Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003903

Physical Location & Seq

Genomic Coordinates Reverse (-)

61296259 .. 61306483

Gene Structure 10225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG381200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5049 bp

ATGTTTGTGTTGGAATTGTGGTTTGAGATGTATAGGATGGGTAGAAGGAAGCAAAGCCGGCCTCACCGGTCAGGTGGGATTGTATTAGAGAGTCAAGCAACTGCCGGCAGGGGAGAATTGGATGAGGGGAGGCTTTTAAATGGAGAAACGCAAAAGAATGACATAGATGAAGTTGATAGACCGTATTTTGTGGAAGTTGATCGGTCTAATTGGGGATCAGATGAGCACCTTGATATTGCTGAAGTGGTTTTAACAGATTTGACCTTCAGAGAAGGGTTTTGCAGTGATGTTTTTAGTGGGGGTTTGAATTGCGATAGTTACTCCTTAAGGTTCCGGTTATCTAATGTAAAGGAGTTCATTGGTCGTATTAAGCTTGGTCATTGGCCTTTGTTGTCCTCTGCTGATATATCTTTGGAATTCGTTAAAACATGTTCAAGCGAGTATATGGACATGGACAAGGACACCTGCTCAGTAATCTTGTCAGGGAGTTTTGATGGACCAGATGAAGGTATTTCTGGTCTGGTACACTTGGCAAGTTTGAAGTTTATGACACTGAGGCCAGCTCTGTCCATTGGGTTTGTGAATGATACGTCAAACATCAGGGTCAGGGTGGAGATACTTAAGAGTGCATTTAATGCTTGTGAGTCACTTCTTGACAATACTAGGCAAGTGTGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACACCCAGAAGTAGTGACTTCCGAGGCTAGGTATGGAGACAGTAGATCAACAGACATGGAGATTGATTCGCATACTGACACTGGACATGCTAATTCCAATCATAGTAAACATGCAAGGTTTGATGTTGCTGGGTTCTATGAAGCCATTAAACCCTCAAAAGCAGATACAATGCTTCAAGATGTCCTGCCTGATTTGCTTCCTGAATTGAAACCATATCAACGCCGTGCAGCTTACTGGATGGTACAGAGGGAGAAAAGCGATGCACAAAGTCTGGCCCAAGAGGCCACAAGTCAGTTCATGTCGCCCTTATGTTTGCCCTTGCAATTTCTCGACAGATGTTCAAAAATGTTCTACAACCCATTCAGTGGAAATGTTTCGCTGCACCAAGAGCATTTTTCAACGTACGTCTCTGGTGGTATTCTTGCTGATGAGATGGGCATGGGGAAAACTGTTGAACTTCTCGCCTGCATCTTTGCTCATCAGAAGTCAGCAGATGAAGACCCCATATTTGCTGATGCTGAAATTCAAGATACTGAGGATCTGAAAATAAAGCTTAAAAGATTAAAAAGGGAGCGAGTTGAATGTATATGTGGAGCTGTGAGTGAAAGTATCAGATACAGAGGACTATGGGTACAGTGCGACATATGTGATGCATGGCAACATGCTGATTGTGTGGGCTATTCACCTAGAGGAAAGACTATAAAATCCAACGAGACTTCTAACGAAAAAGAACATGATAAGAGTTCGGTGGTTAAGAATTATACTAGAAAGAAGAATACAGCCACAATAGATGTGAGAGATGAGGAATATATATGCCAGCTGTGCTCAGAACTGATACAGGCCACTACTTCTCCTGTTGCTACTGGTGCCACTCTTATAATCTGTCCAGCTTCTATATTGCCCCAGTGGTATTCTGAAATTATGCGCCATACGCGTTCAGGTTCTTTAAAGACTTGCGTCTATGAAGGTGTAAGAGAGGCATCTTTTTCAAACACATCTGTAATTGATATCAGTGAACTCATCAGTGCTGACATTGTGTTGACAACATATGATGTGCTTAAAGCGGACCTGTCACATGACTCTGATAGGCATGAAGGTGATCGACGCTTAATGAGATTCCAAAAGAGATATCCTGTTGTTCCAACTATTCTTACCAGAATATTCTGGTGGAGAATTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGCTGGTGCTGCAACAGAAATGGCTATGCGACTGTATGCGAAGCATCGTTGGTGCATAACGGGGACTCCTATACAACGTAAACTTGATGACTTGTATGGACTTCTACGGTTTCTTAAAGCATGCCCTTTCAATGCTTCCAGGTGGTGGATTGAAGTTATACGAGATCCATATGAGAGGAGAGATGCAGGAGCTATGGAATTTACACATAAATTCTTTAAAGAAATCATGTGGCGATCTTCAAAGGTGCATGTTGCAGATGAGTTGCAGCTTCCACCTCAGGAAGAATGTCTCTCTTGGCTCACTTTATCTCCAGTTGAAGAGCATTTTTACCAGAGGCAACATGAAACTTGTGTGAGTTATGCCCGAGAAGTCATTGAACATATGAAAGATGATATTATGAAGAGAAAAGTCAGAGGATGCTCAGCAGCTAAATCATCAGATTCTTTCATCACACATGCGGAGGCAGGAAAGCTGCTGAACACACTTTTGAAGCTTCGCCAAGCCAGCTGTCACCCTCAAGTAGGAAGCTCAGGACTGCGTTCTCTCCAACAGTCTCCCATGACTATGGAGGAAATATTAATGGTTCTTGTAAGTAAAACCAAGATAGAAGGAGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTTAATGGGCTCGCTGGGATAGCTGTAATTGAGCAAAATTTTACTCAAGCTGTATCACTGTATAAGGAATCGTTGACTTTAGCTGAAGAGCACACTGAGGATTTCCGCCTGGATCCTTTGTTGAATATTCACATTCATCATAATCTTGCCGAAATACTTCCATTATCAACAAGCTGCTCCCCTTCAAAAGGACAACATATTCCTGGAAAAATGGGCCCCTGTGATGAACATGTAGCAAAGAGGCGAAAACTGGGTGGGGAAGATAACTCATCAGAGAATGACTTATCTAATGCTCAAGAATATAATAACTCCCATGCATCATGTAGTTCCTTCACTGACGTATCTTTGAGAACAGTCTGTGACAATCTTAAACAAAAGTACTTATCTGCATTCAGTTCAAAGTTATTCATGACTCAGCAAGAGTTTAAGAAGTCTTACACCCAGGTTTGTAGCACAATTAGTGAGATCAAAGATGTAAGTACAGTCTGGTGGCTGGAAGCCCTTCTTCATGCTGAAAAGAATAATGACATTTCTAGTCTGTTGATCAGAAAGATTGAAGAGGCGCTCATAGGAACTCTAAACAATTCAAAGTCATCTAGAATTCCATCTCGTTTACGAAGCATAAGCGCTCTAAAGTATCACATGCAGACCGGTTTGGACCAACTAGAAGAATCTAGGAAACTGTTACTTGATCGACTTTTAGAAATTGATCAGACAATGGAAAAGCCAAAAGAGGAGGATATCCAGCGTGTGAGATACTGTCGAAATTGCAAAGCTAATGATGGTGGTCCCTTATGTGTTCTTTGTGGAGTAGATGAATTATTTCGGGGATATGAAGCAAGGCTCTTTCGTCTTGAGAAAATATCTGGAGGGATTGCTACCTCTGCTGAAGAGGCTGTGGATTTGCAGAAGAAGAACTCTGAACTTAATCGTTTCTATCAGAATTTATCACAGCCAATTAAGGATTCAACGTCACCCAAATCTAATCAAGAATCGAAGAAGAGAGATGTTGGAAAAGTTGTGGTTTCAAAATCCCCATCTGAATTAGAGGTTGTTCTTGGAGTTATAAAAAGCCATTGCAAGGCCCATTTTGGAAAGGAAGGTATATCAGAAGCTACCAAGCACCTACACATTCTTGAGGGCATGCGCAAGGAGTATGGCCATGCAAGATCCTTGGCAATAGCTCAAGCTCAGATTCTGCAAGCTTATGATGAAATTAATATGGCAACTACAAGGTTGCGCCTGAGTGAAGATGAGAATGATAAATCTCTTGATGTATTAAGTGAAGATGAATTACCTTCAGCTAACGTTTTATACACCAGTGAAAAGTTCGCATCCTTGAGCTTGTTGTCTTGTATAAAAGGGAAGCTTCGTTATTTGAAGGGTTTGGTAGAAGCTAAACAAAAAATGCCATTTGGATGTCCAAATCATTCCTCAGTAACTGGAGAGGAAGCCACCATATCGACTTCTACAGAACAGAGAAATGAATGTGTACCTACAGGTGATAAAGAAACGTGCCCAGTTTGTCAAGAACAGTTAACCATTCAAAAGATGGTTTTCCCTTGTGGACATCTTACTTGCTGTAAATGTTTATTTGCAATTACTGAGAGACTACTAAATGGGAAAAAGGTTCAAGATAAGTGGGTAAAATGCCCAACATGTCGACAGCACACTGATGTTGCAAATATTGCTTTTGCTGATGATGGACAAAGTGAATCTTGTGGTTCTGCTGGGCTTCATGCAATCCAAAGTCGTGAAGAGTGTGAAGCATCTATTATAGTTCAAGGTTCATATGGAACAAAGATTGAAGCAGTTACAAGAAGAATTCTGTGGATAAAGTCTACCGATCCAGAGGCTAAAGTTCTTGTTTTCTCAAGCTGGAATGATGTCCTTGACGTATTGGAGCATGCCTTCATTGCTAATGGCATTACCTCTATAAGGATGAAAGGAGGAAGGAAATCACAAGTTGCCATTAGTGAATTTAAAGGAGAAAAGAGAAGCTTAACAGGAAATCACAAGTTGCATGGCCGAAACCCAGAAGGAAGATCTATTCAAGTGTTGCTGCTCTTAATTCAACATGGAGCGAATGGCCTCAATCTGTTGGAAGCGAAGCATGTTATTCTTGTTGAGCCGCTTCTCAATCCAGCAGCAGAAGCACAAGCCATCGGCAGGGTACACCGTATCGGACAGAAAAATAAGACCCTCGCTCATCGTTTCATAGTTAAAGGCACGGTTGAAGAGAGCATATACAAGCTCAACAAAAGCAGGAACAGCACTGCCTTCATTAGTGGTAACACAAAAAACCAAGATCAGCCCTTATTGACACTGAAAGACATTGAGGCCTTATTTTCAACAGTGCCATCATTACCTGTACCAGAGACTGATGTAAGGCCAACTGAAAGTGAAACTCTAAGACATTTGCCACCTTCTGTGGCTGCTGCCATTGCAGCTGAGAAGCGGCTCAAGGAGCAGCATTCATGTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C PHD SNF2_N zf-C3HC4

Protein Analysis

1682

Amino Acids

189.09

Weight (kDa)

6.47

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	308 - 812	1.9e-63	SNF2-related domain
SHPRH_helical-1st	PF21325	828 - 907	2.8e-24	E3 ubiquitin-protein ligase SHPRH, first helical domain
SHPRH_helical-2nd	PF21324	1014 - 1138	1.3e-06	E3 ubiquitin-protein ligase SHPRH, second helical domain
Helicase_C	PF00271	1456 - 1582	1.2e-07	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40770 AT2G40770 AT2G40770
fragaria_vesca	FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110
malus_domestica	MD01G1169300.v1.1
prunus_persica	Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1
pyrus_communis	pycom01g18200
rosa_chinensis	RchiOBHm_Chr1g0372551
rosa_laevigata	RLG00000026892
rosa_multiflora	Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284860
rosa_rugosa	Rorug01G0372700
rosa_samantha	Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800
rosa_wichuraiana	Rw1G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1586, 3626
AarI	CACCTGC	1 cut(s)	473
Acc16I	TGCGCA	1 cut(s)	3707
Acc36I	ACCTGC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	1574
AccB7I	CCANNNNNTGG	2 cut(s)	1073, 2061
AccI	GTMKAC	2 cut(s)	4222, 4400
AccII	CGCG	1 cut(s)	1642
AciI	CCGC	5 cut(s)	1772, 2375, 2665, 4691, 5017
AclI	AACGTT	1 cut(s)	3867
AclWI	GGATC	7 cut(s)	223, 1254, 2075, 2666, 2679, 3723, 4400
AcoI	YGGCCR	2 cut(s)	3718, 4585
AcuI	CTGAAG	5 cut(s)	250, 261, 2664, 3468, 3843
AfaI	GTAC	9 cut(s)	525, 951, 1112, 1341, 2939, 3040, 4053, 4734, 4932
AfeI	AGCGCT	1 cut(s)	3187
AfiI	CCNNNNNNNGG	9 cut(s)	506, 735, 1073, 2061, 2438, 2747, 3640, 4497, 4728
AflII	CTTAAG	2 cut(s)	325, 620
AflIII	ACRYGT	4 cut(s)	428, 1640, 2788, 4217
AgeI	ACCGGT	2 cut(s)	66, 3209
AjnI	CCWGG	4 cut(s)	2054, 2667, 2761, 3000
AjuI	GAANNNNNNNTTGG	2 cut(s)	3508, 3540
Alw21I	GWGCWC	3 cut(s)	228, 1535, 2652
Alw26I	GTCTC	7 cut(s)	738, 1120, 1415, 2210, 2475, 4162, 4931
AlwI	GGATC	7 cut(s)	223, 1254, 2075, 2666, 2679, 3723, 4400
AlwNI	CAGNNNCTG	3 cut(s)	3757, 4001, 4940
Ama87I	CYCGRG	1 cut(s)	2280
Aor51HI	AGCGCT	1 cut(s)	3187
ApaI	GGGCCC	1 cut(s)	2777
ArsI	GACNNNNNNTTYG	2 cut(s)	1199, 1231
AseI	ATTAAT	2 cut(s)	2495, 3777
AsiGI	ACCGGT	2 cut(s)	66, 3209
Asp700I	GAANNNNTTC	4 cut(s)	1081, 2715, 3060, 3381
AspLEI	GCGC	5 cut(s)	1635, 3124, 3188, 3708, 3801
AspS9I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3217, 3347, 3643
AsuHPI	GGTGA	6 cut(s)	56, 1383, 1817, 2420, 3525, 4073
AvaI	CYCGRG	1 cut(s)	2280
AvaII	GGWCC	4 cut(s)	497, 1774, 3217, 3347
AxyI	CCTNAGG	1 cut(s)	2193
BaeGI	GKGCMC	2 cut(s)	2777, 4079
BaeI	ACNNNNGTAYC	2 cut(s)	2883, 2916
BalI	TGGCCA	1 cut(s)	3720
BamHI	GGATCC	1 cut(s)	2671
BanI	GGYRCC	1 cut(s)	1574
BanII	GRGCYC	2 cut(s)	2571, 2777
BarI	GAAGNNNNNNTAC	2 cut(s)	3837, 3869
BbsI	GAAGAC	1 cut(s)	1212
Bbv12I	GWGCWC	3 cut(s)	228, 1535, 2652
BceAI	ACGGC	1 cut(s)	915
BciT130I	CCWGG	4 cut(s)	2056, 2669, 2763, 3002
BclI	TGATCA	2 cut(s)	3102, 3268
BcoDI	GTCTC	7 cut(s)	738, 1120, 1415, 2210, 2475, 4162, 4931
BfaI	CTAG	8 cut(s)	663, 735, 1395, 1473, 3093, 3156, 3224, 3234
BfmI	CTRYAG	2 cut(s)	4029, 4056
BfoI	RGCGCY	2 cut(s)	3125, 3189
BfrI	CTTAAG	2 cut(s)	325, 620
BfuAI	ACCTGC	1 cut(s)	473
BglI	GCCNNNNNGGC	1 cut(s)	989
BglII	AGATCT	1 cut(s)	4604
BlpI	GCTNAGC	1 cut(s)	2338
BmcAI	AGTACT	1 cut(s)	2939
Bme1390I	CCNGG	4 cut(s)	2056, 2669, 2763, 3002
Bme18I	GGWCC	4 cut(s)	497, 1774, 3217, 3347
BmeT110I	CYCGRG	1 cut(s)	2280
BmgT120I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3217, 3347, 3643
BmiI	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3349
BmrFI	CCNGG	4 cut(s)	2056, 2669, 2763, 3002
BmrI	ACTGGG	3 cut(s)	1606, 2819, 4073
BmuI	ACTGGG	3 cut(s)	1606, 2819, 4073
BoxI	GACNNNNGTC	1 cut(s)	1664
BpiI	GAAGAC	1 cut(s)	1212
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BpmI	CTGGAG	3 cut(s)	2211, 3447, 4023
Bpu10I	CCTNAGC	1 cut(s)	2446
Bpu1102I	GCTNAGC	1 cut(s)	2338
BpuEI	CTTGAG	9 cut(s)	2418, 2589, 2838, 3434, 3716, 3729, 3919, 4417, 5006
BsaJI	CCNNGG	3 cut(s)	729, 3000, 3732
BsaWI	WCCGGW	3 cut(s)	66, 333, 3209
BsaXI	ACNNNNNCTCC	8 cut(s)	1543, 1573, 1870, 1900, 1966, 1996, 2209, 2239
Bsc4I	CCNNNNNNNGG	9 cut(s)	506, 735, 1073, 2061, 2438, 2747, 3640, 4497, 4728
Bse118I	RCCGGY	4 cut(s)	57, 66, 104, 3209
Bse1I	ACTGG	9 cut(s)	793, 947, 1576, 1612, 2228, 2814, 3879, 4006, 4079
Bse21I	CCTNAGG	1 cut(s)	2193
Bse3DI	GCAATG	3 cut(s)	3634, 4473, 5001
BseBI	CCWGG	4 cut(s)	2056, 2669, 2763, 3002
BseDI	CCNNGG	3 cut(s)	729, 3000, 3732
BseGI	GGATG	8 cut(s)	42, 127, 951, 1897, 2339, 3893, 3983, 4506
BseLI	CCNNNNNNNGG	9 cut(s)	506, 735, 1073, 2061, 2438, 2747, 3640, 4497, 4728
BseMI	GCAATG	3 cut(s)	3634, 4473, 5001
BseNI	ACTGG	9 cut(s)	793, 947, 1576, 1612, 2228, 2814, 3879, 4006, 4079
BseRI	GAGGAG	2 cut(s)	2107, 3308
BseSI	GKGCMC	2 cut(s)	2777, 4079
BseYI	CCCAGC	3 cut(s)	836, 2573, 4289
BsgI	GTGCAG	2 cut(s)	954, 1073
Bsh1236I	CGCG	1 cut(s)	1642
BshNI	GGYRCC	1 cut(s)	1574
BshTI	ACCGGT	2 cut(s)	66, 3209
BsiHKAI	GWGCWC	3 cut(s)	228, 1535, 2652
BsiHKCI	CYCGRG	1 cut(s)	2280
BsiSI	CCGG	5 cut(s)	58, 67, 105, 334, 3210
BsiWI	CGTACG	1 cut(s)	1110
BslFI	GGGAC	2 cut(s)	1993, 3333
BslI	CCNNNNNNNGG	9 cut(s)	506, 735, 1073, 2061, 2438, 2747, 3640, 4497, 4728
BsmAI	GTCTC	7 cut(s)	738, 1120, 1415, 2210, 2475, 4162, 4931
BsmBI	CGTCTC	1 cut(s)	1120
BsmFI	GGGAC	2 cut(s)	1993, 3333
BsmI	GAATGC	2 cut(s)	2948, 5032
BsoBI	CYCGRG	1 cut(s)	2280
Bsp120I	GGGCCC	1 cut(s)	2773
Bsp1286I	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
Bsp1720I	GCTNAGC	1 cut(s)	2338
BspACI	CCGC	5 cut(s)	1772, 2375, 2665, 4691, 5017
BspFNI	CGCG	1 cut(s)	1642
BspHI	TCATGA	2 cut(s)	2967, 5045
BspLI	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3349
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	7 cut(s)	223, 1254, 2075, 2666, 2679, 3723, 4400
BspQI	GCTCTTC	2 cut(s)	2229, 2640
BspT107I	GGYRCC	1 cut(s)	1574
BspTI	CTTAAG	2 cut(s)	325, 620
BsrDI	GCAATG	3 cut(s)	3634, 4473, 5001
BsrFI	RCCGGY	4 cut(s)	57, 66, 104, 3209
BsrI	ACTGG	9 cut(s)	793, 947, 1576, 1612, 2228, 2814, 3879, 4006, 4079
BssAI	RCCGGY	4 cut(s)	57, 66, 104, 3209
BssECI	CCNNGG	3 cut(s)	729, 3000, 3732
BssT1I	CCWWGG	1 cut(s)	3732
Bst2UI	CCWGG	4 cut(s)	2056, 2669, 2763, 3002
Bst6I	CTCTTC	8 cut(s)	2229, 2312, 2640, 3111, 3444, 3554, 4311, 4791
BstAFI	CTTAAG	2 cut(s)	325, 620
BstAPI	GCANNNNNTGC	2 cut(s)	635, 4247
BstENI	CCTNNNNNAGG	3 cut(s)	2436, 2745, 4495
BstF5I	GGATG	8 cut(s)	42, 127, 951, 1897, 2339, 3893, 3983, 4506
BstFNI	CGCG	1 cut(s)	1642
BstH2I	RGCGCY	2 cut(s)	3125, 3189
BstHHI	GCGC	5 cut(s)	1635, 3124, 3188, 3708, 3801
BstMAI	GTCTC	7 cut(s)	738, 1120, 1415, 2210, 2475, 4162, 4931
BstNI	CCWGG	4 cut(s)	2056, 2669, 2763, 3002
BstPAI	GACNNNNGTC	1 cut(s)	1664
BstSCI	CCNGG	4 cut(s)	2054, 2667, 2761, 3000
BstSFI	CTRYAG	2 cut(s)	4029, 4056
BstSLI	GKGCMC	2 cut(s)	2777, 4079
BstUI	CGCG	1 cut(s)	1642
BstV2I	GAAGAC	1 cut(s)	1212
BstX2I	RGATCY	5 cut(s)	1246, 2080, 2671, 3728, 4604
BstXI	CCANNNNNNTGG	1 cut(s)	2482
BstYI	RGATCY	5 cut(s)	1246, 2080, 2671, 3728, 4604
Bsu36I	CCTNAGG	1 cut(s)	2193
BtgZI	GCGATG	1 cut(s)	981
BtsCI	GGATG	8 cut(s)	42, 127, 951, 1897, 2339, 3893, 3983, 4506
BtsI	GCAGTG	2 cut(s)	289, 4833
BveI	ACCTGC	1 cut(s)	473
CaiI	CAGNNNCTG	3 cut(s)	3757, 4001, 4940
CciI	TCATGA	2 cut(s)	2967, 5045
CfoI	GCGC	5 cut(s)	1635, 3124, 3188, 3708, 3801
Cfr10I	RCCGGY	4 cut(s)	57, 66, 104, 3209
Cfr13I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3217, 3347, 3643
CseI	GACGC	2 cut(s)	1654, 1821
Csp6I	GTAC	9 cut(s)	524, 950, 1111, 1340, 2938, 3039, 4052, 4733, 4931
CspAI	ACCGGT	2 cut(s)	66, 3209
CspCI	CAANNNNNGTGG	2 cut(s)	4181, 4216
CviQI	GTAC	9 cut(s)	524, 950, 1111, 1340, 2938, 3039, 4052, 4733, 4931
DraI	TTTAAA	4 cut(s)	138, 1656, 2134, 4543
EaeI	YGGCCR	2 cut(s)	3718, 4585
Eam1104I	CTCTTC	8 cut(s)	2229, 2312, 2640, 3111, 3444, 3554, 4311, 4791
EarI	CTCTTC	8 cut(s)	2229, 2312, 2640, 3111, 3444, 3554, 4311, 4791
EciI	GGCGGA	1 cut(s)	2654
Eco130I	CCWWGG	1 cut(s)	3732
Eco147I	AGGCCT	1 cut(s)	4901
Eco24I	GRGCYC	2 cut(s)	2571, 2777
Eco32I	GATATC	3 cut(s)	1717, 1838, 3301
Eco47I	GGWCC	4 cut(s)	497, 1774, 3217, 3347
Eco47III	AGCGCT	1 cut(s)	3187
Eco57I	CTGAAG	5 cut(s)	250, 261, 2664, 3468, 3843
Eco81I	CCTNAGG	1 cut(s)	2193
Eco88I	CYCGRG	1 cut(s)	2280
EcoNI	CCTNNNNNAGG	3 cut(s)	2436, 2745, 4495
EcoO109I	RGGNCCY	1 cut(s)	2774
EcoRI	GAATTC	3 cut(s)	416, 3159, 4383
EcoRII	CCWGG	4 cut(s)	2054, 2667, 2761, 3000
EcoRV	GATATC	3 cut(s)	1717, 1838, 3301
EcoT14I	CCWWGG	1 cut(s)	3732
EcoT22I	ATGCAT	2 cut(s)	1363, 2878
EcoT38I	GRGCYC	2 cut(s)	2571, 2777
ErhI	CCWWGG	1 cut(s)	3732
Esp3I	CGTCTC	1 cut(s)	1120
FalI	AAGNNNNNCTT	8 cut(s)	3048, 3080, 3912, 3944, 4261, 4293, 4544, 4576
FaqI	GGGAC	2 cut(s)	1993, 3333
FauNDI	CATATG	5 cut(s)	1352, 1756, 2086, 2298, 4351
FbaI	TGATCA	2 cut(s)	3102, 3268
FblI	GTMKAC	2 cut(s)	4222, 4400
FokI	GGATG	8 cut(s)	49, 134, 958, 1904, 2346, 3880, 3990, 4513
FriOI	GRGCYC	2 cut(s)	2571, 2777
FspBI	CTAG	8 cut(s)	663, 735, 1395, 1473, 3093, 3156, 3224, 3234
FspI	TGCGCA	1 cut(s)	3707
GlaI	GCGC	5 cut(s)	1634, 3123, 3187, 3707, 3800
GsaI	CCCAGC	3 cut(s)	840, 2577, 4293
GsuI	CTGGAG	3 cut(s)	2211, 3447, 4023
HaeII	RGCGCY	2 cut(s)	3125, 3189
HapII	CCGG	5 cut(s)	58, 67, 105, 334, 3210
HgaI	GACGC	2 cut(s)	1654, 1821
HhaI	GCGC	5 cut(s)	1635, 3124, 3188, 3708, 3801
Hin6I	GCGC	5 cut(s)	1633, 3122, 3186, 3706, 3799
HinP1I	GCGC	5 cut(s)	1633, 3122, 3186, 3706, 3799
HincII	GTYRAC	4 cut(s)	1749, 2634, 4098, 4223
HindII	GTYRAC	4 cut(s)	1749, 2634, 4098, 4223
HindIII	AAGCTT	6 cut(s)	371, 1259, 2408, 3762, 3926, 4558
HpaI	GTTAAC	1 cut(s)	4098
HpaII	CCGG	5 cut(s)	58, 67, 105, 334, 3210
HphI	GGTGA	6 cut(s)	56, 1383, 1817, 2420, 3525, 4073
Hpy99I	CGWCG	1 cut(s)	1815
HpyCH4IV	ACGT	9 cut(s)	590, 1109, 1113, 1993, 2898, 3530, 3867, 4073, 4455
HpySE526I	ACGT	9 cut(s)	590, 1109, 1113, 1993, 2898, 3530, 3867, 4073, 4455
HspAI	GCGC	5 cut(s)	1633, 3122, 3186, 3706, 3799
KroI	GCCGGC	2 cut(s)	57, 104
KroNI	GCCGGC	2 cut(s)	59, 106
Ksp22I	TGATCA	2 cut(s)	3102, 3268
KspAI	GTTAAC	1 cut(s)	4098
LguI	GCTCTTC	2 cut(s)	2229, 2640
LmnI	GCTCC	7 cut(s)	1279, 1301, 2105, 2741, 4462, 4640, 5026
MaeI	CTAG	8 cut(s)	663, 735, 1395, 1473, 3093, 3156, 3224, 3234
MaeII	ACGT	9 cut(s)	590, 1109, 1113, 1993, 2898, 3530, 3867, 4073, 4455
MflI	RGATCY	5 cut(s)	1246, 2080, 2671, 3728, 4604
MhlI	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
MlsI	TGGCCA	1 cut(s)	3720
MluI	ACGCGT	1 cut(s)	1640
MluNI	TGGCCA	1 cut(s)	3720
MlyI	GAGTC	5 cut(s)	100, 653, 1781, 1975, 2965
MmeI	TCCRAC	5 cut(s)	1440, 1874, 2488, 3550, 4641
Mox20I	TGGCCA	1 cut(s)	3720
Mph1103I	ATGCAT	2 cut(s)	1363, 2878
MroNI	GCCGGC	2 cut(s)	57, 104
MroXI	GAANNNNTTC	4 cut(s)	1081, 2715, 3060, 3381
MscI	TGGCCA	1 cut(s)	3720
MslI	CAYNNNNRTG	4 cut(s)	1803, 2480, 3976, 4233
Msp20I	TGGCCA	1 cut(s)	3720
MspA1I	CMGCKG	3 cut(s)	1528, 2424, 5009
MspCI	CTTAAG	2 cut(s)	325, 620
MspI	CCGG	5 cut(s)	58, 67, 105, 334, 3210
MspR9I	CCNGG	4 cut(s)	2056, 2669, 2763, 3002
Mva1269I	GAATGC	2 cut(s)	2948, 5032
MvaI	CCWGG	4 cut(s)	2056, 2669, 2763, 3002
MvnI	CGCG	1 cut(s)	1642
NaeI	GCCGGC	2 cut(s)	59, 106
NdeI	CATATG	5 cut(s)	1352, 1756, 2086, 2298, 4351
NgoMIV	GCCGGC	2 cut(s)	57, 104
NlaIV	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3349
NmuCI	GTSAC	6 cut(s)	645, 721, 1779, 2426, 2918, 3531
NsbI	TGCGCA	1 cut(s)	3707
NsiI	ATGCAT	2 cut(s)	1363, 2878
PaeI	GCATGC	3 cut(s)	2040, 3706, 4469
PagI	TCATGA	2 cut(s)	2967, 5045
PaqCI	CACCTGC	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	4901
PciI	ACATGT	3 cut(s)	428, 2788, 4217
PciSI	GCTCTTC	2 cut(s)	2229, 2640
PctI	GAATGC	2 cut(s)	2948, 5032
PdiI	GCCGGC	2 cut(s)	59, 106
PdmI	GAANNNNTTC	4 cut(s)	1081, 2715, 3060, 3381
PfeI	GAWTC	9 cut(s)	773, 1824, 2357, 2627, 3230, 3524, 3551, 3754, 4274
Pfl23II	CGTACG	1 cut(s)	1110
PflMI	CCANNNNNTGG	2 cut(s)	1073, 2061
PfoI	TCCNGGA	1 cut(s)	2761
PinAI	ACCGGT	2 cut(s)	66, 3209
PleI	GAGTC	5 cut(s)	99, 652, 1781, 1975, 2965
PpsI	GAGTC	5 cut(s)	99, 652, 1781, 1975, 2965
PscI	ACATGT	3 cut(s)	428, 2788, 4217
PshAI	GACNNNNGTC	1 cut(s)	1664
PshBI	ATTAAT	2 cut(s)	2495, 3777
PsiI	TTATAA	2 cut(s)	1586, 3626
Psp1406I	AACGTT	1 cut(s)	3867
Psp6I	CCWGG	4 cut(s)	2054, 2667, 2761, 3000
PspFI	CCCAGC	3 cut(s)	836, 2573, 4289
PspGI	CCWGG	4 cut(s)	2054, 2667, 2761, 3000
PspLI	CGTACG	1 cut(s)	1110
PspN4I	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3349
PspOMI	GGGCCC	1 cut(s)	2773
PspPI	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3217, 3347, 3643
PstNI	CAGNNNCTG	3 cut(s)	3757, 4001, 4940
PsuI	RGATCY	5 cut(s)	1246, 2080, 2671, 3728, 4604
PvuII	CAGCTG	3 cut(s)	1528, 2424, 5009
RsaI	GTAC	9 cut(s)	525, 951, 1112, 1341, 2939, 3040, 4053, 4734, 4932
RsaNI	GTAC	9 cut(s)	524, 950, 1111, 1340, 2938, 3039, 4052, 4733, 4931
RseI	CAYNNNNRTG	4 cut(s)	1803, 2480, 3976, 4233
SalI	GTCGAC	1 cut(s)	4221
SapI	GCTCTTC	2 cut(s)	2229, 2640
Sau96I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3217, 3347, 3643
ScaI	AGTACT	1 cut(s)	2939
SchI	GAGTC	5 cut(s)	100, 653, 1781, 1975, 2965
ScrFI	CCNGG	4 cut(s)	2056, 2669, 2763, 3002
SduI	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
SfcI	CTRYAG	2 cut(s)	4029, 4056
SfiI	GGCCNNNNNGGCC	1 cut(s)	989
SinI	GGWCC	4 cut(s)	497, 1774, 3217, 3347
SmiMI	CAYNNNNRTG	4 cut(s)	1803, 2480, 3976, 4233
SphI	GCATGC	3 cut(s)	2040, 3706, 4469
SseBI	AGGCCT	1 cut(s)	4901
SsiI	CCGC	5 cut(s)	1772, 2375, 2665, 4691, 5017
SspI	AATATT	4 cut(s)	1869, 2493, 2686, 4246
SspMI	CTAG	8 cut(s)	663, 735, 1395, 1473, 3093, 3156, 3224, 3234
StuI	AGGCCT	1 cut(s)	4901
StyD4I	CCNGG	4 cut(s)	2054, 2667, 2761, 3000
StyI	CCWWGG	1 cut(s)	3732
TaiI	ACGT	9 cut(s)	593, 1112, 1116, 1996, 2901, 3533, 3870, 4076, 4458
TaqI	TCGA	7 cut(s)	1038, 1810, 3253, 3322, 3554, 4022, 4222
TaqII	GACCGA	1 cut(s)	192
TatI	WGTACW	2 cut(s)	2937, 3038
TauI	GCSGC	2 cut(s)	4693, 5020
TfiI	GAWTC	9 cut(s)	773, 1824, 2357, 2627, 3230, 3524, 3551, 3754, 4274
TseFI	GTSAC	6 cut(s)	645, 721, 1779, 2426, 2918, 3531
Tsp45I	GTSAC	6 cut(s)	645, 721, 1779, 2426, 2918, 3531
Van91I	CCANNNNNTGG	2 cut(s)	1073, 2061
Vha464I	CTTAAG	2 cut(s)	325, 620
VpaK11BI	GGWCC	4 cut(s)	497, 1774, 3217, 3347
VspI	ATTAAT	2 cut(s)	2495, 3777
XagI	CCTNNNNNAGG	3 cut(s)	2436, 2745, 4495
XbaI	TCTAGA	1 cut(s)	3155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4108
XmiI	GTMKAC	2 cut(s)	4222, 4400
XmnI	GAANNNNTTC	4 cut(s)	1081, 2715, 3060, 3381
XspI	CTAG	8 cut(s)	663, 735, 1395, 1473, 3093, 3156, 3224, 3234
ZrmI	AGTACT	1 cut(s)	2939
Zsp2I	ATGCAT	2 cut(s)	1363, 2878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.