Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015694

Physical Location & Seq

Genomic Coordinates Reverse (-)

48475655 .. 48477042

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0370700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGAGGGGAAAGTCCTTAGTAAACCATCATTTAACTCACCCAGAATCCCTAGTCACATGGGAGATTATCAGAGCGCGCCCTAACCAAGGGAAGGTGAAGAAGCGAGGGACTACATGTGATTTTTATGGCCCAGAGTCGCCAGAATATGCCTCATTGCTACCGGAAGGCTGGCTCGCCGAGAAGAGAGTCATGCACCATGGGAGGAAATATATGTATTACTATGATCCGTTGGGGCATCAGTATACCACAAAAAAGGAAGTCAAGAAAGCTAAGCAAGCATCTAGGGTTCAGAATATTGAGGAGCCAGCTAGAGCTGAGGATCATACACTTCAGGTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

114

Amino Acids

13.29

Weight (kDa)

9.35

Isoelectric Point (pI)

67.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25911
rosa_chinensis	RchiOBHm_Chr1g0372241 RchiOBHm_Chr1g0372291
rosa_laevigata	RLG00000026912 RLG00000026913 RLG00000026914
rosa_multiflora	Rmu_sc0001755.1_g000014 Rmu_sc0001755.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285090 Rroxscaffold_4G00285120
rosa_rugosa	Rorug01G0370700
rosa_samantha	Rh1BG342500 Rh1CG356100 Rh1CG356200 Rh1DG373700 Rh1DG373900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	2 cut(s)	221, 330
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	89, 94
AflIII	ACRYGT	1 cut(s)	116
AluBI	AGCT	3 cut(s)	272, 311, 317
AluI	AGCT	3 cut(s)	272, 311, 317
AlwI	GGATC	2 cut(s)	221, 330
AoxI	GGCC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	79, 81
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	32, 109
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	36
BfaI	CTAG	3 cut(s)	53, 285, 312
BlpI	GCTNAGC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	2 cut(s)	247, 290
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	88, 199
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 94
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	88, 199
BseLI	CCNNNNNNNGG	2 cut(s)	89, 94
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	309
BsePI	GCGCGC	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	89, 94
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	226, 322
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	221, 330
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	88, 199
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	2 cut(s)	226, 322
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	88, 199
Bst1107I	GTATAC	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	5 cut(s)	79, 173, 177, 279, 309
BstDEI	CTNAG	3 cut(s)	19, 273, 318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	79, 81
BstKTI	GATC	2 cut(s)	229, 325
BstMBI	GATC	2 cut(s)	226, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	120
BstUI	CGCG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	79, 173, 177, 279, 309
CciI	TCATGA	1 cut(s)	341
CfoI	GCGC	2 cut(s)	79, 81
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	5 cut(s)	60, 117, 193, 200, 342
CviJI	RGCY	7 cut(s)	132, 171, 175, 272, 307, 311, 317
CviKI_1	RGCY	7 cut(s)	132, 171, 175, 272, 307, 311, 317
DdeI	CTNAG	3 cut(s)	19, 273, 318
DpnI	GATC	2 cut(s)	228, 324
DpnII	GATC	2 cut(s)	226, 322
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	88, 199
Eco57I	CTGAAG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	88, 199
ErhI	CCWWGG	2 cut(s)	88, 199
FaeI	CATG	5 cut(s)	63, 120, 196, 203, 345
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	5 cut(s)	59, 116, 192, 199, 341
FblI	GTMKAC	1 cut(s)	245
FspBI	CTAG	3 cut(s)	53, 285, 312
GlaI	GCGC	2 cut(s)	78, 80
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	79, 81
Hin1II	CATG	5 cut(s)	63, 120, 196, 203, 345
Hin6I	GCGC	2 cut(s)	77, 79
HinP1I	GCGC	2 cut(s)	77, 79
HinfI	GANTC	3 cut(s)	47, 137, 189
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	32, 109
Hpy166II	GTNNAC	2 cut(s)	25, 246
Hpy188I	TCNGA	2 cut(s)	74, 294
Hpy188III	TCNNGA	2 cut(s)	265, 342
Hpy8I	GTNNAC	2 cut(s)	25, 246
HpyAV	CCTTC	2 cut(s)	88, 161
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	19, 273, 318
Hsp92II	CATG	5 cut(s)	63, 120, 196, 203, 345
HspAI	GCGC	2 cut(s)	77, 79
Kzo9I	GATC	2 cut(s)	226, 322
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	57, 147, 156, 157, 177, 320, 321
LweI	GCATC	2 cut(s)	247, 290
MaeI	CTAG	3 cut(s)	53, 285, 312
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	228, 324
MboI	GATC	2 cut(s)	226, 322
MboII	GAAGA	2 cut(s)	112, 196
MlyI	GAGTC	2 cut(s)	146, 198
MnlI	CCTC	5 cut(s)	101, 163, 198, 295, 313
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	226, 322
NlaIII	CATG	5 cut(s)	63, 120, 196, 203, 345
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	120
PagI	TCATGA	1 cut(s)	341
PauI	GCGCGC	1 cut(s)	77
PciI	ACATGT	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	145, 197
PpsI	GAGTC	2 cut(s)	145, 197
PscI	ACATGT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	131
PteI	GCGCGC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	226, 322
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	146, 198
SetI	ASST	5 cut(s)	99, 274, 313, 319, 339
SfaNI	GCATC	2 cut(s)	247, 290
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	3 cut(s)	53, 285, 312
StyI	CCWWGG	2 cut(s)	88, 199
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	3 cut(s)	53, 285, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.