Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Forward (+)

6950176 .. 6953182

Gene Structure 3007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGTTTCCTCACGTCTATTCCTTTCTCCCATTTTGTTACTGATCATCATCGTTAGTACCCATGATCAAGCTACCACCCTTGCTCAGCCGCAGCCGGCTGATCTGCCAAATCACTTCTGTTCAAACGACAATGGTAACTACACCACGACCGACTCCTATGGCACAAACCTTAACCACCTTCTCTCATCCCTTCCCTCTACCAAGGGCAACGGCTTTGGCTTTTACAATTCCTCCTATGGCGGAAATACATCATCCGAGGCAATATATGCAATCGGACTGTGTAAAGGAGATATCGGAACCACAAGCGACTGCCTTCAATGCCTCAATGCATCTAGAAGTGCTCTCATGGAGCTCTGTCCCAATCAGAAGGAGGCCATTATTTGGTACGACAACTGCATGCTGCGCTACTCAAACCGCTCCATATATGGTGTCATGGAAACGCAGCCAACTTTTGATACGTGGAGCACACAAAGGGTACCACCATCCAAATTCGATATGTTTTATCATAATCTCACCATCTTACTCGAAAGATTAGGAATTGAAGCTGCAGCTGGTGATTCTCTGAAGTTTGCGAAAGATAACGCAACCATTTTCAACTATAGTAACGGCGGACTGGCATCCTTAACGGCACTTGTGCAGTGCACTCCTGATTTGTCCGAGTTACAGTGCAGGACTTGCTTAATTGGGGCTTTTGAAGAACTCCCGGATTGTTGTGATGGAAAGGAAGGTGGGCGAGTTCTTAGACCCAGCTGTAACTTCAACTATCACCAGGTTGACCCGACCGATACCACAATTCCCGAGTCAGGATCTCCAAGTGAAAGCCCTGGGATAGCTCCAAATAAGTTCGATAGAGGTGGGAAGTCTGGAACTGCAACTGGTATCGTTATACTATTTGCAATGGTTGTTTCTGTTGGACTAATGATCTCCGTAGGCATCTACATGTCAGTCAAGAAGGGAAGGCCACAACCTATCCCAGGAATGCAACCTAATAGTTTTGAGACAATGGAATCCTTGCAATTCGACTGTGGCGACATTCGAGTTGCCACAAATAACTTTTCTGAAGCAAATAAACTTGGAGATGATGAATATGGCACTGTTTACAGGGGTAGTCTTTCCAACGACAAAAGCATAGCAGTGAGGAGGCTTTCAATAAATTATGTGAAAGAGTATCCGGAAATTAAGAAAGAGGTTTTGTCAATGGCGCCCAAGCTTCAACATCCAAATCTAGTTGAGCTCCTAGGGTGTGCCTTGGAAGAAAATTCTGAAAGGCTTCTTGTCTACGAGCTTTTCCCTAACGCAAATCTTGATCGCATCATATTTGACCGGATGCAGAGCAGACAATGGGATTGGGAGATGCGGTACAACATCATAGTGAGCATTGCACGGGGACTCCTTCACCTTCATGACAGTCACTTTGTTCATGGCGATGTCAACGCTAGTAACATTTTGGTAGATGCAGAAATGAATCCCAAAATTTCAAAGTTTGGCATGGCAAGATTCTTTGCGGTTGATCAAATACAAGGCAACGTTAACGGAATTCATATACTGAATCTGATGTCTAACACATACATGGCTCCAGAGGCAATTGTTGGACATTCATCTGCAGAATCTGATATCTACAGTTTTGGTGCGTTAGTCGTGGAGATAGTGAGTGGACAAGAAATTAGTAGTTTGGCTTCCGAAAAGCTAAATGAGGAGGATCTTCTGAGATTTGCATGGAAAAATTGGGCAGAAGGGACAATTAGAAATCTAATAGATCCGACGTTGTGGACTGGTTCAGGAATTGAATTAATGGAGAGATGCATCAGGATCGGATTATTGTGTATGCAGAGGACTAGAACCGATAGGCCAACCATGTCTTCTGTTATTCAGATGCTTAGTCATTCTTCCGCTGTCCCTCTACCTAATAAATTTAGGCATGGTAGCTTTGGGATCATTGGAACCTTGAACAATGTGGAAGGTATTTCTGATCCAAGATCTAGAGCAGAAGTTCAACCCTTCATTGCGAAGATGCGGTGTGCCACTACCGGTATCATCGATAAGATACGTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

686

Amino Acids

75.7

Weight (kDa)

5.62

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	40 - 139	4.8e-24	Salt stress response/antifungal
Stress-antifung	PF01657	165 - 256	4.8e-09	Salt stress response/antifungal
Pkinase	PF00069	353 - 624	1.3e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	355 - 625	8.4e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	2 cut(s)	475, 1201
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	1278
AccIII	TCCGGA	1 cut(s)	1171
AciI	CCGC	8 cut(s)	89, 240, 415, 609, 1357, 1505, 1890, 2014
AclI	AACGTT	1 cut(s)	1527
AclWI	GGATC	6 cut(s)	814, 1707, 1751, 1817, 1940, 1964
AcsI	RAATTY	5 cut(s)	488, 1258, 1473, 1536, 1910
AcuI	CTGAAG	2 cut(s)	584, 1080
AcyI	GRCGYC	1 cut(s)	1202
AfaI	GTAC	4 cut(s)	58, 386, 477, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	381, 803, 974
AflIII	ACRYGT	1 cut(s)	939
AgeI	ACCGGT	1 cut(s)	2027
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	3 cut(s)	768, 823, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	1843, 1875
Alw21I	GWGCWC	5 cut(s)	343, 354, 467, 644, 1236
Alw26I	GTCTC	1 cut(s)	992
Alw44I	GTGCAC	1 cut(s)	640
AlwI	GGATC	6 cut(s)	814, 1707, 1751, 1817, 1940, 1964
AlwNI	CAGNNNCTG	1 cut(s)	1610
Ama87I	CYCGRG	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	1171
AoxI	GGCC	3 cut(s)	372, 959, 1847
ApaLI	GTGCAC	1 cut(s)	640
ApeKI	GCWGC	5 cut(s)	91, 400, 442, 545, 548
ApoI	RAATTY	5 cut(s)	488, 1258, 1473, 1536, 1910
ArsI	GACNNNNNNTTYG	2 cut(s)	1397, 1429
AseI	ATTAAT	1 cut(s)	1790
AsiGI	ACCGGT	1 cut(s)	2027
Asp700I	GAANNNNTTC	1 cut(s)	1269
Asp718I	GGTACC	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	1237
AspLEI	GCGC	2 cut(s)	405, 1204
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	4 cut(s)	505, 566, 758, 1388
AvaI	CYCGRG	1 cut(s)	797
AvrII	CCTAGG	1 cut(s)	1237
BaeGI	GKGCMC	1 cut(s)	644
BanI	GGYRCC	2 cut(s)	475, 1201
BanII	GRGCYC	2 cut(s)	354, 1236
BarI	GAAGNNNNNNTAC	2 cut(s)	1660, 1692
BbsI	GAAGAC	1 cut(s)	1851
Bbv12I	GWGCWC	5 cut(s)	343, 354, 467, 644, 1236
BbvI	GCAGC	5 cut(s)	103, 387, 454, 532, 560
BccI	CCATC	3 cut(s)	490, 524, 710
BceAI	ACGGC	3 cut(s)	226, 622, 642
BcgI	CGANNNNNNTGC	2 cut(s)	1792, 1826
BciT130I	CCWGG	3 cut(s)	770, 825, 975
BciVI	GTATCC	1 cut(s)	1179
BclI	TGATCA	3 cut(s)	42, 64, 1510
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	992
BfaI	CTAG	6 cut(s)	333, 1226, 1238, 1437, 1836, 1980
BfmI	CTRYAG	4 cut(s)	546, 598, 1602, 1618
BfoI	RGCGCY	1 cut(s)	1205
BfuI	GTATCC	1 cut(s)	1179
BglII	AGATCT	1 cut(s)	1976
BisI	GCNGC	6 cut(s)	89, 92, 401, 443, 546, 549
BlnI	CCTAGG	1 cut(s)	1237
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	6 cut(s)	90, 93, 402, 444, 547, 550
Bme1390I	CCNGG	4 cut(s)	704, 770, 825, 975
BmeT110I	CYCGRG	1 cut(s)	797
BmgBI	CACGTC	1 cut(s)	14
BmiI	GGNNCC	5 cut(s)	298, 477, 1203, 1575, 1942
BmrFI	CCNGG	4 cut(s)	704, 770, 825, 975
BpiI	GAAGAC	1 cut(s)	1851
BpmI	CTGGAG	1 cut(s)	1560
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	2037
BsaAI	YACGTR	2 cut(s)	459, 2048
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	1202
BsaJI	CCNNGG	7 cut(s)	201, 255, 823, 824, 973, 1237, 1248
BsaWI	WCCGGW	3 cut(s)	1171, 1323, 2027
BsaXI	ACNNNNNCTCC	6 cut(s)	215, 245, 1343, 1373, 1374, 1404
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 803, 974
Bse118I	RCCGGY	2 cut(s)	94, 2027
Bse1I	ACTGG	3 cut(s)	618, 880, 1777
Bse3DI	GCAATG	3 cut(s)	903, 1377, 2001
Bse8I	GATNNNNATC	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	1171
BseBI	CCWGG	3 cut(s)	770, 825, 975
BseCI	ATCGAT	1 cut(s)	2037
BseDI	CCNNGG	7 cut(s)	201, 255, 823, 824, 973, 1237, 1248
BseGI	GGATG	6 cut(s)	185, 251, 482, 617, 1216, 1332
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	381, 803, 974
BseMI	GCAATG	3 cut(s)	903, 1377, 2001
BseMII	CTCAG	2 cut(s)	98, 1697
BseNI	ACTGG	3 cut(s)	618, 880, 1777
BseRI	GAGGAG	2 cut(s)	1153, 1709
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	5 cut(s)	103, 387, 454, 532, 560
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	2 cut(s)	656, 688
Bsh1285I	CGRYCG	2 cut(s)	150, 783
BshFI	GGCC	3 cut(s)	374, 961, 1849
BshNI	GGYRCC	2 cut(s)	475, 1201
BshTI	ACCGGT	1 cut(s)	2027
BshVI	ATCGAT	1 cut(s)	2037
BsiEI	CGRYCG	2 cut(s)	150, 783
BsiHKAI	GWGCWC	5 cut(s)	343, 354, 467, 644, 1236
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	5 cut(s)	95, 704, 1172, 1324, 2028
BslFI	GGGAC	4 cut(s)	342, 1401, 1750, 1880
BslI	CCNNNNNNNGG	3 cut(s)	381, 803, 974
BsmAI	GTCTC	1 cut(s)	992
BsmFI	GGGAC	4 cut(s)	342, 1401, 1750, 1880
BsmI	GAATGC	1 cut(s)	984
BsnI	GGCC	3 cut(s)	374, 961, 1849
BsoBI	CYCGRG	1 cut(s)	797
Bsp1286I	GDGCHC	5 cut(s)	343, 354, 467, 644, 1236
Bsp13I	TCCGGA	1 cut(s)	1171
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	8 cut(s)	89, 240, 415, 609, 1357, 1505, 1890, 2014
BspANI	GGCC	3 cut(s)	374, 961, 1849
BspCNI	CTCAG	2 cut(s)	97, 1698
BspDI	ATCGAT	1 cut(s)	2037
BspEI	TCCGGA	1 cut(s)	1171
BspHI	TCATGA	1 cut(s)	1402
BspLI	GGNNCC	5 cut(s)	298, 477, 1203, 1575, 1942
BspMAI	CTGCAG	2 cut(s)	550, 1606
BspPI	GGATC	6 cut(s)	814, 1707, 1751, 1817, 1940, 1964
BspT107I	GGYRCC	2 cut(s)	475, 1201
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	3 cut(s)	903, 1377, 2001
BsrFI	RCCGGY	2 cut(s)	94, 2027
BsrI	ACTGG	3 cut(s)	618, 880, 1777
BssAI	RCCGGY	2 cut(s)	94, 2027
BssECI	CCNNGG	7 cut(s)	201, 255, 823, 824, 973, 1237, 1248
BssNI	GRCGYC	1 cut(s)	1202
BssT1I	CCWWGG	3 cut(s)	201, 1237, 1248
Bst2UI	CCWGG	3 cut(s)	770, 825, 975
Bst4CI	ACNGT	6 cut(s)	279, 666, 1025, 1096, 1409, 1622
BstACI	GRCGYC	1 cut(s)	1202
BstAPI	GCANNNNNTGC	2 cut(s)	266, 675
BstBAI	YACGTR	2 cut(s)	459, 2048
BstC8I	GCNNGC	2 cut(s)	96, 398
BstDEI	CTNAG	4 cut(s)	84, 740, 1706, 1877
BstENI	CCTNNNNNAGG	1 cut(s)	972
BstF5I	GGATG	6 cut(s)	185, 251, 482, 617, 1216, 1332
BstH2I	RGCGCY	1 cut(s)	1205
BstHHI	GCGC	2 cut(s)	405, 1204
BstMAI	GTCTC	1 cut(s)	992
BstMCI	CGRYCG	2 cut(s)	150, 783
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 318, 402, 675, 1580
BstNI	CCWGG	3 cut(s)	770, 825, 975
BstNSI	RCATGY	2 cut(s)	400, 943
BstSCI	CCNGG	4 cut(s)	702, 768, 823, 973
BstSFI	CTRYAG	4 cut(s)	546, 598, 1602, 1618
BstSLI	GKGCMC	1 cut(s)	644
BstSNI	TACGTA	1 cut(s)	2048
BstV1I	GCAGC	5 cut(s)	103, 387, 454, 532, 560
BstV2I	GAAGAC	1 cut(s)	1851
BstX2I	RGATCY	4 cut(s)	806, 1699, 1756, 1976
BstYI	RGATCY	4 cut(s)	806, 1699, 1756, 1976
Bsu15I	ATCGAT	1 cut(s)	2037
BsuI	GTATCC	1 cut(s)	1179
BsuRI	GGCC	3 cut(s)	374, 961, 1849
BsuTUI	ATCGAT	1 cut(s)	2037
BtgZI	GCGATG	1 cut(s)	1440
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	6 cut(s)	185, 251, 482, 617, 1216, 1332
BtsI	GCAGTG	2 cut(s)	644, 1140
BtsIMutI	CAGTG	4 cut(s)	644, 671, 1092, 1140
Cac8I	GCNNGC	2 cut(s)	96, 398
CaiI	CAGNNNCTG	1 cut(s)	1610
CciI	TCATGA	1 cut(s)	1402
CfoI	GCGC	2 cut(s)	405, 1204
Cfr10I	RCCGGY	2 cut(s)	94, 2027
ClaI	ATCGAT	1 cut(s)	2037
CsiI	ACCWGGT	1 cut(s)	768
Csp6I	GTAC	4 cut(s)	57, 385, 476, 1360
CspAI	ACCGGT	1 cut(s)	2027
CviQI	GTAC	4 cut(s)	57, 385, 476, 1360
DdeI	CTNAG	4 cut(s)	84, 740, 1706, 1877
DinI	GGCGCC	1 cut(s)	1203
EciI	GGCGGA	2 cut(s)	255, 624
Ecl136II	GAGCTC	2 cut(s)	352, 1234
Eco105I	TACGTA	1 cut(s)	2048
Eco130I	CCWWGG	3 cut(s)	201, 1237, 1248
Eco24I	GRGCYC	2 cut(s)	354, 1236
Eco32I	GATATC	2 cut(s)	292, 1615
Eco53kI	GAGCTC	2 cut(s)	352, 1234
Eco57I	CTGAAG	2 cut(s)	584, 1080
Eco88I	CYCGRG	1 cut(s)	797
EcoICRI	GAGCTC	2 cut(s)	352, 1234
EcoNI	CCTNNNNNAGG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	1536
EcoRII	CCWGG	3 cut(s)	768, 823, 973
EcoRV	GATATC	2 cut(s)	292, 1615
EcoT14I	CCWWGG	3 cut(s)	201, 1237, 1248
EcoT22I	ATGCAT	2 cut(s)	331, 1805
EcoT38I	GRGCYC	2 cut(s)	354, 1236
EgeI	GGCGCC	1 cut(s)	1203
EheI	GGCGCC	1 cut(s)	1203
ErhI	CCWWGG	3 cut(s)	201, 1237, 1248
FaqI	GGGAC	4 cut(s)	342, 1401, 1750, 1880
FbaI	TGATCA	3 cut(s)	42, 64, 1510
FblI	GTMKAC	1 cut(s)	1278
Fnu4HI	GCNGC	6 cut(s)	89, 92, 401, 443, 546, 549
FokI	GGATG	6 cut(s)	172, 238, 469, 604, 1203, 1339
FriOI	GRGCYC	2 cut(s)	354, 1236
Fsp4HI	GCNGC	6 cut(s)	89, 92, 401, 443, 546, 549
FspBI	CTAG	6 cut(s)	333, 1226, 1238, 1437, 1836, 1980
GlaI	GCGC	2 cut(s)	404, 1203
GluI	GCNGC	6 cut(s)	89, 92, 401, 443, 546, 549
GsaI	CCCAGC	1 cut(s)	750
GsuI	CTGGAG	1 cut(s)	1560
HaeII	RGCGCY	1 cut(s)	1205
HaeIII	GGCC	3 cut(s)	374, 961, 1849
HapII	CCGG	5 cut(s)	95, 704, 1172, 1324, 2028
HhaI	GCGC	2 cut(s)	405, 1204
Hin1I	GRCGYC	1 cut(s)	1202
Hin6I	GCGC	2 cut(s)	403, 1202
HinP1I	GCGC	2 cut(s)	403, 1202
HincII	GTYRAC	3 cut(s)	775, 1432, 1531
HindII	GTYRAC	3 cut(s)	775, 1432, 1531
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	9 cut(s)	152, 557, 800, 1007, 1389, 1465, 1497, 1549, 1607
HpaI	GTTAAC	1 cut(s)	1531
HpaII	CCGG	5 cut(s)	95, 704, 1172, 1324, 2028
HphI	GGTGA	4 cut(s)	505, 566, 758, 1388
Hpy166II	GTNNAC	8 cut(s)	642, 775, 1099, 1279, 1432, 1531, 1655, 1770
Hpy8I	GTNNAC	8 cut(s)	642, 775, 1099, 1279, 1432, 1531, 1655, 1770
Hpy99I	CGWCG	1 cut(s)	1765
HpyCH4III	ACNGT	6 cut(s)	279, 666, 1025, 1096, 1409, 1622
HpyCH4IV	ACGT	5 cut(s)	13, 458, 1527, 1763, 2047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 318, 402, 675, 1580
HpyF3I	CTNAG	4 cut(s)	84, 740, 1706, 1877
HpySE526I	ACGT	5 cut(s)	13, 458, 1527, 1763, 2047
Hsp92I	GRCGYC	1 cut(s)	1202
HspAI	GCGC	2 cut(s)	403, 1202
KasI	GGCGCC	1 cut(s)	1201
Kpn2I	TCCGGA	1 cut(s)	1171
KpnI	GGTACC	1 cut(s)	479
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	3 cut(s)	42, 64, 1510
KspAI	GTTAAC	1 cut(s)	1531
LmnI	GCTCC	6 cut(s)	349, 422, 462, 838, 1239, 1579
Lsp1109I	GCAGC	5 cut(s)	103, 387, 454, 532, 560
MabI	ACCWGGT	1 cut(s)	768
MaeI	CTAG	6 cut(s)	333, 1226, 1238, 1437, 1836, 1980
MaeII	ACGT	5 cut(s)	13, 458, 1527, 1763, 2047
MaeIII	GTNAC	7 cut(s)	36, 134, 602, 660, 752, 1409, 1439
MbiI	CCGCTC	1 cut(s)	417
MboII	GAAGA	6 cut(s)	707, 1265, 1694, 1851, 1878, 2020
MfeI	CAATTG	1 cut(s)	1584
MflI	RGATCY	4 cut(s)	806, 1699, 1756, 1976
MhlI	GDGCHC	5 cut(s)	343, 354, 467, 644, 1236
Mly113I	GGCGCC	1 cut(s)	1202
MlyI	GAGTC	3 cut(s)	146, 809, 1383
MmeI	TCCRAC	4 cut(s)	892, 1140, 1570, 1784
Mph1103I	ATGCAT	2 cut(s)	331, 1805
MroI	TCCGGA	1 cut(s)	1171
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	1269
MseI	TTAA	6 cut(s)	171, 623, 680, 1179, 1530, 1790
MslI	CAYNNNNRTG	6 cut(s)	938, 1133, 1370, 1401, 1425, 1568
MspA1I	CMGCKG	3 cut(s)	551, 750, 1892
MspI	CCGG	5 cut(s)	95, 704, 1172, 1324, 2028
MspR9I	CCNGG	4 cut(s)	704, 770, 825, 975
MunI	CAATTG	1 cut(s)	1584
Mva1269I	GAATGC	1 cut(s)	984
MvaI	CCWGG	3 cut(s)	770, 825, 975
MwoI	GCNNNNNNNGC	5 cut(s)	266, 318, 402, 675, 1580
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	1202
NciI	CCSGG	1 cut(s)	704
NgoMIV	GCCGGC	1 cut(s)	94
NlaIV	GGNNCC	5 cut(s)	298, 477, 1203, 1575, 1942
NmuCI	GTSAC	1 cut(s)	1409
NsiI	ATGCAT	2 cut(s)	331, 1805
NspI	RCATGY	2 cut(s)	400, 943
PaeI	GCATGC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	1402
PasI	CCCWGGG	1 cut(s)	824
PciI	ACATGT	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	984
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	1269
PfeI	GAWTC	6 cut(s)	557, 1007, 1465, 1497, 1549, 1607
PflMI	CCANNNNNTGG	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	702
PinAI	ACCGGT	1 cut(s)	2027
PkrI	GCNGC	6 cut(s)	90, 93, 402, 444, 547, 550
PleI	GAGTC	3 cut(s)	146, 808, 1383
PluTI	GGCGCC	1 cut(s)	1205
PpsI	GAGTC	3 cut(s)	146, 808, 1383
Ppu21I	YACGTR	2 cut(s)	459, 2048
PscI	ACATGT	1 cut(s)	939
PshBI	ATTAAT	1 cut(s)	1790
Psp124BI	GAGCTC	2 cut(s)	354, 1236
Psp1406I	AACGTT	1 cut(s)	1527
Psp6I	CCWGG	3 cut(s)	768, 823, 973
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	3 cut(s)	768, 823, 973
PspN4I	GGNNCC	5 cut(s)	298, 477, 1203, 1575, 1942
PstI	CTGCAG	2 cut(s)	550, 1606
PstNI	CAGNNNCTG	1 cut(s)	1610
PsuI	RGATCY	4 cut(s)	806, 1699, 1756, 1976
PvuII	CAGCTG	2 cut(s)	551, 750
RsaI	GTAC	4 cut(s)	58, 386, 477, 1361
RsaNI	GTAC	4 cut(s)	57, 385, 476, 1360
RseI	CAYNNNNRTG	6 cut(s)	938, 1133, 1370, 1401, 1425, 1568
SacI	GAGCTC	2 cut(s)	354, 1236
SaqAI	TTAA	6 cut(s)	171, 623, 680, 1179, 1530, 1790
SatI	GCNGC	6 cut(s)	89, 92, 401, 443, 546, 549
SchI	GAGTC	3 cut(s)	146, 809, 1383
ScrFI	CCNGG	4 cut(s)	704, 770, 825, 975
SduI	GDGCHC	5 cut(s)	343, 354, 467, 644, 1236
SexAI	ACCWGGT	1 cut(s)	768
SfcI	CTRYAG	4 cut(s)	546, 598, 1602, 1618
SfoI	GGCGCC	1 cut(s)	1203
SmiMI	CAYNNNNRTG	6 cut(s)	938, 1133, 1370, 1401, 1425, 1568
SnaBI	TACGTA	1 cut(s)	2048
SphI	GCATGC	1 cut(s)	400
SsiI	CCGC	8 cut(s)	89, 240, 415, 609, 1357, 1505, 1890, 2014
SspDI	GGCGCC	1 cut(s)	1201
SspMI	CTAG	6 cut(s)	333, 1226, 1238, 1437, 1836, 1980
SstI	GAGCTC	2 cut(s)	354, 1236
StyD4I	CCNGG	4 cut(s)	702, 768, 823, 973
StyI	CCWWGG	3 cut(s)	201, 1237, 1248
TaaI	ACNGT	6 cut(s)	279, 666, 1025, 1096, 1409, 1622
TaiI	ACGT	5 cut(s)	16, 461, 1530, 1766, 2050
TaqI	TCGA	6 cut(s)	492, 525, 846, 1020, 1036, 2037
TaqII	GACCGA	2 cut(s)	164, 797
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	6 cut(s)	557, 1007, 1465, 1497, 1549, 1607
Tru1I	TTAA	6 cut(s)	171, 623, 680, 1179, 1530, 1790
Tru9I	TTAA	6 cut(s)	171, 623, 680, 1179, 1530, 1790
TscAI	CASTG	4 cut(s)	644, 671, 1099, 1140
TseFI	GTSAC	1 cut(s)	1409
TseI	GCWGC	5 cut(s)	91, 400, 442, 545, 548
Tsp45I	GTSAC	1 cut(s)	1409
TspDTI	ATGAA	7 cut(s)	1098, 1391, 1409, 1478, 1529, 1587, 1990
TspGWI	ACGGA	2 cut(s)	916, 1548
TspRI	CASTG	4 cut(s)	644, 671, 1099, 1140
Van91I	CCANNNNNTGG	1 cut(s)	381
VneI	GTGCAC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	1790
XagI	CCTNNNNNAGG	1 cut(s)	972
XapI	RAATTY	5 cut(s)	488, 1258, 1473, 1536, 1910
XbaI	TCTAGA	2 cut(s)	332, 1979
XceI	RCATGY	2 cut(s)	400, 943
XmaJI	CCTAGG	1 cut(s)	1237
XmiI	GTMKAC	1 cut(s)	1278
XmnI	GAANNNNTTC	1 cut(s)	1269
XspI	CTAG	6 cut(s)	333, 1226, 1238, 1437, 1836, 1980
Zsp2I	ATGCAT	2 cut(s)	331, 1805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.