Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Reverse (-)

59746727 .. 59749430

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTTCCCTCACGTCTATTATTCCTTTCTCCCATTTTGTTACTGATCATAATCACTAGTACCACCGATCAAGCGGCCGCCCTTGCTCAGCCGCAGCCAGCTGCTGATCATCTGCTAAGCCACTTCTGTTCAAACCACAAAGGTAACTACACCACGACGGGTGCCTATCGCACAAACCTTAACCACCTTCTCTCATCCCTTCCCTTCAAGGGTAGCGGCCACGGCTTTTATAGTTCTTCATATGGCCGAAACACTACATCCGGCACAATATATGCAATCGGACTATGTAAAGGAGACATTGGAACCACGCGCCACTGCCTTCATTGCCTCAATACCTCTAGAAGTGCTCTCATGGAGCTTTGTGCCAATCAGAAGGAAGCTATTGTTTGGTACGACAACTGCATGCTGCGCTACTCAAACCGCTCCCTACATGGCGTCATGGACACGCTGCCTGCTTTCAATTTGTGGAGCACTCAAAGCGTACCATCATCGGAGTTTGATGTATTTTTCCGGCAGCTCAGGTGGTTACTAGAAGCCCTAAGAAACAAAGCTGCCAAAGGGGGTTCTCTTAAGTTTGCAAAAAATAACGCAACCATTCTCAACTATCGTAACGGACTGTCTTCCTTAACGGCACTTGTGCACTGCACCCCTGATTTGTCCGAGTTACAGTGCAGCACTTGCTTACTTGGTGCTTTTGGAGAACTCCCAAAATGTTGTGATGGAAAGGAAGGTGGGCGAGTTCTTAGACCCAGCTGTAACTTCAACTATCAGCTGAACCAGGCATGGAAGAATTGGGCAAAAGGGACAGTTAGAAATGTAATAGATCCGACGTTGTGGACTGGTTCAGGGATTGAATTAATGGAGAGATGCATCAGAATCGGATTATTCTGTATGCAGAGGACTAGAACCGATAGGCCAACCATGTCTTCTGTTATTCAGATGCTTAGTTATTCTTCCGCTATCCCTCTACCTTATAAATCTAGTCATGGTAGCTTTGGAATCATTGGAACCATGGAAAATGTGGAAGGTTTTTCTGATCCAAGGTCTAGGGCAAAGGTTCAATCCTTCATTGCAAAGATGCGGTGTGCCACTACTGCCATCATCAATAGGATACGTAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

374

Amino Acids

41.41

Weight (kDa)

9.45

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	43 - 141	7.2e-22	Salt stress response/antifungal
Stress-antifung	PF01657	167 - 257	1.5e-07	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	975
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	423
AccII	CGCG	1 cut(s)	310
AciI	CCGC	7 cut(s)	74, 78, 92, 216, 421, 957, 1081
AclWI	GGATC	2 cut(s)	818, 1031
AcoI	YGGCCR	3 cut(s)	75, 217, 244
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	3 cut(s)	61, 392, 483
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	6 cut(s)	132, 208, 460, 763, 854, 1061
AhlI	ACTAGT	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	777
AjuI	GAANNNNNNNTTGG	2 cut(s)	910, 942
AluBI	AGCT	8 cut(s)	101, 358, 380, 517, 551, 753, 772, 993
AluI	AGCT	8 cut(s)	101, 358, 380, 517, 551, 753, 772, 993
Alw21I	GWGCWC	3 cut(s)	349, 473, 642
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	638
AlwI	GGATC	2 cut(s)	818, 1031
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	4 cut(s)	75, 217, 244, 914
ApaLI	GTGCAC	1 cut(s)	638
ApeKI	GCWGC	7 cut(s)	94, 101, 406, 448, 514, 551, 672
AseI	ATTAAT	1 cut(s)	857
AspLEI	GCGC	2 cut(s)	312, 411
BaeGI	GKGCMC	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	612, 918
Bbv12I	GWGCWC	3 cut(s)	349, 473, 642
BbvI	GCAGC	7 cut(s)	88, 106, 393, 435, 526, 538, 684
BccI	CCATC	3 cut(s)	493, 713, 1106
BceAI	ACGGC	2 cut(s)	238, 645
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BciT130I	CCWGG	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	1104
BclI	TGATCA	2 cut(s)	45, 106
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	6 cut(s)	57, 339, 530, 903, 981, 1047
BfrI	CTTAAG	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	1104
BlpI	GCTNAGC	2 cut(s)	87, 116
Bme1390I	CCNGG	1 cut(s)	779
BmgBI	CACGTC	1 cut(s)	14
BmiI	GGNNCC	4 cut(s)	6, 163, 304, 1009
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	4 cut(s)	857, 879, 930, 1068
BpiI	GAAGAC	2 cut(s)	612, 918
Bpu10I	CCTNAGC	1 cut(s)	518
Bpu1102I	GCTNAGC	2 cut(s)	87, 116
BsaAI	YACGTR	1 cut(s)	1115
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	220, 1011, 1040
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	844
Bse3DI	GCAATG	2 cut(s)	322, 1068
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	3 cut(s)	220, 1011, 1040
BseGI	GGATG	2 cut(s)	194, 257
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	2 cut(s)	322, 1068
BseMII	CTCAG	2 cut(s)	101, 532
BseNI	ACTGG	1 cut(s)	844
BseSI	GKGCMC	1 cut(s)	642
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	7 cut(s)	88, 106, 393, 435, 526, 538, 684
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	2 cut(s)	628, 691
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	77, 219, 246, 916
BshNI	GGYRCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	349, 473, 642
BsiSI	CCGG	2 cut(s)	261, 511
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	4 cut(s)	77, 219, 246, 916
Bsp1286I	GDGCHC	3 cut(s)	349, 473, 642
Bsp143I	GATC	5 cut(s)	45, 67, 106, 823, 1036
Bsp1720I	GCTNAGC	2 cut(s)	87, 116
Bsp19I	CCATGG	1 cut(s)	1011
BspACI	CCGC	7 cut(s)	74, 78, 92, 216, 421, 957, 1081
BspANI	GGCC	4 cut(s)	77, 219, 246, 916
BspCNI	CTCAG	2 cut(s)	100, 531
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	4 cut(s)	6, 163, 304, 1009
BspPI	GGATC	2 cut(s)	818, 1031
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	423
BsrDI	GCAATG	2 cut(s)	322, 1068
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	3 cut(s)	220, 1011, 1040
BssMI	GATC	5 cut(s)	45, 67, 106, 823, 1036
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	1011, 1040
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	618, 669, 808
BstACI	GRCGYC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	1115
BstC8I	GCNNGC	3 cut(s)	99, 404, 453
BstDEI	CTNAG	6 cut(s)	87, 116, 518, 539, 743, 944
BstDSI	CCRYGG	2 cut(s)	220, 1011
BstF5I	GGATG	2 cut(s)	194, 257
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	312, 411
BstKTI	GATC	5 cut(s)	48, 70, 109, 826, 1039
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	5 cut(s)	45, 67, 106, 823, 1036
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 222, 324, 408, 477, 678, 1094
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	642
BstSNI	TACGTA	1 cut(s)	1115
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	7 cut(s)	88, 106, 393, 435, 526, 538, 684
BstV2I	GAAGAC	2 cut(s)	612, 918
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BstZI	CGGCCG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	1104
BsuRI	GGCC	4 cut(s)	77, 219, 246, 916
BtgI	CCRYGG	2 cut(s)	220, 1011
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	194, 257
BtsI	GCAGTG	2 cut(s)	313, 640
BtsIMutI	CAGTG	3 cut(s)	313, 640, 674
Cac8I	GCNNGC	3 cut(s)	99, 404, 453
CaiI	CAGNNNCTG	1 cut(s)	104
CciNI	GCGGCCGC	1 cut(s)	75
CfoI	GCGC	2 cut(s)	312, 411
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	60, 391, 482
CviAII	CATG	8 cut(s)	352, 403, 431, 439, 783, 922, 986, 1012
CviQI	GTAC	3 cut(s)	60, 391, 482
DdeI	CTNAG	6 cut(s)	87, 116, 518, 539, 743, 944
DpnI	GATC	5 cut(s)	47, 69, 108, 825, 1038
DpnII	GATC	5 cut(s)	45, 67, 106, 823, 1036
EaeI	YGGCCR	3 cut(s)	75, 217, 244
EagI	CGGCCG	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	1115
Eco130I	CCWWGG	2 cut(s)	1011, 1040
Eco52I	CGGCCG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	1011, 1040
EcoT22I	ATGCAT	1 cut(s)	872
ErhI	CCWWGG	2 cut(s)	1011, 1040
FaeI	CATG	8 cut(s)	355, 406, 434, 442, 786, 925, 989, 1015
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	8 cut(s)	351, 402, 430, 438, 782, 921, 985, 1011
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	2 cut(s)	45, 106
FokI	GGATG	2 cut(s)	181, 244
FspBI	CTAG	6 cut(s)	57, 339, 530, 903, 981, 1047
GlaI	GCGC	2 cut(s)	311, 410
GsaI	CCCAGC	1 cut(s)	753
HaeIII	GGCC	4 cut(s)	77, 219, 246, 916
HapII	CCGG	2 cut(s)	261, 511
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	312, 411
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	8 cut(s)	355, 406, 434, 442, 786, 925, 989, 1015
Hin6I	GCGC	2 cut(s)	310, 409
HinP1I	GCGC	2 cut(s)	310, 409
HinfI	GANTC	2 cut(s)	876, 999
HpaII	CCGG	2 cut(s)	261, 511
Hpy166II	GTNNAC	2 cut(s)	640, 837
Hpy188I	TCNGA	9 cut(s)	281, 372, 493, 661, 828, 875, 881, 939, 1036
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	640, 837
Hpy99I	CGWCG	2 cut(s)	160, 832
HpyAV	CCTTC	8 cut(s)	197, 209, 214, 329, 367, 722, 1019, 1075
HpyCH4III	ACNGT	3 cut(s)	618, 669, 808
HpyCH4IV	ACGT	3 cut(s)	13, 830, 1114
HpyCH4V	TGCA	9 cut(s)	275, 402, 578, 640, 645, 672, 870, 895, 1073
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 222, 324, 408, 477, 678, 1094
HpyF3I	CTNAG	6 cut(s)	87, 116, 518, 539, 743, 944
HpySE526I	ACGT	3 cut(s)	13, 830, 1114
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	8 cut(s)	355, 406, 434, 442, 786, 925, 989, 1015
HspAI	GCGC	2 cut(s)	310, 409
Ksp22I	TGATCA	2 cut(s)	45, 106
Kzo9I	GATC	5 cut(s)	45, 67, 106, 823, 1036
LmnI	GCTCC	3 cut(s)	355, 428, 468
Lsp1109I	GCAGC	7 cut(s)	88, 106, 393, 435, 526, 538, 684
LweI	GCATC	4 cut(s)	857, 879, 930, 1068
MaeI	CTAG	6 cut(s)	57, 339, 530, 903, 981, 1047
MaeII	ACGT	3 cut(s)	13, 830, 1114
MaeIII	GTNAC	6 cut(s)	39, 143, 525, 608, 663, 755
MalI	GATC	5 cut(s)	47, 69, 108, 825, 1038
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	5 cut(s)	45, 67, 106, 823, 1036
MboII	GAAGA	5 cut(s)	228, 612, 799, 918, 945
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	349, 473, 642
MluCI	AATT	3 cut(s)	460, 790, 854
MmeI	TCCRAC	1 cut(s)	851
MnlI	CCTC	5 cut(s)	19, 338, 346, 891, 975
Mph1103I	ATGCAT	1 cut(s)	872
MseI	TTAA	4 cut(s)	180, 570, 626, 857
MspA1I	CMGCKG	3 cut(s)	101, 753, 772
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	2 cut(s)	261, 511
MspR9I	CCNGG	1 cut(s)	779
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	7 cut(s)	83, 222, 324, 408, 477, 678, 1094
NcoI	CCATGG	1 cut(s)	1011
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	5 cut(s)	45, 67, 106, 823, 1036
NlaIII	CATG	8 cut(s)	355, 406, 434, 442, 786, 925, 989, 1015
NlaIV	GGNNCC	4 cut(s)	6, 163, 304, 1009
NotI	GCGGCCGC	1 cut(s)	75
NsiI	ATGCAT	1 cut(s)	872
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	876, 999
Ppu21I	YACGTR	1 cut(s)	1115
PshBI	ATTAAT	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	4 cut(s)	6, 163, 304, 1009
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	3 cut(s)	101, 753, 772
RsaI	GTAC	3 cut(s)	61, 392, 483
RsaNI	GTAC	3 cut(s)	60, 391, 482
SaqAI	TTAA	4 cut(s)	180, 570, 626, 857
Sau3AI	GATC	5 cut(s)	45, 67, 106, 823, 1036
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	3 cut(s)	349, 473, 642
SfaNI	GCATC	4 cut(s)	857, 879, 930, 1068
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SnaBI	TACGTA	1 cut(s)	1115
SpeI	ACTAGT	1 cut(s)	56
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	3 cut(s)	460, 790, 854
SsiI	CCGC	7 cut(s)	74, 78, 92, 216, 421, 957, 1081
SspMI	CTAG	6 cut(s)	57, 339, 530, 903, 981, 1047
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	1011, 1040
TaaI	ACNGT	3 cut(s)	618, 669, 808
TaiI	ACGT	3 cut(s)	16, 833, 1117
TasI	AATT	3 cut(s)	460, 790, 854
TauI	GCSGC	4 cut(s)	77, 80, 94, 219
TfiI	GAWTC	2 cut(s)	876, 999
Tru1I	TTAA	4 cut(s)	180, 570, 626, 857
Tru9I	TTAA	4 cut(s)	180, 570, 626, 857
TscAI	CASTG	3 cut(s)	320, 647, 674
TseI	GCWGC	7 cut(s)	94, 101, 406, 448, 514, 551, 672
TspDTI	ATGAA	3 cut(s)	228, 311, 1057
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	3 cut(s)	320, 647, 674
Vha464I	CTTAAG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	638
VspI	ATTAAT	1 cut(s)	857
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XspI	CTAG	6 cut(s)	57, 339, 530, 903, 981, 1047
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.