Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Reverse (-)

47578928 .. 47582934

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG342500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTTCCCTCACGTCTATTCCTTTCTCCCATTTTGTTTCTGATCATAATCACTAGCACCACCGATCAAGCGGCCGCCCTTGCTCAGCCGCAGCCAGCAGCTGATCATCTGCTAAGCCACTTCTGTTCAAACCACAAAGGTAACTACACCACGACGGGTGCGTATCGCACAAACCTTAACCACCTTCTCTCATCCCTTCCCTTCAAGGGTAGCGGCCACGGCTTTTATAGTTCTTCATATGGCCGAAACACTACATCCGGCGCAATATATGCAATCGGACTATGTAAAGGAGACATTGGAACCACGCGTCACTGCCTTCATTGCCTCAATACCTCTAGAAGTGCTCTCATGGAGCTTTGTGCCAATCAGAAGGAAGCTATTGTTTGGTACGACAACTGCATGCTGCGTTACTCAAACCGCTCCCTATATGGCGTCATGGACACGCTGCCTGCTTTACATTTGTGGAGCACTCAAAGCGTACCATCATCGGAGTTTGATGTATTTTTCCGGCAGCTCAGGTGGTTACTAGAAGCCCTAAGAAACAAAGCGGCGAAAGGGGGTTCTCTTAAGTTTGCGAAAAACAACGCAACCATTCTCAACTATAGTAACGGACTGTCTTCCTTAACGGCACTTGTGCACTGCACGCCTGATTTGTCCGAGTTACAGTGCAGCACTTGCTTACTTGGTGCTTTTGAAGAACTCCCAAAATGTTGTGATGGAAAGGAAGGTGGGCGAGTTCTTAGACCCAGCTGTAACTTCAACTATCAGCTGAACCAGGTTATTGAGGTCAATGAACCGAAAGGTTCCGTGATTCCCAACTTAGATTACACATTTGAAAAAGCTTTTGACAGAAACCTGGTTTCTGTCAAAAATGGACGCAGCAGTAGCACAGAACACGACCGTAGTGGTTGCTTTTGTGCTAAAGAAAATGGACAAGAAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

315

Amino Acids

34.79

Weight (kDa)

8.61

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	42 - 140	5.8e-22	Salt stress response/antifungal
Stress-antifung	PF01657	166 - 256	2.5e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	420
AccII	CGCG	1 cut(s)	307
AciI	CCGC	6 cut(s)	71, 75, 89, 213, 418, 548
AcoI	YGGCCR	3 cut(s)	72, 214, 241
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	2 cut(s)	389, 480
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	129, 205, 695, 760, 836
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	774, 855
AluBI	AGCT	7 cut(s)	101, 355, 377, 514, 750, 769, 842
AluI	AGCT	7 cut(s)	101, 355, 377, 514, 750, 769, 842
Alw21I	GWGCWC	3 cut(s)	346, 470, 639
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	72, 214, 241
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	7 cut(s)	91, 98, 403, 445, 511, 669, 879
AspLEI	GCGC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	3 cut(s)	346, 470, 639
BbvI	GCAGC	7 cut(s)	103, 110, 390, 432, 523, 681, 891
BccI	CCATC	2 cut(s)	490, 710
BceAI	ACGGC	2 cut(s)	235, 642
BciT130I	CCWGG	2 cut(s)	776, 857
BclI	TGATCA	2 cut(s)	42, 103
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	54, 336, 527
BfmI	CTRYAG	1 cut(s)	601
BfrI	CTTAAG	1 cut(s)	566
BlpI	GCTNAGC	2 cut(s)	84, 113
Bme1390I	CCNGG	2 cut(s)	776, 857
BmgBI	CACGTC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	6, 301, 805
BmrFI	CCNGG	2 cut(s)	776, 857
BpiI	GAAGAC	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	515
Bpu1102I	GCTNAGC	2 cut(s)	84, 113
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	776, 857
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	191, 254
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	98, 529
BseSI	GKGCMC	1 cut(s)	639
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	7 cut(s)	103, 110, 390, 432, 523, 681, 891
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	2 cut(s)	625, 688
Bsh1236I	CGCG	1 cut(s)	307
Bsh1285I	CGRYCG	2 cut(s)	75, 901
BshFI	GGCC	3 cut(s)	74, 216, 243
BsiEI	CGRYCG	2 cut(s)	75, 901
BsiHKAI	GWGCWC	3 cut(s)	346, 470, 639
BsiSI	CCGG	2 cut(s)	258, 508
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	74, 216, 243
Bsp1286I	GDGCHC	3 cut(s)	346, 470, 639
Bsp143I	GATC	3 cut(s)	42, 64, 103
Bsp1720I	GCTNAGC	2 cut(s)	84, 113
BspACI	CCGC	6 cut(s)	71, 75, 89, 213, 418, 548
BspANI	GGCC	3 cut(s)	74, 216, 243
BspCNI	CTCAG	2 cut(s)	97, 528
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	6, 301, 805
BspTI	CTTAAG	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	42, 64, 103
BssNI	GRCGYC	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	776, 857
Bst4CI	ACNGT	3 cut(s)	615, 666, 902
BstACI	GRCGYC	1 cut(s)	432
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	2 cut(s)	269, 675
BstC8I	GCNNGC	4 cut(s)	96, 401, 450, 644
BstDEI	CTNAG	6 cut(s)	84, 113, 515, 536, 740, 820
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	191, 254
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	3 cut(s)	45, 67, 106
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	3 cut(s)	42, 64, 103
BstMCI	CGRYCG	2 cut(s)	75, 901
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 219, 269, 321, 474, 643, 675, 885
BstNI	CCWGG	2 cut(s)	776, 857
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	774, 855
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	7 cut(s)	103, 110, 390, 432, 523, 681, 891
BstV2I	GAAGAC	1 cut(s)	609
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	74, 216, 243
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	191, 254
BtsI	GCAGTG	2 cut(s)	310, 637
BtsIMutI	CAGTG	3 cut(s)	310, 637, 671
Cac8I	GCNNGC	4 cut(s)	96, 401, 450, 644
CaiI	CAGNNNCTG	1 cut(s)	101
CciNI	GCGGCCGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	3 cut(s)	296, 421, 885
CsiI	ACCWGGT	2 cut(s)	774, 855
Csp6I	GTAC	2 cut(s)	388, 479
CviAII	CATG	3 cut(s)	349, 400, 436
CviQI	GTAC	2 cut(s)	388, 479
DdeI	CTNAG	6 cut(s)	84, 113, 515, 536, 740, 820
DpnI	GATC	3 cut(s)	44, 66, 105
DpnII	GATC	3 cut(s)	42, 64, 103
EaeI	YGGCCR	3 cut(s)	72, 214, 241
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	774, 855
FaeI	CATG	3 cut(s)	352, 403, 439
FatI	CATG	3 cut(s)	348, 399, 435
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	2 cut(s)	42, 103
FokI	GGATG	2 cut(s)	178, 241
FspBI	CTAG	3 cut(s)	54, 336, 527
GlaI	GCGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	74, 216, 243
HapII	CCGG	2 cut(s)	258, 508
HgaI	GACGC	3 cut(s)	296, 421, 885
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	352, 403, 439
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	1 cut(s)	811
HpaII	CCGG	2 cut(s)	258, 508
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	5 cut(s)	42, 278, 369, 490, 658
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	6 cut(s)	194, 206, 211, 326, 364, 719
HpyCH4III	ACNGT	3 cut(s)	615, 666, 902
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	5 cut(s)	272, 399, 637, 642, 669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 219, 269, 321, 474, 643, 675, 885
HpyF3I	CTNAG	6 cut(s)	84, 113, 515, 536, 740, 820
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	352, 403, 439
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	42, 103
Kzo9I	GATC	3 cut(s)	42, 64, 103
LmnI	GCTCC	3 cut(s)	352, 425, 465
Lsp1109I	GCAGC	7 cut(s)	103, 110, 390, 432, 523, 681, 891
MabI	ACCWGGT	2 cut(s)	774, 855
MaeI	CTAG	3 cut(s)	54, 336, 527
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	7 cut(s)	140, 308, 407, 522, 605, 660, 752
MalI	GATC	3 cut(s)	44, 66, 105
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	3 cut(s)	42, 64, 103
MboII	GAAGA	3 cut(s)	225, 609, 707
MhlI	GDGCHC	3 cut(s)	346, 470, 639
MluI	ACGCGT	1 cut(s)	305
MnlI	CCTC	5 cut(s)	19, 335, 343, 778, 936
MseI	TTAA	3 cut(s)	177, 567, 623
MspA1I	CMGCKG	3 cut(s)	101, 750, 769
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	2 cut(s)	258, 508
MspR9I	CCNGG	2 cut(s)	776, 857
MvaI	CCWGG	2 cut(s)	776, 857
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	8 cut(s)	80, 219, 269, 321, 474, 643, 675, 885
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	3 cut(s)	42, 64, 103
NlaIII	CATG	3 cut(s)	352, 403, 439
NlaIV	GGNNCC	3 cut(s)	6, 301, 805
NmuCI	GTSAC	1 cut(s)	308
NotI	GCGGCCGC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	403
PaeI	GCATGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	811
Psp6I	CCWGG	2 cut(s)	774, 855
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	774, 855
PspN4I	GGNNCC	3 cut(s)	6, 301, 805
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	3 cut(s)	101, 750, 769
RsaI	GTAC	2 cut(s)	389, 480
RsaNI	GTAC	2 cut(s)	388, 479
SaqAI	TTAA	3 cut(s)	177, 567, 623
Sau3AI	GATC	3 cut(s)	42, 64, 103
ScrFI	CCNGG	2 cut(s)	776, 857
SduI	GDGCHC	3 cut(s)	346, 470, 639
SexAI	ACCWGGT	2 cut(s)	774, 855
SfcI	CTRYAG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	403
SsiI	CCGC	6 cut(s)	71, 75, 89, 213, 418, 548
SspMI	CTAG	3 cut(s)	54, 336, 527
StyD4I	CCNGG	2 cut(s)	774, 855
TaaI	ACNGT	3 cut(s)	615, 666, 902
TaiI	ACGT	1 cut(s)	16
TauI	GCSGC	5 cut(s)	74, 77, 91, 216, 551
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	3 cut(s)	177, 567, 623
Tru9I	TTAA	3 cut(s)	177, 567, 623
TscAI	CASTG	3 cut(s)	317, 644, 671
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	7 cut(s)	91, 98, 403, 445, 511, 669, 879
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	225, 308, 807
TspGWI	ACGGA	2 cut(s)	624, 796
TspRI	CASTG	3 cut(s)	317, 644, 671
Vha464I	CTTAAG	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	3 cut(s)	54, 336, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.