E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40770 AT2G40770 AT2G40770 |
| fragaria_vesca | FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 |
| malus_domestica | MD01G1169300.v1.1 |
| prunus_persica | Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 |
| pyrus_communis | pycom01g18200 |
| rosa_chinensis | RchiOBHm_Chr1g0372551 |
| rosa_laevigata | RLG00000026892 |
| rosa_multiflora | Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00284860 |
| rosa_rugosa | Rorug01G0372700 |
| rosa_samantha | Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800 |
| rosa_wichuraiana | Rw1G033520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1502, 3617, 3908 |
| Acc16I | TGCGCA | 2 cut(s) | 1134, 3698 |
| Acc36I | ACCTGC | 2 cut(s) | 1553, 4136 |
| Acc65I | GGTACC | 1 cut(s) | 1752 |
| AccB1I | GGYRCC | 3 cut(s) | 1752, 3958, 4119 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1022, 1964 |
| AccI | GTMKAC | 4 cut(s) | 1868, 4204, 4382, 4960 |
| AccII | CGCG | 2 cut(s) | 1619, 3300 |
| AciI | CCGC | 9 cut(s) | 22, 26, 1841, 1861, 2584, 3298, 3417, 4670, 5053 |
| AclI | AACGTT | 1 cut(s) | 2826 |
| AclWI | GGATC | 7 cut(s) | 27, 1991, 2270, 3714, 4076, 4382, 4395 |
| AcoI | YGGCCR | 3 cut(s) | 23, 325, 1842 |
| AcuI | CTGAAG | 9 cut(s) | 225, 1409, 2583, 3203, 3459, 3834, 4014, 4326, 4950 |
| AdeI | CACNNNGTG | 1 cut(s) | 3301 |
| AfeI | AGCGCT | 3 cut(s) | 1651, 2457, 2550 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 458, 1022, 1964, 2357, 2641, 3085, 3642 |
| AflII | CTTAAG | 1 cut(s) | 569 |
| AflIII | ACRYGT | 6 cut(s) | 992, 1577, 1617, 2734, 3431, 4199 |
| AhlI | ACTAGT | 2 cut(s) | 3869, 4259 |
| AjnI | CCWGG | 3 cut(s) | 2586, 2677, 3792 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3729, 3761 |
| Alw21I | GWGCWC | 6 cut(s) | 192, 422, 1451, 2571, 2687, 4434 |
| Alw26I | GTCTC | 3 cut(s) | 787, 1595, 5002 |
| AlwI | GGATC | 7 cut(s) | 27, 1991, 2270, 3714, 4076, 4382, 4395 |
| Ama87I | CYCGRG | 1 cut(s) | 2196 |
| Aor51HI | AGCGCT | 3 cut(s) | 1651, 2457, 2550 |
| ApaI | GGGCCC | 1 cut(s) | 2862 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1148, 1180 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1030, 2673, 3051, 3372 |
| Asp718I | GGTACC | 1 cut(s) | 1752 |
| AspLEI | GCGC | 8 cut(s) | 879, 1135, 1652, 1731, 2458, 2551, 3699, 3792 |
| AsuC2I | CCSGG | 3 cut(s) | 2494, 4070, 4709 |
| AsuHPI | GGTGA | 6 cut(s) | 260, 951, 1733, 2512, 2831, 3287 |
| AsuII | TTCGAA | 1 cut(s) | 3400 |
| AsuNHI | GCTAGC | 1 cut(s) | 3854 |
| AvaI | CYCGRG | 1 cut(s) | 2196 |
| AvaII | GGWCC | 6 cut(s) | 449, 1690, 2590, 3208, 3338, 4711 |
| AxyI | CCTNAGG | 2 cut(s) | 506, 2109 |
| BaeGI | GKGCMC | 2 cut(s) | 2862, 4122 |
| BamHI | GGATCC | 1 cut(s) | 4387 |
| BanI | GGYRCC | 3 cut(s) | 1752, 3958, 4119 |
| BanII | GRGCYC | 2 cut(s) | 2687, 2862 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3828, 3860 |
| BbsI | GAAGAC | 1 cut(s) | 1161 |
| Bbv12I | GWGCWC | 6 cut(s) | 192, 422, 1451, 2571, 2687, 4434 |
| BceAI | ACGGC | 6 cut(s) | 130, 312, 864, 3946, 4642, 4979 |
| BciT130I | CCWGG | 3 cut(s) | 2588, 2679, 3794 |
| BciVI | GTATCC | 3 cut(s) | 400, 2615, 3717 |
| BclI | TGATCA | 2 cut(s) | 2728, 3259 |
| BcnI | CCSGG | 3 cut(s) | 2494, 4070, 4709 |
| BcoDI | GTCTC | 3 cut(s) | 787, 1595, 5002 |
| BcuI | ACTAGT | 2 cut(s) | 3869, 4259 |
| BfmI | CTRYAG | 2 cut(s) | 1410, 4047 |
| BfoI | RGCGCY | 5 cut(s) | 880, 1653, 1732, 2459, 2552 |
| BfrI | CTTAAG | 1 cut(s) | 569 |
| BfuAI | ACCTGC | 2 cut(s) | 1553, 4136 |
| BfuI | GTATCC | 3 cut(s) | 400, 2615, 3717 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 74 |
| BglII | AGATCT | 2 cut(s) | 3022, 4583 |
| BlpI | GCTNAGC | 1 cut(s) | 2254 |
| BmcAI | AGTACT | 1 cut(s) | 2930 |
| Bme1390I | CCNGG | 6 cut(s) | 2494, 2588, 2679, 3794, 4070, 4709 |
| Bme18I | GGWCC | 6 cut(s) | 449, 1690, 2590, 3208, 3338, 4711 |
| BmeT110I | CYCGRG | 1 cut(s) | 2196 |
| BmiI | GGNNCC | 8 cut(s) | 1754, 2592, 2860, 2861, 3960, 4121, 4389, 4712 |
| BmrFI | CCNGG | 6 cut(s) | 2494, 2588, 2679, 3794, 4070, 4709 |
| BmtI | GCTAGC | 1 cut(s) | 3858 |
| BpiI | GAAGAC | 1 cut(s) | 1161 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2108, 2140 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2459 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2254 |
| Bpu14I | TTCGAA | 1 cut(s) | 3400 |
| BpuEI | CTTGAG | 5 cut(s) | 1167, 2337, 3707, 3766, 4399 |
| BpuMI | CCSGG | 3 cut(s) | 2494, 4070, 4709 |
| BsaAI | YACGTR | 2 cut(s) | 3682, 4565 |
| BsaBI | GATNNNNATC | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 6 cut(s) | 975, 2678, 2958, 3723, 3984, 5069 |
| BsaWI | WCCGGW | 3 cut(s) | 35, 451, 928 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 458, 1022, 1964, 2357, 2641, 3085, 3642 |
| Bse1I | ACTGG | 5 cut(s) | 132, 512, 896, 2802, 3205 |
| Bse21I | CCTNAGG | 2 cut(s) | 506, 2109 |
| Bse3DI | GCAATG | 5 cut(s) | 70, 831, 3007, 3625, 4227 |
| Bse8I | GATNNNNATC | 1 cut(s) | 270 |
| BseBI | CCWGG | 3 cut(s) | 2588, 2679, 3794 |
| BseDI | CCNNGG | 6 cut(s) | 975, 2678, 2958, 3723, 3984, 5069 |
| BseJI | GATNNNNATC | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 458, 1022, 1964, 2357, 2641, 3085, 3642 |
| BseMI | GCAATG | 5 cut(s) | 70, 831, 3007, 3625, 4227 |
| BseMII | CTCAG | 6 cut(s) | 435, 849, 1464, 2123, 4928, 4992 |
| BseNI | ACTGG | 5 cut(s) | 132, 512, 896, 2802, 3205 |
| BseRI | GAGGAG | 3 cut(s) | 2097, 2129, 3299 |
| BseSI | GKGCMC | 2 cut(s) | 2862, 4122 |
| BseX3I | CGGCCG | 1 cut(s) | 23 |
| BseYI | CCCAGC | 2 cut(s) | 2862, 4900 |
| BsgI | GTGCAG | 3 cut(s) | 903, 1581, 3215 |
| Bsh1236I | CGCG | 2 cut(s) | 1619, 3300 |
| Bsh1285I | CGRYCG | 3 cut(s) | 26, 933, 4773 |
| BshNI | GGYRCC | 3 cut(s) | 1752, 3958, 4119 |
| BsiEI | CGRYCG | 3 cut(s) | 26, 933, 4773 |
| BsiHKAI | GWGCWC | 6 cut(s) | 192, 422, 1451, 2571, 2687, 4434 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2196 |
| BsiSI | CCGG | 7 cut(s) | 36, 452, 929, 2493, 4070, 4708, 4804 |
| BslFI | GGGAC | 4 cut(s) | 1909, 3392, 3436, 3662 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 458, 1022, 1964, 2357, 2641, 3085, 3642 |
| BsmAI | GTCTC | 3 cut(s) | 787, 1595, 5002 |
| BsmFI | GGGAC | 4 cut(s) | 1909, 3392, 3436, 3662 |
| BsmI | GAATGC | 2 cut(s) | 1534, 2852 |
| BsoBI | CYCGRG | 1 cut(s) | 2196 |
| Bsp119I | TTCGAA | 1 cut(s) | 3400 |
| Bsp120I | GGGCCC | 1 cut(s) | 2858 |
| Bsp1286I | GDGCHC | 8 cut(s) | 192, 422, 1451, 2571, 2687, 2862, 4122, 4434 |
| Bsp1407I | TGTACA | 1 cut(s) | 2538 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2254 |
| Bsp19I | CCATGG | 2 cut(s) | 2958, 5069 |
| BspACI | CCGC | 9 cut(s) | 22, 26, 1841, 1861, 2584, 3298, 3417, 4670, 5053 |
| BspCNI | CTCAG | 6 cut(s) | 434, 850, 1463, 2122, 4927, 4993 |
| BspFNI | CGCG | 2 cut(s) | 1619, 3300 |
| BspLI | GGNNCC | 8 cut(s) | 1754, 2592, 2860, 2861, 3960, 4121, 4389, 4712 |
| BspMI | ACCTGC | 2 cut(s) | 1553, 4136 |
| BspOI | GCTAGC | 1 cut(s) | 3858 |
| BspPI | GGATC | 7 cut(s) | 27, 1991, 2270, 3714, 4076, 4382, 4395 |
| BspQI | GCTCTTC | 1 cut(s) | 2559 |
| BspT104I | TTCGAA | 1 cut(s) | 3400 |
| BspT107I | GGYRCC | 3 cut(s) | 1752, 3958, 4119 |
| BspTI | CTTAAG | 1 cut(s) | 569 |
| BsrDI | GCAATG | 5 cut(s) | 70, 831, 3007, 3625, 4227 |
| BsrGI | TGTACA | 1 cut(s) | 2538 |
| BsrI | ACTGG | 5 cut(s) | 132, 512, 896, 2802, 3205 |
| BssECI | CCNNGG | 6 cut(s) | 975, 2678, 2958, 3723, 3984, 5069 |
| BssNAI | GTATAC | 1 cut(s) | 1869 |
| BssT1I | CCWWGG | 4 cut(s) | 975, 2958, 3723, 5069 |
| Bst1107I | GTATAC | 1 cut(s) | 1869 |
| Bst2UI | CCWGG | 3 cut(s) | 2588, 2679, 3794 |
| Bst6I | CTCTTC | 8 cut(s) | 1385, 2559, 2738, 3102, 3435, 3545, 4770, 5000 |
| BstAFI | CTTAAG | 1 cut(s) | 569 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 584, 4429 |
| BstAUI | TGTACA | 1 cut(s) | 2538 |
| BstBAI | YACGTR | 2 cut(s) | 3682, 4565 |
| BstBI | TTCGAA | 1 cut(s) | 3400 |
| BstDSI | CCRYGG | 2 cut(s) | 2958, 5069 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2355 |
| BstFNI | CGCG | 2 cut(s) | 1619, 3300 |
| BstH2I | RGCGCY | 5 cut(s) | 880, 1653, 1732, 2459, 2552 |
| BstHHI | GCGC | 8 cut(s) | 879, 1135, 1652, 1731, 2458, 2551, 3699, 3792 |
| BstMAI | GTCTC | 3 cut(s) | 787, 1595, 5002 |
| BstMCI | CGRYCG | 3 cut(s) | 26, 933, 4773 |
| BstNI | CCWGG | 3 cut(s) | 2588, 2679, 3794 |
| BstSCI | CCNGG | 6 cut(s) | 2492, 2586, 2677, 3792, 4068, 4707 |
| BstSFI | CTRYAG | 2 cut(s) | 1410, 4047 |
| BstSLI | GKGCMC | 2 cut(s) | 2862, 4122 |
| BstUI | CGCG | 2 cut(s) | 1619, 3300 |
| BstV2I | GAAGAC | 1 cut(s) | 1161 |
| BstX2I | RGATCY | 7 cut(s) | 1996, 2275, 3022, 3719, 4081, 4387, 4583 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 519, 1852, 2401, 4721 |
| BstYI | RGATCY | 7 cut(s) | 1996, 2275, 3022, 3719, 4081, 4387, 4583 |
| BstZ17I | GTATAC | 1 cut(s) | 1869 |
| BstZI | CGGCCG | 1 cut(s) | 23 |
| Bsu36I | CCTNAGG | 2 cut(s) | 506, 2109 |
| BsuI | GTATCC | 3 cut(s) | 400, 2615, 3717 |
| BtgI | CCRYGG | 2 cut(s) | 2958, 5069 |
| BtgZI | GCGATG | 1 cut(s) | 1320 |
| BtsI | GCAGTG | 3 cut(s) | 4359, 4455, 4812 |
| BveI | ACCTGC | 2 cut(s) | 1553, 4136 |
| CciNI | GCGGCCGC | 1 cut(s) | 23 |
| CfoI | GCGC | 8 cut(s) | 879, 1135, 1652, 1731, 2458, 2551, 3699, 3792 |
| CseI | GACGC | 2 cut(s) | 1608, 3847 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1396, 1431, 4163, 4198, 4546, 4581 |
| DraI | TTTAAA | 3 cut(s) | 2073, 3930, 4525 |
| DraIII | CACNNNGTG | 1 cut(s) | 3301 |
| EaeI | YGGCCR | 3 cut(s) | 23, 325, 1842 |
| EagI | CGGCCG | 1 cut(s) | 23 |
| Eam1104I | CTCTTC | 8 cut(s) | 1385, 2559, 2738, 3102, 3435, 3545, 4770, 5000 |
| EarI | CTCTTC | 8 cut(s) | 1385, 2559, 2738, 3102, 3435, 3545, 4770, 5000 |
| EciI | GGCGGA | 2 cut(s) | 2573, 3432 |
| Ecl136II | GAGCTC | 1 cut(s) | 2685 |
| EclXI | CGGCCG | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 4 cut(s) | 975, 2958, 3723, 5069 |
| Eco147I | AGGCCT | 1 cut(s) | 1373 |
| Eco24I | GRGCYC | 2 cut(s) | 2687, 2862 |
| Eco32I | GATATC | 1 cut(s) | 1633 |
| Eco47I | GGWCC | 6 cut(s) | 449, 1690, 2590, 3208, 3338, 4711 |
| Eco47III | AGCGCT | 3 cut(s) | 1651, 2457, 2550 |
| Eco52I | CGGCCG | 1 cut(s) | 23 |
| Eco53kI | GAGCTC | 1 cut(s) | 2685 |
| Eco57I | CTGAAG | 9 cut(s) | 225, 1409, 2583, 3203, 3459, 3834, 4014, 4326, 4950 |
| Eco81I | CCTNAGG | 2 cut(s) | 506, 2109 |
| Eco88I | CYCGRG | 1 cut(s) | 2196 |
| EcoICRI | GAGCTC | 1 cut(s) | 2685 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2355 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1690, 2859, 3112 |
| EcoRI | GAATTC | 2 cut(s) | 380, 3892 |
| EcoRII | CCWGG | 3 cut(s) | 2586, 2677, 3792 |
| EcoRV | GATATC | 1 cut(s) | 1633 |
| EcoT14I | CCWWGG | 4 cut(s) | 975, 2958, 3723, 5069 |
| EcoT22I | ATGCAT | 3 cut(s) | 1312, 2893, 4043 |
| EcoT38I | GRGCYC | 2 cut(s) | 2687, 2862 |
| ErhI | CCWWGG | 4 cut(s) | 975, 2958, 3723, 5069 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2658, 2690, 3039, 3071, 3099, 3131, 3903, 3935 |
| FaqI | GGGAC | 4 cut(s) | 1909, 3392, 3436, 3662 |
| FauNDI | CATATG | 4 cut(s) | 1301, 1672, 2002, 4333 |
| FbaI | TGATCA | 2 cut(s) | 2728, 3259 |
| FblI | GTMKAC | 4 cut(s) | 1868, 4204, 4382, 4960 |
| FriOI | GRGCYC | 2 cut(s) | 2687, 2862 |
| FspI | TGCGCA | 2 cut(s) | 1134, 3698 |
| GlaI | GCGC | 8 cut(s) | 878, 1134, 1651, 1730, 2457, 2550, 3698, 3791 |
| GsaI | CCCAGC | 2 cut(s) | 2866, 4904 |
| HaeII | RGCGCY | 5 cut(s) | 880, 1653, 1732, 2459, 2552 |
| HapII | CCGG | 7 cut(s) | 36, 452, 929, 2493, 4070, 4708, 4804 |
| HgaI | GACGC | 2 cut(s) | 1608, 3847 |
| HhaI | GCGC | 8 cut(s) | 879, 1135, 1652, 1731, 2458, 2551, 3699, 3792 |
| Hin6I | GCGC | 8 cut(s) | 877, 1133, 1650, 1729, 2456, 2549, 3697, 3790 |
| HinP1I | GCGC | 8 cut(s) | 877, 1133, 1650, 1729, 2456, 2549, 3697, 3790 |
| HincII | GTYRAC | 1 cut(s) | 4205 |
| HindII | GTYRAC | 1 cut(s) | 4205 |
| HindIII | AAGCTT | 4 cut(s) | 2306, 2327, 2362, 3753 |
| HpaII | CCGG | 7 cut(s) | 36, 452, 929, 2493, 4070, 4708, 4804 |
| HphI | GGTGA | 6 cut(s) | 260, 951, 1733, 2512, 2831, 3287 |
| Hpy99I | CGWCG | 5 cut(s) | 1624, 2477, 4244, 4439, 4943 |
| HpyCH4IV | ACGT | 7 cut(s) | 309, 1549, 1909, 2826, 3681, 4437, 4564 |
| HpySE526I | ACGT | 7 cut(s) | 309, 1549, 1909, 2826, 3681, 4437, 4564 |
| HspAI | GCGC | 8 cut(s) | 877, 1133, 1650, 1729, 2456, 2549, 3697, 3790 |
| KpnI | GGTACC | 1 cut(s) | 1756 |
| Ksp22I | TGATCA | 2 cut(s) | 2728, 3259 |
| LguI | GCTCTTC | 1 cut(s) | 2559 |
| LmnI | GCTCC | 9 cut(s) | 1228, 1250, 1530, 2098, 2682, 3589, 4444, 4619, 5017 |
| MaeII | ACGT | 7 cut(s) | 309, 1549, 1909, 2826, 3681, 4437, 4564 |
| MflI | RGATCY | 7 cut(s) | 1996, 2275, 3022, 3719, 4081, 4387, 4583 |
| MhlI | GDGCHC | 8 cut(s) | 192, 422, 1451, 2571, 2687, 2862, 4122, 4434 |
| MluI | ACGCGT | 1 cut(s) | 1617 |
| MlyI | GAGTC | 5 cut(s) | 64, 702, 1697, 1891, 3551 |
| MmeI | TCCRAC | 6 cut(s) | 422, 1602, 2076, 3024, 4037, 4201 |
| Mph1103I | ATGCAT | 3 cut(s) | 1312, 2893, 4043 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1030, 2673, 3051, 3372 |
| MslI | CAYNNNNRTG | 6 cut(s) | 964, 1557, 1719, 1850, 2399, 4215 |
| MspA1I | CMGCKG | 3 cut(s) | 1343, 1444, 5000 |
| MspCI | CTTAAG | 1 cut(s) | 569 |
| MspI | CCGG | 7 cut(s) | 36, 452, 929, 2493, 4070, 4708, 4804 |
| MspR9I | CCNGG | 6 cut(s) | 2494, 2588, 2679, 3794, 4070, 4709 |
| Mva1269I | GAATGC | 2 cut(s) | 1534, 2852 |
| MvaI | CCWGG | 3 cut(s) | 2588, 2679, 3794 |
| MvnI | CGCG | 2 cut(s) | 1619, 3300 |
| NciI | CCSGG | 3 cut(s) | 2494, 4070, 4709 |
| NcoI | CCATGG | 2 cut(s) | 2958, 5069 |
| NdeI | CATATG | 4 cut(s) | 1301, 1672, 2002, 4333 |
| NheI | GCTAGC | 1 cut(s) | 3854 |
| NlaIV | GGNNCC | 8 cut(s) | 1754, 2592, 2860, 2861, 3960, 4121, 4389, 4712 |
| NmuCI | GTSAC | 8 cut(s) | 547, 594, 1295, 1695, 2242, 2909, 3872, 4354 |
| NotI | GCGGCCGC | 1 cut(s) | 23 |
| NsbI | TGCGCA | 2 cut(s) | 1134, 3698 |
| NsiI | ATGCAT | 3 cut(s) | 1312, 2893, 4043 |
| NspV | TTCGAA | 1 cut(s) | 3400 |
| PaeI | GCATGC | 3 cut(s) | 1956, 3697, 4451 |
| PceI | AGGCCT | 1 cut(s) | 1373 |
| PciI | ACATGT | 5 cut(s) | 992, 1577, 2734, 3431, 4199 |
| PciSI | GCTCTTC | 1 cut(s) | 2559 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1555 |
| PctI | GAATGC | 2 cut(s) | 1534, 2852 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1030, 2673, 3051, 3372 |
| PflFI | GACNNNGTC | 1 cut(s) | 4769 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1022, 1964 |
| PleI | GAGTC | 5 cut(s) | 63, 701, 1697, 1891, 3550 |
| PpsI | GAGTC | 5 cut(s) | 63, 701, 1697, 1891, 3550 |
| Ppu21I | YACGTR | 2 cut(s) | 3682, 4565 |
| PpuMI | RGGWCCY | 1 cut(s) | 1690 |
| PscI | ACATGT | 5 cut(s) | 992, 1577, 2734, 3431, 4199 |
| PsiI | TTATAA | 3 cut(s) | 1502, 3617, 3908 |
| Psp124BI | GAGCTC | 1 cut(s) | 2687 |
| Psp1406I | AACGTT | 1 cut(s) | 2826 |
| Psp5II | RGGWCCY | 1 cut(s) | 1690 |
| Psp6I | CCWGG | 3 cut(s) | 2586, 2677, 3792 |
| PspFI | CCCAGC | 2 cut(s) | 2862, 4900 |
| PspGI | CCWGG | 3 cut(s) | 2586, 2677, 3792 |
| PspN4I | GGNNCC | 8 cut(s) | 1754, 2592, 2860, 2861, 3960, 4121, 4389, 4712 |
| PspOMI | GGGCCC | 1 cut(s) | 2858 |
| PspPPI | RGGWCCY | 1 cut(s) | 1690 |
| PsuI | RGATCY | 7 cut(s) | 1996, 2275, 3022, 3719, 4081, 4387, 4583 |
| PsyI | GACNNNGTC | 1 cut(s) | 4769 |
| PvuII | CAGCTG | 3 cut(s) | 1343, 1444, 5000 |
| RseI | CAYNNNNRTG | 6 cut(s) | 964, 1557, 1719, 1850, 2399, 4215 |
| SacI | GAGCTC | 1 cut(s) | 2687 |
| SalI | GTCGAC | 1 cut(s) | 4203 |
| SapI | GCTCTTC | 1 cut(s) | 2559 |
| ScaI | AGTACT | 1 cut(s) | 2930 |
| SchI | GAGTC | 5 cut(s) | 64, 702, 1697, 1891, 3551 |
| ScrFI | CCNGG | 6 cut(s) | 2494, 2588, 2679, 3794, 4070, 4709 |
| SduI | GDGCHC | 8 cut(s) | 192, 422, 1451, 2571, 2687, 2862, 4122, 4434 |
| SfcI | CTRYAG | 2 cut(s) | 1410, 4047 |
| SfuI | TTCGAA | 1 cut(s) | 3400 |
| SinI | GGWCC | 6 cut(s) | 449, 1690, 2590, 3208, 3338, 4711 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 964, 1557, 1719, 1850, 2399, 4215 |
| SmlI | CTYRAG | 6 cut(s) | 569, 1182, 2352, 3686, 3781, 4414 |
| SmoI | CTYRAG | 6 cut(s) | 569, 1182, 2352, 3686, 3781, 4414 |
| SpeI | ACTAGT | 2 cut(s) | 3869, 4259 |
| SphI | GCATGC | 3 cut(s) | 1956, 3697, 4451 |
| SseBI | AGGCCT | 1 cut(s) | 1373 |
| SsiI | CCGC | 9 cut(s) | 22, 26, 1841, 1861, 2584, 3298, 3417, 4670, 5053 |
| SspI | AATATT | 2 cut(s) | 1785, 2917 |
| SstI | GAGCTC | 1 cut(s) | 2687 |
| StuI | AGGCCT | 1 cut(s) | 1373 |
| StyD4I | CCNGG | 6 cut(s) | 2492, 2586, 2677, 3792, 4068, 4707 |
| StyI | CCWWGG | 4 cut(s) | 975, 2958, 3723, 5069 |
| TaiI | ACGT | 7 cut(s) | 312, 1552, 1912, 2829, 3684, 4440, 4567 |
| TaqII | GACCGA | 1 cut(s) | 156 |
| TatI | WGTACW | 4 cut(s) | 2538, 2928, 3029, 4262 |
| TauI | GCSGC | 5 cut(s) | 25, 28, 1844, 4672, 5056 |
| TseFI | GTSAC | 8 cut(s) | 547, 594, 1295, 1695, 2242, 2909, 3872, 4354 |
| Tsp45I | GTSAC | 8 cut(s) | 547, 594, 1295, 1695, 2242, 2909, 3872, 4354 |
| TspGWI | ACGGA | 4 cut(s) | 4101, 4174, 4400, 4967 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4769 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1022, 1964 |
| Vha464I | CTTAAG | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 6 cut(s) | 449, 1690, 2590, 3208, 3338, 4711 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2355 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4099 |
| XmiI | GTMKAC | 4 cut(s) | 1868, 4204, 4382, 4960 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1030, 2673, 3051, 3372 |
| ZrmI | AGTACT | 1 cut(s) | 2930 |
| Zsp2I | ATGCAT | 3 cut(s) | 1312, 2893, 4043 |