Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Forward (+)

6551931 .. 6554748

Gene Structure 2818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAGAGCAGACAATGGGATTGGCAGATGCGGTACAACATCATAGTGAGCATTGCACGGGGACTCCTTCACCTTCATGACAGTCACTTTGTTCATGGCGATGTCAACGCTAGTAACATTTTGATAGATGCAGAAATAAATCCCAAAATTTCAAATTTTGGCATGGCAAGATTCTTTGCGGTTGATCAAATACAAGGCAACGTTAACGGAATTCATTTGCTGAATCTGATGTCTAACACATACATGGCTCCAGAGGCAATTTTTGGACATTCATCTGCAGAAGCTGATGTCTACAGTTTTGGTGCGTTAGTCGTGGAGATAGTAAGTGGACAAGAAATTAGTAGTTTGGCTTCCGAAAAGCTAAATGAGGAGGATCTTCTGAGATTTGCATGGAAGAATTGGGCAGAAGGGACAATTAGAAATCTAATAGATCCGACGTTGTGGACTGGTTCAGGAATTGAATTAATGGAGAGATGCATCAGTATCGGATTATTGTGTATGCAGCGGACTAGAACCGATAGGCCAACCATGTCTTCTGTTATTCAGATGCTTAGTCATTCTTCCGCTATCCCTCTACCTAATAAATTTAGGCATGGTACCTTTGGGATCATTGGAACCCTGAACAATGTGGAAGGTGTTTCTGATCCAAGGTCTAGAGCAAAAGTTCAGCCCTTCATTGCGAAGATCCGATATGCCACTACCGGCATCATCAATAAGATACGTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

243

Amino Acids

27.24

Weight (kDa)

8.6

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 184	1.1e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 182	5.8e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	4 cut(s)	31, 179, 505, 564
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	5 cut(s)	381, 425, 614, 638, 679
AcsI	RAATTY	4 cut(s)	147, 154, 210, 584
AfaI	GTAC	2 cut(s)	35, 598
AgsI	TTSAA	2 cut(s)	153, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	517, 549
AluBI	AGCT	2 cut(s)	284, 361
AluI	AGCT	2 cut(s)	284, 361
AlwI	GGATC	5 cut(s)	381, 425, 614, 638, 679
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	4 cut(s)	147, 154, 210, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AseI	ATTAAT	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	596
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	514
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	3 cut(s)	111, 510, 654
BfmI	CTRYAG	2 cut(s)	276, 292
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
BmiI	GGNNCC	3 cut(s)	249, 598, 616
BmsI	GCATC	6 cut(s)	18, 118, 464, 486, 537, 714
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	722
BsaJI	CCNNGG	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	2 cut(s)	51, 675
BseDI	CCNNGG	1 cut(s)	647
BseMI	GCAATG	2 cut(s)	51, 675
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	2 cut(s)	75, 424
BsmFI	GGGAC	2 cut(s)	75, 424
BsnI	GGCC	1 cut(s)	523
Bsp143I	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
BspACI	CCGC	4 cut(s)	31, 179, 505, 564
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	249, 598, 616
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	5 cut(s)	381, 425, 614, 638, 679
BspT107I	GGYRCC	1 cut(s)	596
BsrDI	GCAATG	2 cut(s)	51, 675
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	83, 296
BstBAI	YACGTR	1 cut(s)	722
BstDEI	CTNAG	2 cut(s)	380, 551
BstKTI	GATC	6 cut(s)	187, 376, 433, 609, 646, 687
BstMBI	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	276, 292
BstSNI	TACGTA	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	3 cut(s)	373, 430, 684
BstYI	RGATCY	3 cut(s)	373, 430, 684
BsuRI	GGCC	1 cut(s)	523
BtgZI	GCGATG	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	34, 597
CviAII	CATG	7 cut(s)	77, 95, 163, 244, 390, 529, 593
CviJI	RGCY	6 cut(s)	248, 284, 350, 361, 523, 670
CviKI_1	RGCY	6 cut(s)	248, 284, 350, 361, 523, 670
CviQI	GTAC	2 cut(s)	34, 597
DdeI	CTNAG	2 cut(s)	380, 551
DpnI	GATC	6 cut(s)	186, 375, 432, 608, 645, 686
DpnII	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
Eco105I	TACGTA	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	7 cut(s)	80, 98, 166, 247, 393, 532, 596
FaqI	GGGAC	2 cut(s)	75, 424
FatI	CATG	7 cut(s)	76, 94, 162, 243, 389, 528, 592
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	3 cut(s)	111, 510, 654
GluI	GCNGC	1 cut(s)	503
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	702
Hin1II	CATG	7 cut(s)	80, 98, 166, 247, 393, 532, 596
HincII	GTYRAC	2 cut(s)	106, 205
HindII	GTYRAC	2 cut(s)	106, 205
HinfI	GANTC	3 cut(s)	63, 171, 223
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	5 cut(s)	106, 205, 292, 329, 444
Hpy188I	TCNGA	8 cut(s)	228, 355, 381, 435, 488, 546, 643, 689
Hpy188III	TCNNGA	4 cut(s)	77, 251, 453, 654
Hpy8I	GTNNAC	5 cut(s)	106, 205, 292, 329, 444
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	5 cut(s)	77, 83, 401, 626, 682
HpyCH4III	ACNGT	2 cut(s)	83, 296
HpyCH4IV	ACGT	3 cut(s)	201, 437, 721
HpyCH4V	TGCA	7 cut(s)	4, 56, 131, 278, 389, 477, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	380, 551
HpySE526I	ACGT	3 cut(s)	201, 437, 721
Hsp92II	CATG	7 cut(s)	80, 98, 166, 247, 393, 532, 596
KpnI	GGTACC	1 cut(s)	600
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	264, 432, 438, 632, 715
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	6 cut(s)	18, 118, 464, 486, 537, 714
MaeI	CTAG	3 cut(s)	111, 510, 654
MaeII	ACGT	3 cut(s)	201, 437, 721
MaeIII	GTNAC	2 cut(s)	83, 113
MalI	GATC	6 cut(s)	186, 375, 432, 608, 645, 686
MboI	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
MboII	GAAGA	5 cut(s)	368, 406, 525, 552, 694
MflI	RGATCY	3 cut(s)	373, 430, 684
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	247, 361, 364, 582
Mph1103I	ATGCAT	1 cut(s)	479
MseI	TTAA	2 cut(s)	204, 464
MslI	CAYNNNNRTG	4 cut(s)	44, 75, 99, 242
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
NlaIII	CATG	7 cut(s)	80, 98, 166, 247, 393, 532, 596
NlaIV	GGNNCC	3 cut(s)	249, 598, 616
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	479
PagI	TCATGA	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	171, 223
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	249, 598, 616
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	3 cut(s)	373, 430, 684
RsaI	GTAC	2 cut(s)	35, 598
RsaNI	GTAC	2 cut(s)	34, 597
RseI	CAYNNNNRTG	4 cut(s)	44, 75, 99, 242
SaqAI	TTAA	2 cut(s)	204, 464
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	6 cut(s)	184, 373, 430, 606, 643, 684
SchI	GAGTC	1 cut(s)	57
SfaNI	GCATC	6 cut(s)	18, 118, 464, 486, 537, 714
SfcI	CTRYAG	2 cut(s)	276, 292
SmiMI	CAYNNNNRTG	4 cut(s)	44, 75, 99, 242
SnaBI	TACGTA	1 cut(s)	722
SsiI	CCGC	4 cut(s)	31, 179, 505, 564
SspMI	CTAG	3 cut(s)	111, 510, 654
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	83, 296
TaiI	ACGT	3 cut(s)	204, 440, 724
TfiI	GAWTC	2 cut(s)	171, 223
Tru1I	TTAA	2 cut(s)	204, 464
Tru9I	TTAA	2 cut(s)	204, 464
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	65, 83, 203, 261, 664
TspGWI	ACGGA	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	464
XapI	RAATTY	4 cut(s)	147, 154, 210, 584
XbaI	TCTAGA	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	3 cut(s)	111, 510, 654
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.