 207, 258
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 136, 277
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 17, 44, 266, 293
LweI GCATC 2 cut(s) 96, 147
MaeII ACGT 2 cut(s) 195, 258
MaeIII GTNAC 2 cut(s) 211, 244
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 228
MnlI CCTC 9 cut(s) 77, 116, 122, 151, 158, 185, 197, 281, 302
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 32, 281
MvaI CCWGG 2 cut(s) 32, 281
MvnI CGCG 3 cut(s) 72, 168, 204
MwoI GCNNNNNNNGC 6 cut(s) 21, 27, 117, 126, 135, 144
NcoI CCATGG 1 cut(s) 252
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 211, 244
PaeR7I CTCGAG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PflFI GACNNNGTC 2 cut(s) 209, 260
PkrI GCNGC 6 cut(s) 23, 110, 128, 146, 170, 236
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 30, 279
PspGI CCWGG 2 cut(s) 30, 279
PspPI GGNCC 3 cut(s) 28, 64, 283
PspPPI RGGWCCY 1 cut(s) 64
PsuI RGATCY 1 cut(s) 180
PsyI GACNNNGTC 2 cut(s) 209, 260
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 6 cut(s) 22, 109, 127, 145, 169, 235
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 3 cut(s) 28, 64, 283
ScrFI CCNGG 2 cut(s) 32, 281
SduI GDGCHC 1 cut(s) 228
SetI ASST 4 cut(s) 66, 198, 218, 261
SfaNI GCATC 2 cut(s) 96, 147
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 3 cut(s) 176, 188, 272
SmoI CTYRAG 3 cut(s) 176, 188, 272
StyD4I CCNGG 2 cut(s) 30, 279
StyI CCWWGG 2 cut(s) 82, 252
TaaI ACNGT 2 cut(s) 59, 244
TaiI ACGT 2 cut(s) 198, 261
TaqI TCGA 1 cut(s) 189
TauI GCSGC 6 cut(s) 24, 111, 129, 147, 171, 237
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 2 cut(s) 211, 244
Tsp45I GTSAC 2 cut(s) 211, 244
Tth111I GACNNNGTC 2 cut(s) 209, 260
VpaK11BI GGWCC 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 264
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.