Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Reverse (-)

63060636 .. 63084207

Gene Structure 23572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTTGTTTCTCTTGTACTAATGATCTCCATAGGCATTTACGCGAAAGTAGTGAAAACAAGGCGGCAACCTATCTTAGGGATGAATCATAATTTTCTTGAGAAAATGGATGAGCATATGGCCATGGAATCCTTGCTATTCGACTGTGGCGCCATTCGAGTTGCCACAAATAACTTTTCTGAAGCAAATAAACTTGGAGATGATGGATATGGCACTGTTTACAGGGCATGGAAGAATTGGGCAAAAGGGACAGTTAGAAATGTAATAGATCCGACGTTGTGGACTGGTTCAGGGATTGAATTAATGGAGAGATGCATCAGAATCGGATTATTCTGTATGCAGAGGACTAGAACCGATAGGCCAACCATGTCTTCTGTTATTCAGATGCTTAGTTATTCTTCCGCTATCCCTCTACCTTATAAATCTAGTCATGGTAGCTTTGGAATCATTGGAACCATGGAAAATGTGGAAGATTACACATTTGAAAAAGCTTTTGACAGAAACCTGGTTTCTGTCAAAAATGGACGCAGCAGTAGCACAGCACACGACCGTAGTGGTTGCTTTTGTGCTAAAGAAAATGGACAAGAAAAGAGGTTTGCTCAAATGGAGGAGTCGGTTTATGGTATCTACCTGGGCACAATGCTGAAGATCAGAGTTCTTGTGGATGTTGAGAAGCCCCTTCGCAGGATTGCCTCCATCAGACCCAGCTGTAACTTCAACTATCAGCTGGACCAGGTTGACCCGACCAATACCACAATTCCCGAGTCAGGATCTCCAAGTGAAAGCCCTGGGATAGCTCCACCGGCGCCTCCTTATAGCCCTGGGATAGCTCCACCGACGCCACGTCATGATAGCCCTGAGAGAAGCCGTGGGAGGTCTAGCACTGGTAGCATAGTCCGTATCGTTATACTATTTGCAATGGTTGTTTCTGTTGGACTAATGATCTCCGTAGGCATTTACATGAAAGTAGAGAAGAGAAGGCCACAACCTATCTCAGGGATGCAACCTAATATTTTTGAGACAATGGAATCCTTGCAATTCGACTGTGGCGACATTCGAGTTGCCACAAATAACTTTTCTGAAGCAAATAAACTTGGAGATGATGAATATGGCACTGTTTACACGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

376

Amino Acids

41.8

Weight (kDa)

8.39

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccB1I	GGYRCC	2 cut(s)	149, 805
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	64, 402
AclWI	GGATC	2 cut(s)	263, 778
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	3 cut(s)	201, 665, 1101
AcyI	GRCGYC	3 cut(s)	150, 806, 839
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	77, 684, 767, 995
AgsI	TTSAA	3 cut(s)	299, 485, 718
AhdI	GACNNNNNGTC	1 cut(s)	843
AjiI	CACGTC	1 cut(s)	845
AjnI	CCWGG	5 cut(s)	504, 630, 732, 787, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	6 cut(s)	438, 491, 708, 727, 797, 830
AluI	AGCT	6 cut(s)	438, 491, 708, 727, 797, 830
Alw26I	GTCTC	1 cut(s)	1013
AlwI	GGATC	2 cut(s)	263, 778
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	120, 359, 980
ApeKI	GCWGC	1 cut(s)	528
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	152, 808
AspS9I	GGNCC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	149, 805
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	197, 704
BceAI	ACGGC	1 cut(s)	852
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	5 cut(s)	506, 632, 734, 789, 822
BcoDI	GTCTC	1 cut(s)	1013
BfaI	CTAG	3 cut(s)	348, 426, 879
BfoI	RGCGCY	2 cut(s)	153, 809
BisI	GCNGC	2 cut(s)	65, 529
BlsI	GCNGC	2 cut(s)	66, 530
Bme1390I	CCNGG	5 cut(s)	506, 632, 734, 789, 822
Bme18I	GGWCC	1 cut(s)	730
BmeRI	GACNNNNNGTC	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	845
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	3 cut(s)	151, 454, 807
BmrFI	CCNGG	5 cut(s)	506, 632, 734, 789, 822
BmsI	GCATC	4 cut(s)	302, 324, 375, 990
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	3 cut(s)	150, 806, 839
BsaJI	CCNNGG	8 cut(s)	123, 456, 631, 787, 788, 820, 821, 868
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 684, 767, 995
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	2 cut(s)	289, 889
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	5 cut(s)	506, 632, 734, 789, 822
BseDI	CCNNGG	8 cut(s)	123, 456, 631, 787, 788, 820, 821, 868
BseGI	GGATG	4 cut(s)	87, 115, 670, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	77, 684, 767, 995
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	2 cut(s)	849, 1008
BseNI	ACTGG	2 cut(s)	289, 889
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	550
BshFI	GGCC	3 cut(s)	122, 361, 982
BshNI	GGYRCC	2 cut(s)	149, 805
BsiEI	CGRYCG	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	4 cut(s)	77, 684, 767, 995
BsmAI	GTCTC	1 cut(s)	1013
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	122, 361, 982
BsoBI	CYCGRG	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	5 cut(s)	24, 268, 648, 770, 942
Bsp19I	CCATGG	2 cut(s)	123, 456
BspACI	CCGC	2 cut(s)	64, 402
BspANI	GGCC	3 cut(s)	122, 361, 982
BspCNI	CTCAG	2 cut(s)	850, 1007
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	3 cut(s)	151, 454, 807
BspPI	GGATC	2 cut(s)	263, 778
BspT107I	GGYRCC	2 cut(s)	149, 805
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	2 cut(s)	289, 889
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	8 cut(s)	123, 456, 631, 787, 788, 820, 821, 868
BssMI	GATC	5 cut(s)	24, 268, 648, 770, 942
BssNI	GRCGYC	3 cut(s)	150, 806, 839
BssT1I	CCWWGG	2 cut(s)	123, 456
Bst2UI	CCWGG	5 cut(s)	506, 632, 734, 789, 822
Bst4CI	ACNGT	7 cut(s)	146, 217, 253, 551, 1046, 1117, 1126
Bst6I	CTCTTC	1 cut(s)	968
BstACI	GRCGYC	3 cut(s)	150, 806, 839
BstDEI	CTNAG	4 cut(s)	76, 389, 858, 994
BstDSI	CCRYGG	3 cut(s)	123, 456, 868
BstENI	CCTNNNNNAGG	2 cut(s)	75, 993
BstF5I	GGATG	4 cut(s)	87, 115, 670, 1005
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	2 cut(s)	153, 809
BstHHI	GCGC	2 cut(s)	152, 808
BstKTI	GATC	5 cut(s)	27, 271, 651, 773, 945
BstMAI	GTCTC	1 cut(s)	1013
BstMBI	GATC	5 cut(s)	24, 268, 648, 770, 942
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	3 cut(s)	534, 803, 888
BstNI	CCWGG	5 cut(s)	506, 632, 734, 789, 822
BstSCI	CCNGG	5 cut(s)	504, 630, 732, 787, 820
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	540
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	2 cut(s)	268, 770
BstYI	RGATCY	2 cut(s)	268, 770
BsuRI	GGCC	3 cut(s)	122, 361, 982
BtgI	CCRYGG	3 cut(s)	123, 456, 868
BtrI	CACGTC	1 cut(s)	845
BtsCI	GGATG	4 cut(s)	87, 115, 670, 1005
BtsIMutI	CAGTG	3 cut(s)	213, 882, 1113
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	2 cut(s)	152, 808
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	1 cut(s)	730
CseI	GACGC	2 cut(s)	534, 847
CsiI	ACCWGGT	2 cut(s)	504, 732
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	7 cut(s)	124, 228, 367, 431, 457, 848, 961
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	4 cut(s)	76, 389, 858, 994
DinI	GGCGCC	2 cut(s)	151, 807
DpnI	GATC	5 cut(s)	26, 270, 650, 772, 944
DpnII	GATC	5 cut(s)	24, 268, 648, 770, 942
DriI	GACNNNNNGTC	1 cut(s)	843
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	968
Eam1105I	GACNNNNNGTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	123, 456
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	3 cut(s)	201, 665, 1101
Eco88I	CYCGRG	1 cut(s)	761
EcoNI	CCTNNNNNAGG	2 cut(s)	75, 993
EcoRII	CCWGG	5 cut(s)	504, 630, 732, 787, 820
EcoT14I	CCWWGG	2 cut(s)	123, 456
EcoT22I	ATGCAT	1 cut(s)	317
EgeI	GGCGCC	2 cut(s)	151, 807
EheI	GGCGCC	2 cut(s)	151, 807
ErhI	CCWWGG	2 cut(s)	123, 456
FaeI	CATG	7 cut(s)	127, 231, 370, 434, 460, 851, 964
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	7 cut(s)	123, 227, 366, 430, 456, 847, 960
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	65, 529
FokI	GGATG	4 cut(s)	94, 122, 677, 1012
Fsp4HI	GCNGC	2 cut(s)	65, 529
FspBI	CTAG	3 cut(s)	348, 426, 879
GlaI	GCGC	2 cut(s)	151, 807
GluI	GCNGC	2 cut(s)	65, 529
GsaI	CCCAGC	1 cut(s)	708
HaeII	RGCGCY	2 cut(s)	153, 809
HaeIII	GGCC	3 cut(s)	122, 361, 982
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	2 cut(s)	534, 847
HhaI	GCGC	2 cut(s)	152, 808
Hin1I	GRCGYC	3 cut(s)	150, 806, 839
Hin1II	CATG	7 cut(s)	127, 231, 370, 434, 460, 851, 964
Hin6I	GCGC	2 cut(s)	150, 806
HinP1I	GCGC	2 cut(s)	150, 806
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	7 cut(s)	85, 128, 321, 444, 611, 764, 1028
HpaII	CCGG	1 cut(s)	803
Hpy166II	GTNNAC	4 cut(s)	220, 282, 739, 1120
Hpy188I	TCNGA	8 cut(s)	181, 273, 320, 326, 384, 653, 701, 1081
Hpy188III	TCNNGA	4 cut(s)	98, 761, 768, 848
Hpy8I	GTNNAC	4 cut(s)	220, 282, 739, 1120
Hpy99I	CGWCG	2 cut(s)	277, 841
HpyAV	CCTTC	2 cut(s)	689, 972
HpyCH4III	ACNGT	7 cut(s)	146, 217, 253, 551, 1046, 1117, 1126
HpyCH4IV	ACGT	2 cut(s)	275, 844
HpyCH4V	TGCA	5 cut(s)	315, 340, 917, 1003, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	534, 803, 888
HpyF3I	CTNAG	4 cut(s)	76, 389, 858, 994
HpySE526I	ACGT	2 cut(s)	275, 844
Hsp92I	GRCGYC	3 cut(s)	150, 806, 839
Hsp92II	CATG	7 cut(s)	127, 231, 370, 434, 460, 851, 964
HspAI	GCGC	2 cut(s)	150, 806
KasI	GGCGCC	2 cut(s)	149, 805
Kzo9I	GATC	5 cut(s)	24, 268, 648, 770, 942
LmnI	GCTCC	2 cut(s)	802, 835
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	4 cut(s)	302, 324, 375, 990
MabI	ACCWGGT	2 cut(s)	504, 732
MaeI	CTAG	3 cut(s)	348, 426, 879
MaeII	ACGT	2 cut(s)	275, 844
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	5 cut(s)	26, 270, 650, 772, 944
MboI	GATC	5 cut(s)	24, 268, 648, 770, 942
MboII	GAAGA	6 cut(s)	244, 363, 390, 482, 658, 985
MflI	RGATCY	2 cut(s)	268, 770
MhlI	GDGCHC	1 cut(s)	638
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	91, 235, 299, 756, 1037
MluNI	TGGCCA	1 cut(s)	122
Mly113I	GGCGCC	2 cut(s)	150, 806
MlyI	GAGTC	2 cut(s)	620, 773
MmeI	TCCRAC	2 cut(s)	296, 913
MnlI	CCTC	7 cut(s)	336, 420, 585, 601, 703, 819, 867
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	959
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	708, 727
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	5 cut(s)	506, 632, 734, 789, 822
MvaI	CCWGG	5 cut(s)	506, 632, 734, 789, 822
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	534, 803, 888
NarI	GGCGCC	2 cut(s)	150, 806
NcoI	CCATGG	2 cut(s)	123, 456
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	5 cut(s)	24, 268, 648, 770, 942
NlaIII	CATG	7 cut(s)	127, 231, 370, 434, 460, 851, 964
NlaIV	GGNNCC	3 cut(s)	151, 454, 807
NsiI	ATGCAT	1 cut(s)	317
PagI	TCATGA	1 cut(s)	847
PasI	CCCWGGG	2 cut(s)	788, 821
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PfeI	GAWTC	5 cut(s)	85, 128, 321, 444, 1028
PkrI	GCNGC	2 cut(s)	66, 530
PleI	GAGTC	2 cut(s)	619, 772
PluTI	GGCGCC	2 cut(s)	153, 809
PpsI	GAGTC	2 cut(s)	619, 772
PshBI	ATTAAT	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	5 cut(s)	504, 630, 732, 787, 820
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	5 cut(s)	504, 630, 732, 787, 820
PspN4I	GGNNCC	3 cut(s)	151, 454, 807
PspPI	GGNCC	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	268, 770
PvuII	CAGCTG	2 cut(s)	708, 727
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	959
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	65, 529
Sau3AI	GATC	5 cut(s)	24, 268, 648, 770, 942
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	2 cut(s)	620, 773
ScrFI	CCNGG	5 cut(s)	506, 632, 734, 789, 822
SduI	GDGCHC	1 cut(s)	638
SexAI	ACCWGGT	2 cut(s)	504, 732
SfaNI	GCATC	4 cut(s)	302, 324, 375, 990
SfoI	GGCGCC	2 cut(s)	151, 807
SgrAI	CRCCGGYG	1 cut(s)	802
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	5 cut(s)	91, 235, 299, 756, 1037
SsiI	CCGC	2 cut(s)	64, 402
SspDI	GGCGCC	2 cut(s)	149, 805
SspI	AATATT	1 cut(s)	1012
SspMI	CTAG	3 cut(s)	348, 426, 879
StyD4I	CCNGG	5 cut(s)	504, 630, 732, 787, 820
StyI	CCWWGG	2 cut(s)	123, 456
TaaI	ACNGT	7 cut(s)	146, 217, 253, 551, 1046, 1117, 1126
TaiI	ACGT	2 cut(s)	278, 847
TaqI	TCGA	4 cut(s)	141, 157, 1041, 1057
TasI	AATT	5 cut(s)	91, 235, 299, 756, 1037
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	5 cut(s)	85, 128, 321, 444, 1028
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	3 cut(s)	220, 889, 1120
TseI	GCWGC	1 cut(s)	528
TspDTI	ATGAA	3 cut(s)	98, 977, 1119
TspGWI	ACGGA	2 cut(s)	887, 937
TspRI	CASTG	3 cut(s)	220, 889, 1120
VpaK11BI	GGWCC	1 cut(s)	730
VspI	ATTAAT	1 cut(s)	302
XagI	CCTNNNNNAGG	2 cut(s)	75, 993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	3 cut(s)	348, 426, 879
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.