Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006727

Physical Location & Seq

Genomic Coordinates Forward (+)

22675878 .. 22679571

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20670.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGTCCTCCGCCGCTGTCCGATCCTTCAACTGTTCTGTAGGCACGGTTTCCCATGTCGGGTCCTTGCTTGACAAGCGTGGTATGTTGCCTGTGTACAATACCAGAATGCCCACTCCAAGTAGATCATATTTCCAAGGCTTGATGGTTAGTGAGAAGTTCATTTATTCTTCACAAAAGCGAAAGGGAGTGCTAGTATCATGTGTGAAGACATCTGAAGCTGCTAAGACTGAAAATTCCAGCGATAGTAAACCACAACACTCATCAGAGAAAGCTGCCCATCCCACAATTTTTCCTAGTGGATTTGAGGCACTGATGCTAGAAGTCTGTGATGAGACAGAGGTTGCTGAACTGAAACTTAAGGTTGGAGACTTTGAAATGCATTTGAAGCGGAATATTGCAGTCACCAGTGCTCCAGTGCCTAGCATCTCACCAGCAACACCACCACCTGTTCCATCTAAACGTATGGATTCAACTCCTGCTCCCCCTCCAGCATCACCACCAAAAACTTCTGAAAAAACCACTCCATTTACAAACGTATCTGTAGACAAGTTATCAAGGTTAGCAGCCTTGGAGGCTTCTGGTGCTAAGGGATATGATCTGGTTTCTTCTCCTACGGTTGGTTCATTCCGCAGGGGAAGAACGGTGAAAGGAAAGAAGCAACCTCCCATCTTTAAAGAGGGTGATTTGATAAAAAAAGGACAGGTAATCGGATATGTGGATCAGTTTGGCACCGAACTTCCTGTGAAGACTGATGTGGGTGGAGAAGTTTTGAAGCTCCTCTTCAACGACGGAGAAGCAGTTGGTTTCGGAGACCCCCTTATTGCTGTCTTGCCCTCATTTGCCGGTATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

286

Amino Acids

30.44

Weight (kDa)

9.11

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56130 AT3G56130 AT3G56130 AT3G56130 AT3G56130
fragaria_vesca	FvH4_7g25371 FvH4_7g25371 FvH4_7g25371 FvH4_7g25371
malus_domestica	MD01G1159900.v1.1 MD07G1228300.v1.1
prunus_persica	Prupe.2G257900_v2.0.a1
pyrus_communis	pycom01g17630 pycom07g20670
rosa_chinensis	RchiOBHm_Chr1g0371301
rosa_laevigata	RLG00000026972
rosa_multiflora	Rmu_ssc0000159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285800
rosa_rugosa	Rorug01G0362900 Rorug01G0362900 Rorug01G0363000
rosa_samantha	Rh1AG372900 Rh1BG336400 Rh1CG349800 Rh1DG367500
rosa_wichuraiana	Rw1G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	4 cut(s)	12, 15, 391, 631
AclWI	GGATC	2 cut(s)	18, 729
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	60, 620
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	31, 377, 388, 474, 775, 787
AluBI	AGCT	3 cut(s)	221, 275, 778
AluI	AGCT	3 cut(s)	221, 275, 778
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	329, 363, 807
AlwI	GGATC	2 cut(s)	18, 729
ApeKI	GCWGC	3 cut(s)	221, 275, 566
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	5 cut(s)	397, 423, 489, 658, 695
AvaII	GGWCC	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	215, 755
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	208, 262, 578
BccI	CCATC	4 cut(s)	139, 288, 463, 677
BcoDI	GTCTC	3 cut(s)	329, 363, 807
BfaI	CTAG	4 cut(s)	194, 297, 320, 423
BfmI	CTRYAG	2 cut(s)	39, 543
BfrI	CTTAAG	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	15, 222, 276, 567
BlsI	GCNGC	4 cut(s)	16, 223, 277, 568
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	64, 733
BmsI	GCATC	3 cut(s)	306, 435, 503
BpiI	GAAGAC	2 cut(s)	215, 755
BpmI	CTGGAG	2 cut(s)	399, 474
Bpu10I	CCTNAGC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	2 cut(s)	136, 570
BsaXI	ACNNNNNCTCC	8 cut(s)	180, 210, 397, 427, 466, 496, 786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 620
Bse118I	RCCGGY	1 cut(s)	845
Bse1I	ACTGG	3 cut(s)	408, 416, 853
BseDI	CCNNGG	2 cut(s)	136, 570
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	60, 620
BseNI	ACTGG	3 cut(s)	408, 416, 853
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	3 cut(s)	208, 262, 578
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	846
BslI	CCNNNNNNNGG	2 cut(s)	60, 620
BsmAI	GTCTC	3 cut(s)	329, 363, 807
BsmI	GAATGC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	807
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	23, 125, 598, 721
BspACI	CCGC	4 cut(s)	12, 15, 391, 631
BspLI	GGNNCC	2 cut(s)	64, 733
BspPI	GGATC	2 cut(s)	18, 729
BspT107I	GGYRCC	1 cut(s)	731
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	845
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	408, 416, 853
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	2 cut(s)	136, 570
BssMI	GATC	4 cut(s)	23, 125, 598, 721
BssT1I	CCWWGG	2 cut(s)	136, 570
Bst4CI	ACNGT	4 cut(s)	35, 49, 619, 646
Bst6I	CTCTTC	1 cut(s)	788
BstAFI	CTTAAG	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	225, 588
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	4 cut(s)	26, 128, 601, 724
BstMAI	GTCTC	3 cut(s)	329, 363, 807
BstMBI	GATC	4 cut(s)	23, 125, 598, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 388, 575, 584
BstSFI	CTRYAG	2 cut(s)	39, 543
BstV1I	GCAGC	3 cut(s)	208, 262, 578
BstV2I	GAAGAC	2 cut(s)	215, 755
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	311, 415, 423
Cfr10I	RCCGGY	1 cut(s)	845
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	56, 201
CviJI	RGCY	6 cut(s)	141, 221, 275, 569, 578, 778
CviKI_1	RGCY	6 cut(s)	141, 221, 275, 569, 578, 778
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	225, 588
DpnI	GATC	4 cut(s)	25, 127, 600, 723
DpnII	GATC	4 cut(s)	23, 125, 598, 721
DraI	TTTAAA	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco130I	CCWWGG	2 cut(s)	136, 570
Eco31I	GGTCTC	1 cut(s)	807
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	136, 570
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	136, 570
FaeI	CATG	2 cut(s)	59, 204
FaiI	YATR	7 cut(s)	57, 86, 130, 202, 467, 597, 717
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	2 cut(s)	55, 200
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	15, 222, 276, 567
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	15, 222, 276, 567
FspBI	CTAG	4 cut(s)	194, 297, 320, 423
GluI	GCNGC	4 cut(s)	15, 222, 276, 567
GsuI	CTGGAG	2 cut(s)	399, 474
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	2 cut(s)	59, 204
HinfI	GANTC	2 cut(s)	5, 470
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	5 cut(s)	397, 423, 489, 658, 695
Hpy166II	GTNNAC	3 cut(s)	97, 251, 547
Hpy188I	TCNGA	6 cut(s)	23, 217, 268, 514, 713, 812
Hpy8I	GTNNAC	3 cut(s)	97, 251, 547
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	4 cut(s)	35, 49, 619, 646
HpyCH4IV	ACGT	2 cut(s)	463, 537
HpyCH4V	TGCA	2 cut(s)	382, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 388, 575, 584
HpyF3I	CTNAG	2 cut(s)	225, 588
HpySE526I	ACGT	2 cut(s)	463, 537
Hsp92II	CATG	2 cut(s)	59, 204
Kzo9I	GATC	4 cut(s)	23, 125, 598, 721
LmnI	GCTCC	3 cut(s)	418, 487, 783
Lsp1109I	GCAGC	3 cut(s)	208, 262, 578
LweI	GCATC	3 cut(s)	306, 435, 503
MaeI	CTAG	4 cut(s)	194, 297, 320, 423
MaeII	ACGT	2 cut(s)	463, 537
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	25, 127, 600, 723
MboI	GATC	4 cut(s)	23, 125, 598, 721
MboII	GAAGA	6 cut(s)	162, 220, 600, 651, 760, 775
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	2 cut(s)	235, 288
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	19, 301, 334, 498, 568, 673, 675, 791, 847
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	2 cut(s)	360, 675
MspA1I	CMGCKG	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	76, 388, 575, 584
NdeII	GATC	4 cut(s)	23, 125, 598, 721
NlaIII	CATG	2 cut(s)	59, 204
NlaIV	GGNNCC	2 cut(s)	64, 733
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	16, 223, 277, 568
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	64, 733
PspPI	GGNCC	1 cut(s)	63
PspPPI	RGGWCCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	360, 675
SatI	GCNGC	4 cut(s)	15, 222, 276, 567
Sau3AI	GATC	4 cut(s)	23, 125, 598, 721
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	3 cut(s)	306, 435, 503
SfcI	CTRYAG	2 cut(s)	39, 543
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	235, 288
SsiI	CCGC	4 cut(s)	12, 15, 391, 631
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	194, 297, 320, 423
StyI	CCWWGG	2 cut(s)	136, 570
TaaI	ACNGT	4 cut(s)	35, 49, 619, 646
TaiI	ACGT	2 cut(s)	466, 540
TasI	AATT	2 cut(s)	235, 288
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	360, 675
Tru9I	TTAA	2 cut(s)	360, 675
TscAI	CASTG	3 cut(s)	318, 415, 423
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	221, 275, 566
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	151, 615
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	3 cut(s)	318, 415, 423
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	4 cut(s)	194, 297, 320, 423
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.