Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003903

Physical Location & Seq

Genomic Coordinates Reverse (-)

19818838 .. 19828843

Gene Structure 10006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4989 bp

ATGGGTAGAAGGAAGCAAAACCGGCCTCACCGGTCCGGTGGGATTGTGTTAGAGAGTCAGGGAACTGCTGGCAGGGAAGAATTGGATGAGGGGAGGGTTTTAAATGGGGAAGCTGCGCAAAAGAATGGCTTGGATGAGGTTGAGAGACTGTATTTTGTGGAAGTTGATCCGACTAATTGGGGGTCGGATGAGCACTTTGATATTGCTGAAGTGGTTTTAAAAGATTTGGTTTTCGGAGAAGGGTTCTGCAGTGATGTTCTTAGTGGGGGTTTGGATCGCGGTAGTTACTATTTAAGGTTCCGGTTATCTAATGTGAAGGAGTTTGTTAATCGTATTAAGCTTGGTCACTGGCCATTGTTGTGCTCTGCTGATATATCCTTTGAATTTGTTAAAACATGTTCAAGTGAGGATATGGATATGGATATGGAGAAGGACACGTGCTCAGTGATCTTGTCAGGGAGTTTCGATGGGCCAGATGAAGGTGTTTCTGGTCTGGTTCACTTGGCCAGTTTGAAGTTTATGACACTGAGGCCAGCTCTGTCAATTGGGTTTGTGGATAATACGTCAACCATCACGGTCAGGGTGGAAATACTTAAGAGTGCATTTGATGCTTGTGAGTCACTTTTGGACAATACTAGGCAAGTATGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACACCCAGAAGTAGTGACTTCGGAGGGTAGGTATGGAGTCGGTAAATCAACAGACATGGAACTTGATTTGCATACTGACACTGGACATACTAATTCAAATCATAGTAAACATCCAAGATTTGATGTTGCTGGGTTCTATGAAGCCATTAAACCCTCAAAAGCAGATGCCATGCTTCAAGATGTCCTGCCTGATTTGCTTCCTGAACTGAAACCATATCAGCGCCGTGCAGCTTACTGGATGGTACAGAGGGAGAAAAACAACACAGAAAGAAGTCAGTTCTTATCGCCTTTTTGTTTGCCCTTGCAATTTCTCGATAGATGTTCAAAAATGTTCTACAACCCATTCAGTGGAAACGTTTCGCTGCACCAAGAGCATTCTTCAACATACGTCTCTGGTGGTATTCTTGCTGATGAGATGGGCATGGGGAAAACTGTTGAACTTCTCGCTTGCATCTTTGCTCATCAGAAGTCAGCAGATGAAGACCCCATACTTGCTGATGCTGAAATTCAAGATACCGAGGATCTGAAAATAAAGCTTAAAAGATTAAAAAGGGAGCGAGTTGAATGTATATGTGGAGCTGTGAGTGACAATGGCAGATACAGAGGACTATGGGTACAGTGTGACATATGTGATGCATGGCAACATGCCGATTGTGTTGGCTATTCACCTAGTGGAAAGACTATAAAGTCCAACGAGGCTTCTAACGAAAAAGAACATGACAAGAGTTTGGTGGATAAGAAGTATAGTAGAAAGAAGAATACAACCACAATAGATGTGAGAGATGAGGAATATATATGCCAGCTGTGCTCAGAATTGACACAGGCCACTAATTCTCCTGTTGCTACTGGTGCCACTCTTATAATCTGTCCAGCTTCTATATTACCACAGTGGCATTCTGAAATTATGCGACATACATGTTCGGGTTCTCTAAAGACTTGTGTCTATGAAGGTGTAAGAGAGGTGTCTTTTACAGACACATCTGTAATTGATATCAGTGAACTCATTAGTGCTGATATTGTATTGACGACATATGATGTGCTTAAAGCGGACCTGTCACATGACTCTGATAGGCATGAAGGTGATCGGCGCTTAATGAGATTCCAAAAGAGATACCCTGTTGTTCCAACTATCCTTACCAGAATATTCTGGTGGAGAATTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGTTGGTCCTGCAACAGAAATGGCTATGCGCCTGTATGCAAAGCATCGTTGGTGCATAACGGGGACTCCTATACAACGTAAACTTGATGACTTATATGGACTTCTACGGTTTCTTAAAGCATACCCATTCGATGCTTCTCGGTGGTGGATTGAAGTTATACGAGATCCATATGAGAGGAGAGATGCAGGAGCTATGGAATTTACACATAAATTCTTTAAAGAAATCATGTGGCGATCTTCAAAAGTGCATGTTGCAGATGAGTTGCAGCTTCCACCTCAGGAAGAATGTCTCTCTTGGCTCACTCTATCTCCAGTTGAAGAGCATTTTTACCAGAGGCAACATGAAACTTGTGTTAGTTATGCCCGAGAAGTTATTCAAAGTTTGAAAGATGATATTATGAAGAGAAAAGTCAAAGGATGCTCAGCAGTTAAATCATCAGATTATTTCATCACACATGCAGAGGCAGGAAAGCTGCTGAACACACTTCTGAAGCTTCGCCAAGCCAGCTGTCACCCTCAAGTAGGAAGCTCAGGCCTGCGTTTGCGTTCTCTCCAACAGTCTCCCATGACTATGGAGGAAATTTTAATGGTTCTTGTTAGTAAAACAAAGATAGAAGGAGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTTAATGGCCTTGCTGGGATAGCTGTAATTGAGCAAAATTTTACTCAAGCTGTATCACTGTATAAGGAATCGTTGACTTTAGCTGAAGAGCACGCCGAGGATTTCCGCCTGGATCCTTTGTTGAGTATTCACATTCATCATAATCTTGCTGAAATACTTCCATTAGCAACAAGCAGTTTCCCTTCAAAAGCAGAACATATGGGCCCCTGTCATGAACATATAGCGAAGAGGCAAAAACTGACTGGGGGAGATAACTCATCAGAGAATGACTTTTCTAGCGCCCAAGAATATGATAATGTTTCCCATACATCATGTAGTTCCTTCACTGACGTATCTTTGAGAATAGTCTGTGACAATCTTAAACAAAAGTATTTATCTGCATTTAATTCAAAGTTATGCATGACTCAGCAAGAGTTTAAGAAGTCTTACACCCAGGTTTGTAGCACAATTAGTGAGGTAAAAGATGTCAGCACAGTCTGGTGGTTAGAAGCCCTTCTTCATGCTGAAAAGAATCATGACATTTGTAGTCTGTTGATCAGAAAGATTGAAGAGGCGCTCATAGGAAATCTCAACAGTTCAAATTCATCTAGAATTCCATCTCGTTTACGAAGCATAAGCGCTATAAAGTATCACATGCAGATCGGTTTGGACCAACTAGAAGAATCTAGGAAAATGTTACTTGATCGACTTTTAGAAATTGATCAGACAATGGAGAAGCCAAAAGAGGAGGATATCCAGCGTGTGAGATACTGTCGAAATTGCAAAGCTCACGATGGTGGTCCCTTGTGTGTTCTTTGTGAAGTAGATGAATTATTTCAGGGTTATGAAGCAAGGCTCTTTCGTCTTGAGAAAGTATCCGGAGGTGTTGCTACCTCTGCTGAAGAGGCTGTGGATTTGCAGAAGAAAAACTCTGCTCTTAATCGTTTCTATCAAAATTTGTCACAGCCAATTAAGGATTCAGCATCACCCAAATATATTCAAGAATCAAAGAAGAGAGATGTTGGAAAAGTTGTGGTTTCAAAATCCCCATCTGAATTAGAGGTTGTTCTTGGAGTCATAAAAAACCATTGCAAGGCCCATTTAGGAAAGGAAGGGATATCAGAAGCTACCAAGCACCTACAAATTCTTGAGGGCATGCGCAAGGAGTATGGCCATGCAAGATCCTTGGCAATAGCTCAAGCTCAGATTCTGCAAGCTTATGATGAAATTAATATGGCAACTACAAGGTTGCGTCTCAGGGAAGATGAGAATGATAAATCTCTTGATGCATTAAGTGAAGATGAATTACCTTCAGCTAACGTTTTGAACACCAGTGAAAAGTTTGCATCCTTGAGCTTGTTGTCGTGTATAAAAGGGAAACTTCGTTATTTGAAGGGTTTGGAAGCTAAACAAAAAATGCCATTGAGAAGTCCAAATCATTCCTCGGTAACTGAAGAGGAAGCCACCGTGTCAACTTCTACACAACAGAGAAATGAATGCGTACCTACAGGTGATAAAGAAACTTGCCCAGTATGTCAAGAACAGTTAACCATTCGAAAGATGGTTTTCCCGTGTGGACATCTTACTTGCTGTAAATGTTTATTTGTAATTACTGAGAGACTACTCAATGGGAAAAGGGTTCAAGATAAGTGGGTAAAATGCCCAACATGTCGCCAGCATACTGATGTTGCAAATATTGCTTTTGCTGATGATGGACAAAGTGAACCTTGTGGTTCTGGTAGGCTTCAGGCAATCCAAAGTCGTGAAGAGTGTGAAAAATCTATTATAGTTCAAGGTTCATATGGAACAAAGATTGAAGCAGTTACAAGAAGAATTATGTGGATAAAGTCTACAGATCCAGAGGCTAAAGTTCTTGTTTTTTCAAGCTGGAATGATGTCCTTGACGTGTTGGAGCATGCCTTCATTGCTAATGGCATTACCTTTATAAGGATGAAAGGAGGAAGGAAATCACAAGTTGCCATTAGTGAATTCAAAGGAGAAAAGAGAAGCTTAACAGGATATCACAAGTTGCATGGCCGAAACCCAGAAGGAAGATCTATTCAAGTATTGCTGCTCTTAATTCAGCACGGAGCGAATGGCCTCAATCTGTTGGAAGCGAAGCATGTTATTCTCATAGAGCCGCTTCTTAATCCAGCAGTAGAAGCACAAGCTATCAGCAGGGTACACCGAATTGGACAGACAAATAAGACCCTTGCTCATCGTTTTATAGTTAAAGGCACAGTTGAAGAGAGCATATACAAGCTCAACAAAAGCAGGAATAGCACTACCTTCATTAGCGGTAACACAAAGAACCAAGATCAGCCCTTATTGACACTAAAAGACATTGAAGCCTTATTTTCAATAGTGCCATCATTACCCATACCAGAGACTGATGAAAAGCCAACTGAAAGTGAAAGCTTAAGACATTTGCCACCTTCTGTGGCTGCTGCCATTGCTGCTGAGAAGCGGCTCAATTCGAGTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C PHD SNF2_N zf-C3HC4

Protein Analysis

1663

Amino Acids

187.14

Weight (kDa)

6.36

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	299 - 797	2.3e-62	SNF2-related domain
SHPRH_helical-1st	PF21325	815 - 898	2.2e-24	E3 ubiquitin-protein ligase SHPRH, first helical domain
Helicase_C	PF00271	1439 - 1565	1.2e-06	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40770 AT2G40770 AT2G40770
fragaria_vesca	FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110
malus_domestica	MD01G1169300.v1.1
prunus_persica	Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1
pyrus_communis	pycom01g18200
rosa_chinensis	RchiOBHm_Chr1g0372551
rosa_laevigata	RLG00000026892
rosa_multiflora	Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284860
rosa_rugosa	Rorug01G0372700
rosa_samantha	Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800
rosa_wichuraiana	Rw1G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1541, 4445
AasI	GACNNNNNNGTC	1 cut(s)	1366
Acc16I	TGCGCA	2 cut(s)	117, 3659
AccB1I	GGYRCC	1 cut(s)	1529
AccB7I	CCANNNNNTGG	1 cut(s)	1028
AccI	GTMKAC	1 cut(s)	4349
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	3377
AciI	CCGC	6 cut(s)	279, 1727, 2626, 4640, 4797, 4966
AclI	AACGTT	2 cut(s)	1035, 3819
AclWI	GGATC	8 cut(s)	161, 282, 1209, 2030, 2627, 2640, 3675, 4349
AcoI	YGGCCR	4 cut(s)	350, 504, 3670, 4534
AcuI	CTGAAG	7 cut(s)	228, 2381, 2625, 3420, 3795, 3972, 4229
AcvI	CACGTG	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	1352
AfaI	GTAC	4 cut(s)	924, 1296, 4002, 4683
AfeI	AGCGCT	1 cut(s)	3139
AfiI	CCNNNNNNNGG	5 cut(s)	479, 1028, 2393, 3592, 4446
AflII	CTTAAG	2 cut(s)	593, 4918
AflIII	ACRYGT	5 cut(s)	395, 435, 1595, 4166, 4404
AgeI	ACCGGT	1 cut(s)	30
AjiI	CACGTC	1 cut(s)	4405
AjnI	CCWGG	2 cut(s)	2628, 2952
AjuI	GAANNNNNNNTTGG	2 cut(s)	3460, 3492
AleI	CACNNNNGTG	1 cut(s)	3294
Alw21I	GWGCWC	5 cut(s)	195, 365, 443, 1490, 2613
Alw26I	GTCTC	7 cut(s)	139, 1075, 2165, 2436, 3758, 4111, 4880
AlwI	GGATC	8 cut(s)	161, 282, 1209, 2030, 2627, 2640, 3675, 4349
AlwNI	CAGNNNCTG	2 cut(s)	3709, 4889
Ama87I	CYCGRG	1 cut(s)	2235
Aor13HI	TCCGGA	1 cut(s)	3377
Aor51HI	AGCGCT	1 cut(s)	3139
ApaI	GGGCCC	1 cut(s)	2726
ApeKI	GCWGC	9 cut(s)	113, 908, 1042, 2137, 2344, 4570, 4943, 4946, 4955
AseI	ATTAAT	1 cut(s)	3729
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	5 cut(s)	1036, 2244, 2676, 3012, 3333
AspLEI	GCGC	8 cut(s)	118, 903, 1770, 1902, 2801, 3076, 3140, 3660
AspS9I	GGNCC	9 cut(s)	33, 470, 1729, 1877, 2722, 2723, 3169, 3299, 3595
AsuHPI	GGTGA	6 cut(s)	20, 1338, 1772, 2375, 3477, 4022
AsuII	TTCGAA	1 cut(s)	4054
AvaI	CYCGRG	1 cut(s)	2235
AvaII	GGWCC	5 cut(s)	33, 1729, 1877, 3169, 3299
AxyI	CCTNAGG	1 cut(s)	2148
BaeGI	GKGCMC	1 cut(s)	2726
BaeI	ACNNNNGTAYC	2 cut(s)	2835, 2868
BalI	TGGCCA	3 cut(s)	352, 506, 3672
BamHI	GGATCC	1 cut(s)	2632
BanI	GGYRCC	1 cut(s)	1529
BanII	GRGCYC	1 cut(s)	2726
BarI	GAAGNNNNNNTAC	4 cut(s)	1152, 1184, 3789, 3821
BbrPI	CACGTG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	1167
Bbv12I	GWGCWC	5 cut(s)	195, 365, 443, 1490, 2613
BbvI	GCAGC	9 cut(s)	100, 920, 1029, 2149, 2331, 4557, 4930, 4933, 4942
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	2 cut(s)	2630, 2954
BciVI	GTATCC	1 cut(s)	3385
BclI	TGATCA	2 cut(s)	3054, 3220
BcoDI	GTCTC	7 cut(s)	139, 1075, 2165, 2436, 3758, 4111, 4880
BfaI	CTAG	6 cut(s)	636, 1350, 2796, 3108, 3176, 3186
BfmI	CTRYAG	3 cut(s)	247, 4005, 4350
BfoI	RGCGCY	5 cut(s)	904, 1771, 2802, 3077, 3141
BfrI	CTTAAG	2 cut(s)	593, 4918
BfuI	GTATCC	1 cut(s)	3385
BglII	AGATCT	1 cut(s)	4553
BlpI	GCTNAGC	1 cut(s)	2293
Bme1390I	CCNGG	2 cut(s)	2630, 2954
Bme18I	GGWCC	5 cut(s)	33, 1729, 1877, 3169, 3299
BmeT110I	CYCGRG	1 cut(s)	2235
BmgBI	CACGTC	1 cut(s)	4405
BmgT120I	GGNCC	9 cut(s)	33, 470, 1729, 1877, 2722, 2723, 3169, 3299, 3595
BmiI	GGNNCC	6 cut(s)	299, 1531, 2634, 2724, 2725, 3301
BmrFI	CCNGG	2 cut(s)	2630, 2954
BmrI	ACTGGG	2 cut(s)	2772, 4022
BmuI	ACTGGG	2 cut(s)	2772, 4022
BoxI	GACNNNNGTC	1 cut(s)	1619
BpiI	GAAGAC	1 cut(s)	1167
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	1 cut(s)	2166
Bpu10I	CCTNAGC	1 cut(s)	2401
Bpu1102I	GCTNAGC	1 cut(s)	2293
Bpu14I	TTCGAA	1 cut(s)	4054
BpuEI	CTTGAG	6 cut(s)	2373, 2550, 3386, 3668, 3681, 3871
BsaAI	YACGTR	1 cut(s)	438
BsaJI	CCNNGG	5 cut(s)	1197, 2616, 2952, 3684, 3942
BsaWI	WCCGGW	4 cut(s)	30, 35, 300, 3377
Bsc4I	CCNNNNNNNGG	5 cut(s)	479, 1028, 2393, 3592, 4446
Bse118I	RCCGGY	2 cut(s)	21, 30
Bse1I	ACTGG	9 cut(s)	353, 507, 766, 920, 1531, 2183, 2767, 3831, 4028
Bse21I	CCTNAGG	1 cut(s)	2148
Bse3DI	GCAATG	3 cut(s)	3586, 4422, 4950
BseAI	TCCGGA	1 cut(s)	3377
BseBI	CCWGG	2 cut(s)	2630, 2954
BseDI	CCNNGG	5 cut(s)	1197, 2616, 2952, 3684, 3942
BseGI	GGATG	9 cut(s)	91, 139, 193, 790, 924, 1852, 2294, 3845, 4455
BseLI	CCNNNNNNNGG	5 cut(s)	479, 1028, 2393, 3592, 4446
BseMI	GCAATG	3 cut(s)	3586, 4422, 4950
BseNI	ACTGG	9 cut(s)	353, 507, 766, 920, 1531, 2183, 2767, 3831, 4028
BseRI	GAGGAG	2 cut(s)	2062, 3260
BseSI	GKGCMC	1 cut(s)	2726
BseXI	GCAGC	9 cut(s)	100, 920, 1029, 2149, 2331, 4557, 4930, 4933, 4942
BseYI	CCCAGC	2 cut(s)	809, 2534
BsgI	GTGCAG	2 cut(s)	927, 1028
Bsh1236I	CGCG	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	1529
BshTI	ACCGGT	1 cut(s)	30
BsiHKAI	GWGCWC	5 cut(s)	195, 365, 443, 1490, 2613
BsiHKCI	CYCGRG	1 cut(s)	2235
BsiSI	CCGG	5 cut(s)	22, 31, 36, 301, 3378
BslFI	GGGAC	2 cut(s)	1948, 3285
BslI	CCNNNNNNNGG	5 cut(s)	479, 1028, 2393, 3592, 4446
BsmAI	GTCTC	7 cut(s)	139, 1075, 2165, 2436, 3758, 4111, 4880
BsmBI	CGTCTC	2 cut(s)	1075, 3758
BsmFI	GGGAC	2 cut(s)	1948, 3285
BsmI	GAATGC	3 cut(s)	1054, 1573, 4001
BsoBI	CYCGRG	1 cut(s)	2235
Bsp119I	TTCGAA	1 cut(s)	4054
Bsp120I	GGGCCC	1 cut(s)	2722
Bsp1286I	GDGCHC	6 cut(s)	195, 365, 443, 1490, 2613, 2726
Bsp13I	TCCGGA	1 cut(s)	3377
Bsp1720I	GCTNAGC	1 cut(s)	2293
BspACI	CCGC	6 cut(s)	279, 1727, 2626, 4640, 4797, 4966
BspEI	TCCGGA	1 cut(s)	3377
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	3 cut(s)	2731, 3034, 4985
BspLI	GGNNCC	6 cut(s)	299, 1531, 2634, 2724, 2725, 3301
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	8 cut(s)	161, 282, 1209, 2030, 2627, 2640, 3675, 4349
BspQI	GCTCTTC	2 cut(s)	2184, 2601
BspT104I	TTCGAA	1 cut(s)	4054
BspT107I	GGYRCC	1 cut(s)	1529
BspTI	CTTAAG	2 cut(s)	593, 4918
BsrDI	GCAATG	3 cut(s)	3586, 4422, 4950
BsrFI	RCCGGY	2 cut(s)	21, 30
BsrI	ACTGG	9 cut(s)	353, 507, 766, 920, 1531, 2183, 2767, 3831, 4028
BssAI	RCCGGY	2 cut(s)	21, 30
BssECI	CCNNGG	5 cut(s)	1197, 2616, 2952, 3684, 3942
BssT1I	CCWWGG	1 cut(s)	3684
Bst2UI	CCWGG	2 cut(s)	2630, 2954
BstAFI	CTTAAG	2 cut(s)	593, 4918
BstAPI	GCANNNNNTGC	2 cut(s)	608, 4196
BstBAI	YACGTR	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	4054
BstENI	CCTNNNNNAGG	2 cut(s)	2391, 4444
BstF5I	GGATG	9 cut(s)	91, 139, 193, 790, 924, 1852, 2294, 3845, 4455
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	5 cut(s)	904, 1771, 2802, 3077, 3141
BstHHI	GCGC	8 cut(s)	118, 903, 1770, 1902, 2801, 3076, 3140, 3660
BstMAI	GTCTC	7 cut(s)	139, 1075, 2165, 2436, 3758, 4111, 4880
BstNI	CCWGG	2 cut(s)	2630, 2954
BstPAI	GACNNNNGTC	1 cut(s)	1619
BstSCI	CCNGG	2 cut(s)	2628, 2952
BstSFI	CTRYAG	3 cut(s)	247, 4005, 4350
BstSLI	GKGCMC	1 cut(s)	2726
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	9 cut(s)	100, 920, 1029, 2149, 2331, 4557, 4930, 4933, 4942
BstV2I	GAAGAC	1 cut(s)	1167
BstX2I	RGATCY	6 cut(s)	1201, 2035, 2632, 3680, 4354, 4553
BstXI	CCANNNNNNTGG	1 cut(s)	2443
BstYI	RGATCY	6 cut(s)	1201, 2035, 2632, 3680, 4354, 4553
Bsu36I	CCTNAGG	1 cut(s)	2148
BsuI	GTATCC	1 cut(s)	3385
BtrI	CACGTC	1 cut(s)	4405
BtsCI	GGATG	9 cut(s)	91, 139, 193, 790, 924, 1852, 2294, 3845, 4455
BtsI	GCAGTG	1 cut(s)	256
CaiI	CAGNNNCTG	2 cut(s)	3709, 4889
CciI	TCATGA	3 cut(s)	2731, 3034, 4985
CfoI	GCGC	8 cut(s)	118, 903, 1770, 1902, 2801, 3076, 3140, 3660
Cfr10I	RCCGGY	2 cut(s)	21, 30
Cfr13I	GGNCC	9 cut(s)	33, 470, 1729, 1877, 2722, 2723, 3169, 3299, 3595
CpoI	CGGWCCG	1 cut(s)	33
CseI	GACGC	1 cut(s)	3740
Csp6I	GTAC	4 cut(s)	923, 1295, 4001, 4682
CspAI	ACCGGT	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	4130, 4165
CspI	CGGWCCG	1 cut(s)	33
CviQI	GTAC	4 cut(s)	923, 1295, 4001, 4682
DraI	TTTAAA	3 cut(s)	102, 219, 2089
DraIII	CACNNNGTG	1 cut(s)	1352
DrdI	GACNNNNNNGTC	1 cut(s)	1366
DseDI	GACNNNNNNGTC	1 cut(s)	1366
EaeI	YGGCCR	4 cut(s)	350, 504, 3670, 4534
EciI	GGCGGA	1 cut(s)	2615
Eco130I	CCWWGG	1 cut(s)	3684
Eco147I	AGGCCT	1 cut(s)	2406
Eco24I	GRGCYC	1 cut(s)	2726
Eco32I	GATATC	4 cut(s)	1672, 3253, 3618, 4520
Eco47I	GGWCC	5 cut(s)	33, 1729, 1877, 3169, 3299
Eco47III	AGCGCT	1 cut(s)	3139
Eco57I	CTGAAG	7 cut(s)	228, 2381, 2625, 3420, 3795, 3972, 4229
Eco72I	CACGTG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	2148
Eco88I	CYCGRG	1 cut(s)	2235
EcoNI	CCTNNNNNAGG	2 cut(s)	2391, 4444
EcoO109I	RGGNCCY	1 cut(s)	2723
EcoRI	GAATTC	2 cut(s)	3111, 4487
EcoRII	CCWGG	2 cut(s)	2628, 2952
EcoRV	GATATC	4 cut(s)	1672, 3253, 3618, 4520
EcoT14I	CCWWGG	1 cut(s)	3684
EcoT22I	ATGCAT	3 cut(s)	1318, 2921, 3790
EcoT38I	GRGCYC	1 cut(s)	2726
ErhI	CCWWGG	1 cut(s)	3684
Esp3I	CGTCTC	2 cut(s)	1075, 3758
FaqI	GGGAC	2 cut(s)	1948, 3285
FauNDI	CATATG	5 cut(s)	1307, 1711, 2041, 2718, 4300
FbaI	TGATCA	2 cut(s)	3054, 3220
FblI	GTMKAC	1 cut(s)	4349
FokI	GGATG	9 cut(s)	98, 146, 200, 777, 931, 1859, 2301, 3832, 4462
FriOI	GRGCYC	1 cut(s)	2726
FspBI	CTAG	6 cut(s)	636, 1350, 2796, 3108, 3176, 3186
FspI	TGCGCA	2 cut(s)	117, 3659
GlaI	GCGC	8 cut(s)	117, 902, 1769, 1901, 2800, 3075, 3139, 3659
GsaI	CCCAGC	2 cut(s)	813, 2538
GsuI	CTGGAG	1 cut(s)	2166
HaeII	RGCGCY	5 cut(s)	904, 1771, 2802, 3077, 3141
HapII	CCGG	5 cut(s)	22, 31, 36, 301, 3378
HgaI	GACGC	1 cut(s)	3740
HhaI	GCGC	8 cut(s)	118, 903, 1770, 1902, 2801, 3076, 3140, 3660
Hin6I	GCGC	8 cut(s)	116, 901, 1768, 1900, 2799, 3074, 3138, 3658
HinP1I	GCGC	8 cut(s)	116, 901, 1768, 1900, 2799, 3074, 3138, 3658
HincII	GTYRAC	4 cut(s)	567, 2595, 3972, 4047
HindII	GTYRAC	4 cut(s)	567, 2595, 3972, 4047
HindIII	AAGCTT	6 cut(s)	338, 1214, 2363, 3714, 4507, 4915
HpaI	GTTAAC	1 cut(s)	4047
HpaII	CCGG	5 cut(s)	22, 31, 36, 301, 3378
HphI	GGTGA	6 cut(s)	20, 1338, 1772, 2375, 3477, 4022
HpyCH4IV	ACGT	8 cut(s)	437, 563, 1035, 1068, 1948, 2850, 3819, 4404
HpySE526I	ACGT	8 cut(s)	437, 563, 1035, 1068, 1948, 2850, 3819, 4404
HspAI	GCGC	8 cut(s)	116, 901, 1768, 1900, 2799, 3074, 3138, 3658
Kpn2I	TCCGGA	1 cut(s)	3377
Ksp22I	TGATCA	2 cut(s)	3054, 3220
KspAI	GTTAAC	1 cut(s)	4047
LguI	GCTCTTC	2 cut(s)	2184, 2601
LmnI	GCTCC	5 cut(s)	1234, 1256, 2060, 4411, 4589
Lsp1109I	GCAGC	9 cut(s)	100, 920, 1029, 2149, 2331, 4557, 4930, 4933, 4942
MaeI	CTAG	6 cut(s)	636, 1350, 2796, 3108, 3176, 3186
MaeII	ACGT	8 cut(s)	437, 563, 1035, 1068, 1948, 2850, 3819, 4404
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	6 cut(s)	1201, 2035, 2632, 3680, 4354, 4553
MhlI	GDGCHC	6 cut(s)	195, 365, 443, 1490, 2613, 2726
MlsI	TGGCCA	3 cut(s)	352, 506, 3672
MluNI	TGGCCA	3 cut(s)	352, 506, 3672
MlyI	GAGTC	7 cut(s)	64, 626, 726, 1736, 1930, 2917, 3582
MmeI	TCCRAC	8 cut(s)	165, 194, 1395, 1829, 2449, 3502, 4389, 4590
Mox20I	TGGCCA	3 cut(s)	352, 506, 3672
Mph1103I	ATGCAT	3 cut(s)	1318, 2921, 3790
MroI	TCCGGA	1 cut(s)	3377
MroXI	GAANNNNTTC	5 cut(s)	1036, 2244, 2676, 3012, 3333
MscI	TGGCCA	3 cut(s)	352, 506, 3672
MslI	CAYNNNNRTG	5 cut(s)	358, 1758, 2441, 3294, 4182
Msp20I	TGGCCA	3 cut(s)	352, 506, 3672
MspA1I	CMGCKG	2 cut(s)	1483, 2379
MspCI	CTTAAG	2 cut(s)	593, 4918
MspI	CCGG	5 cut(s)	22, 31, 36, 301, 3378
MspR9I	CCNGG	2 cut(s)	2630, 2954
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	3 cut(s)	1054, 1573, 4001
MvaI	CCWGG	2 cut(s)	2630, 2954
MvnI	CGCG	1 cut(s)	279
NdeI	CATATG	5 cut(s)	1307, 1711, 2041, 2718, 4300
NlaIV	GGNNCC	6 cut(s)	299, 1531, 2634, 2724, 2725, 3301
NmeAIII	GCCGAG	1 cut(s)	2641
NmuCI	GTSAC	9 cut(s)	344, 618, 694, 1265, 1301, 1734, 2381, 2870, 3459
NsbI	TGCGCA	2 cut(s)	117, 3659
NsiI	ATGCAT	3 cut(s)	1318, 2921, 3790
NspV	TTCGAA	1 cut(s)	4054
OliI	CACNNNNGTG	1 cut(s)	3294
PaeI	GCATGC	2 cut(s)	3658, 4418
PagI	TCATGA	3 cut(s)	2731, 3034, 4985
PceI	AGGCCT	1 cut(s)	2406
PciI	ACATGT	3 cut(s)	395, 1595, 4166
PciSI	GCTCTTC	2 cut(s)	2184, 2601
PctI	GAATGC	3 cut(s)	1054, 1573, 4001
PdmI	GAANNNNTTC	5 cut(s)	1036, 2244, 2676, 3012, 3333
PfeI	GAWTC	7 cut(s)	1779, 2588, 3031, 3182, 3476, 3503, 3706
PflMI	CCANNNNNTGG	1 cut(s)	1028
PinAI	ACCGGT	1 cut(s)	30
PleI	GAGTC	7 cut(s)	63, 625, 725, 1736, 1930, 2917, 3581
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
PpsI	GAGTC	7 cut(s)	63, 625, 725, 1736, 1930, 2917, 3581
Ppu21I	YACGTR	1 cut(s)	438
PscI	ACATGT	3 cut(s)	395, 1595, 4166
PshAI	GACNNNNGTC	1 cut(s)	1619
PshBI	ATTAAT	1 cut(s)	3729
PsiI	TTATAA	2 cut(s)	1541, 4445
Psp1406I	AACGTT	2 cut(s)	1035, 3819
Psp6I	CCWGG	2 cut(s)	2628, 2952
PspCI	CACGTG	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	809, 2534
PspGI	CCWGG	2 cut(s)	2628, 2952
PspN4I	GGNNCC	6 cut(s)	299, 1531, 2634, 2724, 2725, 3301
PspOMI	GGGCCC	1 cut(s)	2722
PspPI	GGNCC	9 cut(s)	33, 470, 1729, 1877, 2722, 2723, 3169, 3299, 3595
PstI	CTGCAG	1 cut(s)	251
PstNI	CAGNNNCTG	2 cut(s)	3709, 4889
PsuI	RGATCY	6 cut(s)	1201, 2035, 2632, 3680, 4354, 4553
PvuII	CAGCTG	2 cut(s)	1483, 2379
RsaI	GTAC	4 cut(s)	924, 1296, 4002, 4683
RsaNI	GTAC	4 cut(s)	923, 1295, 4001, 4682
RseI	CAYNNNNRTG	5 cut(s)	358, 1758, 2441, 3294, 4182
Rsr2I	CGGWCCG	1 cut(s)	33
RsrII	CGGWCCG	1 cut(s)	33
SapI	GCTCTTC	2 cut(s)	2184, 2601
Sau96I	GGNCC	9 cut(s)	33, 470, 1729, 1877, 2722, 2723, 3169, 3299, 3595
SchI	GAGTC	7 cut(s)	64, 626, 726, 1736, 1930, 2917, 3582
ScrFI	CCNGG	2 cut(s)	2630, 2954
SduI	GDGCHC	6 cut(s)	195, 365, 443, 1490, 2613, 2726
SfcI	CTRYAG	3 cut(s)	247, 4005, 4350
SfuI	TTCGAA	1 cut(s)	4054
SinI	GGWCC	5 cut(s)	33, 1729, 1877, 3169, 3299
SmiMI	CAYNNNNRTG	5 cut(s)	358, 1758, 2441, 3294, 4182
SmlI	CTYRAG	8 cut(s)	593, 2388, 2565, 3365, 3647, 3696, 3850, 4918
SmoI	CTYRAG	8 cut(s)	593, 2388, 2565, 3365, 3647, 3696, 3850, 4918
SphI	GCATGC	2 cut(s)	3658, 4418
SseBI	AGGCCT	1 cut(s)	2406
SsiI	CCGC	6 cut(s)	279, 1727, 2626, 4640, 4797, 4966
SspI	AATATT	2 cut(s)	1824, 4195
SspMI	CTAG	6 cut(s)	636, 1350, 2796, 3108, 3176, 3186
StuI	AGGCCT	1 cut(s)	2406
StyD4I	CCNGG	2 cut(s)	2628, 2952
StyI	CCWWGG	1 cut(s)	3684
TaiI	ACGT	8 cut(s)	440, 566, 1038, 1071, 1951, 2853, 3822, 4407
TaqI	TCGA	7 cut(s)	465, 993, 2001, 3205, 3274, 4054, 4976
TauI	GCSGC	2 cut(s)	4642, 4969
TfiI	GAWTC	7 cut(s)	1779, 2588, 3031, 3182, 3476, 3503, 3706
TseFI	GTSAC	9 cut(s)	344, 618, 694, 1265, 1301, 1734, 2381, 2870, 3459
TseI	GCWGC	9 cut(s)	113, 908, 1042, 2137, 2344, 4570, 4943, 4946, 4955
Tsp45I	GTSAC	9 cut(s)	344, 618, 694, 1265, 1301, 1734, 2381, 2870, 3459
TspGWI	ACGGA	1 cut(s)	4602
Van91I	CCANNNNNTGG	1 cut(s)	1028
Vha464I	CTTAAG	2 cut(s)	593, 4918
VpaK11BI	GGWCC	5 cut(s)	33, 1729, 1877, 3169, 3299
VspI	ATTAAT	1 cut(s)	3729
XagI	CCTNNNNNAGG	2 cut(s)	2391, 4444
XbaI	TCTAGA	1 cut(s)	3107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4057
XmiI	GTMKAC	1 cut(s)	4349
XmnI	GAANNNNTTC	5 cut(s)	1036, 2244, 2676, 3012, 3333
XspI	CTAG	6 cut(s)	636, 1350, 2796, 3108, 3176, 3186
Zsp2I	ATGCAT	3 cut(s)	1318, 2921, 3790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.