Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Reverse (-)

63059248 .. 63059879

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTCCAGAGGCAATTGTTGGACATTCATCTGCAGAAGCTGATGTCTACAGTTTTGGTGCGTTAGTCGTGGAGATAGTAAGTGGACAAGAAATTAGTAGTTTGGCTTCCGAAAAGCTAAATGAGGAGGATCTTCTGAGATTTGCATGGAAGAATTGGGCAGAAGGGACAATTAGAAATCTAATAGATCCGACGTTGTGGACTGGTTCAGGAATTGAATTAATGGAGAGATGCATCAGGATCGGATTATTGTGTATGCAGAGGACTAGAACCGATAGGCCAACCATGTCTTCTGTTATTCAGATGCTTAGTCATTCTTCCGCTATCCCTCTACCTAATAAATTTAGGCATGGTAGCTTTGGGATCATTGGAACCTTGAACAATGTGGAAGGTGTTTCTGATCCAAGGTCTAGAGCAAAAGTTCAACCCTTCATTGCGAAGATGCGGTGTTCCACTACGGGTATCATCAATAAGATACGTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

162

Amino Acids

17.93

Weight (kDa)

9.21

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	321, 445
AclWI	GGATC	5 cut(s)	138, 182, 248, 371, 395
AcsI	RAATTY	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	218, 379, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	3 cut(s)	41, 118, 357
AluI	AGCT	3 cut(s)	41, 118, 357
AlwI	GGATC	5 cut(s)	138, 182, 248, 371, 395
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	341
AseI	ATTAAT	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
BbsI	GAAGAC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BfaI	CTAG	2 cut(s)	267, 411
BfmI	CTRYAG	2 cut(s)	33, 49
BmiI	GGNNCC	2 cut(s)	6, 373
BmsI	GCATC	4 cut(s)	221, 243, 294, 432
BpiI	GAAGAC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	130, 187, 240, 363, 400
BspACI	CCGC	2 cut(s)	321, 445
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	6, 373
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	5 cut(s)	138, 182, 248, 371, 395
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	5 cut(s)	130, 187, 240, 363, 400
BssT1I	CCWWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	137, 308
BstKTI	GATC	5 cut(s)	133, 190, 243, 366, 403
BstMBI	GATC	5 cut(s)	130, 187, 240, 363, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	2 cut(s)	33, 49
BstSNI	TACGTA	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	130, 187
BstYI	RGATCY	2 cut(s)	130, 187
BsuRI	GGCC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	41
CviAII	CATG	3 cut(s)	147, 286, 350
CviJI	RGCY	6 cut(s)	5, 41, 107, 118, 280, 357
CviKI_1	RGCY	6 cut(s)	5, 41, 107, 118, 280, 357
DdeI	CTNAG	2 cut(s)	137, 308
DpnI	GATC	5 cut(s)	132, 189, 242, 365, 402
DpnII	GATC	5 cut(s)	130, 187, 240, 363, 400
Eco105I	TACGTA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	150, 289, 353
FaiI	YATR	4 cut(s)	148, 257, 287, 351
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	146, 285, 349
FblI	GTMKAC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	267, 411
HaeIII	GGCC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	150, 289, 353
Hpy166II	GTNNAC	3 cut(s)	49, 86, 201
Hpy188I	TCNGA	6 cut(s)	112, 138, 192, 245, 303, 400
Hpy188III	TCNNGA	4 cut(s)	8, 210, 238, 411
Hpy8I	GTNNAC	3 cut(s)	49, 86, 201
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	158, 383, 439
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	194, 478
HpyCH4V	TGCA	4 cut(s)	35, 146, 234, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	137, 308
HpySE526I	ACGT	2 cut(s)	194, 478
Hsp92II	CATG	3 cut(s)	150, 289, 353
Kzo9I	GATC	5 cut(s)	130, 187, 240, 363, 400
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	21, 189, 195, 223
LweI	GCATC	4 cut(s)	221, 243, 294, 432
MaeI	CTAG	2 cut(s)	267, 411
MaeII	ACGT	2 cut(s)	194, 478
MalI	GATC	5 cut(s)	132, 189, 242, 365, 402
MboI	GATC	5 cut(s)	130, 187, 240, 363, 400
MboII	GAAGA	5 cut(s)	125, 163, 282, 309, 451
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	2 cut(s)	130, 187
MluCI	AATT	7 cut(s)	15, 93, 154, 171, 213, 218, 341
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	4, 118, 121, 255, 339
Mph1103I	ATGCAT	1 cut(s)	236
MseI	TTAA	1 cut(s)	221
MunI	CAATTG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	130, 187, 240, 363, 400
NlaIII	CATG	3 cut(s)	150, 289, 353
NlaIV	GGNNCC	2 cut(s)	6, 373
NsiI	ATGCAT	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	6, 373
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	130, 187
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	5 cut(s)	130, 187, 240, 363, 400
SetI	ASST	9 cut(s)	43, 120, 197, 337, 359, 377, 394, 410, 481
SfaNI	GCATC	4 cut(s)	221, 243, 294, 432
SfcI	CTRYAG	2 cut(s)	33, 49
SnaBI	TACGTA	1 cut(s)	479
Sse9I	AATT	7 cut(s)	15, 93, 154, 171, 213, 218, 341
SsiI	CCGC	2 cut(s)	321, 445
SspMI	CTAG	2 cut(s)	267, 411
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	197, 481
TasI	AATT	7 cut(s)	15, 93, 154, 171, 213, 218, 341
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	18, 421
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	267, 411
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.