FvH4_7g25911

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015694
Physical Location & Seq
Reverse (-)
19713259 .. 19713946
688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25911.t1

Sequence Viewer

Length: 309 bp
ATGGCTCCTGAGGCAATTGATGGACATTCATCTGCTGAATCTGACGTCTACAGTTTTGGTGTGTTAGTCGTGGAGATAGCAAGTGGACAAGAAATCAGCAGTTTGCCTTCCGAAAAGCTAAATGAGAAGGATCTTATGAGTTTTATGCTTAGTCATTCTTCTGCTGTCCCTCGAGCTCCACCTTATAAATATAGGGACGGTAGCTTCGGGATCATTGGTGTTTCTGATACAGTAACGTCTGGGGCAAAAGTTCCATCCTTCATTCCAAAGATGCGGACCGGCGTCATGAGAAAGATAGGTAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

103

Amino Acids

10.92

Weight (kDa)

6.72

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 49 9.9e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AatII GACGTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 138, 218
AcyI GRCGYC 2 cut(s) 45, 282
AluBI AGCT 3 cut(s) 118, 176, 204
AluI AGCT 3 cut(s) 118, 176, 204
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 2 cut(s) 138, 218
Ama87I CYCGRG 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspS9I GGNCC 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 9
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 2 cut(s) 14, 262
BfmI CTRYAG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 261
BoxI GACNNNNGTC 1 cut(s) 281
BsaHI GRCGYC 2 cut(s) 45, 282
Bse118I RCCGGY 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 2 cut(s) 152, 209
BsmFI GGGAC 2 cut(s) 152, 209
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 130, 210
BspACI CCGC 1 cut(s) 274
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 138, 218
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 2 cut(s) 130, 210
BssNI GRCGYC 2 cut(s) 45, 282
Bst4CI ACNGT 3 cut(s) 53, 200, 232
BstACI GRCGYC 2 cut(s) 45, 282
BstDEI CTNAG 2 cut(s) 9, 149
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 2 cut(s) 133, 213
BstMBI GATC 2 cut(s) 130, 210
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 254
CciI TCATGA 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 276
CpoI CGGWCCG 1 cut(s) 276
CseI GACGC 1 cut(s) 271
CspI CGGWCCG 1 cut(s) 276
CviAII CATG 1 cut(s) 286
CviJI RGCY 4 cut(s) 5, 118, 176, 204
CviKI_1 RGCY 4 cut(s) 5, 118, 176, 204
DdeI CTNAG 2 cut(s) 9, 149
DpnI GATC 2 cut(s) 132, 212
DpnII GATC 2 cut(s) 130, 210
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 137, 146, 186, 192, 287
FaqI GGGAC 2 cut(s) 152, 209
FatI CATG 1 cut(s) 285
FblI GTMKAC 1 cut(s) 48
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 178
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 2 cut(s) 45, 282
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 2 cut(s) 49, 86
Hpy188I TCNGA 3 cut(s) 43, 112, 226
Hpy188III TCNNGA 3 cut(s) 8, 208, 286
Hpy8I GTNNAC 2 cut(s) 49, 86
HpyAV CCTTC 3 cut(s) 117, 121, 268
HpyCH4III ACNGT 3 cut(s) 53, 200, 232
HpyCH4IV ACGT 2 cut(s) 45, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 9, 149
HpySE526I ACGT 2 cut(s) 45, 236
Hsp92I GRCGYC 2 cut(s) 45, 282
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 130, 210
LmnI GCTCC 2 cut(s) 10, 181
LpnPI CCDG 3 cut(s) 21, 225, 292
LweI GCATC 1 cut(s) 261
MaeII ACGT 2 cut(s) 45, 236
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 132, 212
MboI GATC 2 cut(s) 130, 210
MboII GAAGA 1 cut(s) 150
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 15, 304
MnlI CCTC 2 cut(s) 4, 180
MspI CCGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 130, 210
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 171
PagI TCATGA 1 cut(s) 285
PfeI GAWTC 1 cut(s) 38
PshAI GACNNNNGTC 1 cut(s) 281
PsiI TTATAA 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 276
PspXI VCTCGAGB 1 cut(s) 171
PsuI RGATCY 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 276
RsrII CGGWCCG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 130, 210
Sau96I GGNCC 1 cut(s) 276
SduI GDGCHC 1 cut(s) 178
SetI ASST 7 cut(s) 48, 120, 178, 184, 206, 239, 301
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 2 cut(s) 15, 304
SsiI CCGC 1 cut(s) 274
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 3 cut(s) 53, 200, 232
TaiI ACGT 2 cut(s) 48, 239
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 15, 304
TfiI GAWTC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 18, 250
VpaK11BI GGWCC 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 48
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.