E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40770 AT2G40770 AT2G40770 |
| fragaria_vesca | FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 |
| malus_domestica | MD01G1169300.v1.1 |
| prunus_persica | Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 |
| pyrus_communis | pycom01g18200 |
| rosa_chinensis | RchiOBHm_Chr1g0372551 |
| rosa_laevigata | RLG00000026892 |
| rosa_multiflora | Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00284860 |
| rosa_rugosa | Rorug01G0372700 |
| rosa_samantha | Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800 |
| rosa_wichuraiana | Rw1G033520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1517, 3516, 3596 |
| Acc16I | TGCGCA | 1 cut(s) | 3677 |
| Acc65I | GGTACC | 1 cut(s) | 4328 |
| AccB1I | GGYRCC | 2 cut(s) | 1505, 4328 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1031 |
| AccI | GTMKAC | 1 cut(s) | 4195 |
| AciI | CCGC | 5 cut(s) | 536, 1876, 2315, 2599, 4896 |
| AclWI | GGATC | 5 cut(s) | 27, 1212, 2006, 2285, 4373 |
| AcoI | YGGCCR | 4 cut(s) | 23, 939, 3688, 4558 |
| AcuI | CTGAAG | 8 cut(s) | 108, 225, 669, 2598, 3185, 3441, 3813, 3993 |
| AcyI | GRCGYC | 2 cut(s) | 1744, 3938 |
| AfeI | AGCGCT | 1 cut(s) | 2472 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 461, 1031, 2372, 2680, 3610, 3621, 4470, 4928 |
| AflII | CTTAAG | 2 cut(s) | 289, 575 |
| AflIII | ACRYGT | 3 cut(s) | 1170, 2749, 4190 |
| AjnI | CCWGG | 5 cut(s) | 766, 2349, 2601, 3771, 4560 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3708, 3740, 3926, 3958, 4915, 4947 |
| Alw21I | GWGCWC | 4 cut(s) | 192, 2172, 2381, 2586 |
| Alw26I | GTCTC | 1 cut(s) | 4999 |
| AlwI | GGATC | 5 cut(s) | 27, 1212, 2006, 2285, 4373 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 767, 2265, 3478, 3971, 4910 |
| Ama87I | CYCGRG | 1 cut(s) | 2211 |
| Aor51HI | AGCGCT | 1 cut(s) | 2472 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1157, 1189 |
| AseI | ATTAAT | 3 cut(s) | 1644, 2429, 3747 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 162, 1039, 1381, 2649, 2688, 3033 |
| Asp718I | GGTACC | 1 cut(s) | 4328 |
| AspLEI | GCGC | 5 cut(s) | 888, 2473, 3678, 3771, 4891 |
| AspS9I | GGNCC | 9 cut(s) | 452, 764, 1705, 2605, 3094, 3190, 3320, 3613, 4731 |
| AsuC2I | CCSGG | 3 cut(s) | 2694, 4049, 4703 |
| AsuHPI | GGTGA | 7 cut(s) | 260, 272, 960, 1056, 1748, 3498, 4043 |
| AsuII | TTCGAA | 2 cut(s) | 3119, 4075 |
| AvaI | CYCGRG | 1 cut(s) | 2211 |
| AvaII | GGWCC | 7 cut(s) | 452, 764, 1705, 2605, 3190, 3320, 4731 |
| AxyI | CCTNAGG | 1 cut(s) | 2124 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2387, 2420, 2834, 2867 |
| BalI | TGGCCA | 1 cut(s) | 3690 |
| BanI | GGYRCC | 2 cut(s) | 1505, 4328 |
| BanII | GRGCYC | 1 cut(s) | 2381 |
| BauI | CACGAG | 1 cut(s) | 4348 |
| BbsI | GAAGAC | 2 cut(s) | 1170, 3941 |
| Bbv12I | GWGCWC | 4 cut(s) | 192, 2172, 2381, 2586 |
| BceAI | ACGGC | 2 cut(s) | 873, 4573 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 308, 342 |
| BciT130I | CCWGG | 5 cut(s) | 768, 2351, 2603, 3773, 4562 |
| BclI | TGATCA | 3 cut(s) | 70, 2743, 3241 |
| BcnI | CCSGG | 3 cut(s) | 2694, 4049, 4703 |
| BcoDI | GTCTC | 1 cut(s) | 4999 |
| BfaI | CTAG | 7 cut(s) | 621, 693, 1986, 3066, 3207, 3849, 4634 |
| BfmI | CTRYAG | 4 cut(s) | 3656, 3999, 4374, 4989 |
| BfoI | RGCGCY | 3 cut(s) | 889, 2474, 4892 |
| BfrI | CTTAAG | 2 cut(s) | 289, 575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1546 |
| BglII | AGATCT | 1 cut(s) | 3004 |
| BlpI | GCTNAGC | 1 cut(s) | 1887 |
| BmcAI | AGTACT | 1 cut(s) | 2912 |
| Bme1390I | CCNGG | 8 cut(s) | 768, 2351, 2603, 2694, 3773, 4049, 4562, 4703 |
| Bme18I | GGWCC | 7 cut(s) | 452, 764, 1705, 2605, 3190, 3320, 4731 |
| BmeT110I | CYCGRG | 1 cut(s) | 2211 |
| BmgT120I | GGNCC | 9 cut(s) | 452, 764, 1705, 2605, 3094, 3190, 3320, 3613, 4731 |
| BmiI | GGNNCC | 8 cut(s) | 1507, 1530, 1582, 2607, 3322, 4330, 4566, 4933 |
| BmrFI | CCNGG | 8 cut(s) | 768, 2351, 2603, 2694, 3773, 4049, 4562, 4703 |
| BmrI | ACTGGG | 1 cut(s) | 3504 |
| BmuI | ACTGGG | 1 cut(s) | 3504 |
| BpiI | GAAGAC | 2 cut(s) | 1170, 3941 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 502, 534 |
| BpmI | CTGGAG | 1 cut(s) | 768 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2474 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1887 |
| Bpu14I | TTCGAA | 2 cut(s) | 3119, 4075 |
| BpuEI | CTTGAG | 6 cut(s) | 1176, 2352, 2523, 3686, 3745, 4390 |
| BpuMI | CCSGG | 3 cut(s) | 2694, 4049, 4703 |
| BsaBI | GATNNNNATC | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 1744, 3938 |
| BsaJI | CCNNGG | 3 cut(s) | 105, 984, 1200 |
| BsaWI | WCCGGW | 2 cut(s) | 35, 454 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1474, 1504, 1801, 1831, 1897, 1927, 3616, 3646 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 461, 1031, 2372, 2680, 3610, 3621, 4470, 4928 |
| Bse118I | RCCGGY | 1 cut(s) | 21 |
| Bse1I | ACTGG | 6 cut(s) | 751, 905, 1507, 3187, 3510, 4033 |
| Bse21I | CCTNAGG | 1 cut(s) | 2124 |
| Bse3DI | GCAATG | 2 cut(s) | 840, 3604 |
| Bse8I | GATNNNNATC | 1 cut(s) | 270 |
| BseBI | CCWGG | 5 cut(s) | 768, 2351, 2603, 3773, 4562 |
| BseDI | CCNNGG | 3 cut(s) | 105, 984, 1200 |
| BseJI | GATNNNNATC | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 461, 1031, 2372, 2680, 3610, 3621, 4470, 4928 |
| BseMI | GCAATG | 2 cut(s) | 840, 3604 |
| BseNI | ACTGG | 6 cut(s) | 751, 905, 1507, 3187, 3510, 4033 |
| BseRI | GAGGAG | 4 cut(s) | 2038, 2112, 2144, 3281 |
| BseX3I | CGGCCG | 1 cut(s) | 23 |
| BseYI | CCCAGC | 2 cut(s) | 794, 2507 |
| BsgI | GTGCAG | 3 cut(s) | 912, 3033, 3438 |
| Bsh1285I | CGRYCG | 1 cut(s) | 26 |
| BshNI | GGYRCC | 2 cut(s) | 1505, 4328 |
| BsiEI | CGRYCG | 1 cut(s) | 26 |
| BsiHKAI | GWGCWC | 4 cut(s) | 192, 2172, 2381, 2586 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2211 |
| BsiSI | CCGG | 8 cut(s) | 22, 36, 455, 854, 1526, 2693, 4049, 4702 |
| BslFI | GGGAC | 4 cut(s) | 1630, 1924, 3124, 3306 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 461, 1031, 2372, 2680, 3610, 3621, 4470, 4928 |
| BsmAI | GTCTC | 1 cut(s) | 4999 |
| BsmFI | GGGAC | 4 cut(s) | 1630, 1924, 3124, 3306 |
| BsmI | GAATGC | 1 cut(s) | 4022 |
| BsoBI | CYCGRG | 1 cut(s) | 2211 |
| Bsp119I | TTCGAA | 2 cut(s) | 3119, 4075 |
| Bsp1286I | GDGCHC | 4 cut(s) | 192, 2172, 2381, 2586 |
| Bsp1407I | TGTACA | 1 cut(s) | 2553 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1887 |
| BspACI | CCGC | 5 cut(s) | 536, 1876, 2315, 2599, 4896 |
| BspHI | TCATGA | 2 cut(s) | 1749, 5033 |
| BspLI | GGNNCC | 8 cut(s) | 1507, 1530, 1582, 2607, 3322, 4330, 4566, 4933 |
| BspPI | GGATC | 5 cut(s) | 27, 1212, 2006, 2285, 4373 |
| BspQI | GCTCTTC | 2 cut(s) | 2160, 2574 |
| BspT104I | TTCGAA | 2 cut(s) | 3119, 4075 |
| BspT107I | GGYRCC | 2 cut(s) | 1505, 4328 |
| BspTI | CTTAAG | 2 cut(s) | 289, 575 |
| BsrDI | GCAATG | 2 cut(s) | 840, 3604 |
| BsrFI | RCCGGY | 1 cut(s) | 21 |
| BsrGI | TGTACA | 1 cut(s) | 2553 |
| BsrI | ACTGG | 6 cut(s) | 751, 905, 1507, 3187, 3510, 4033 |
| BssAI | RCCGGY | 1 cut(s) | 21 |
| BssECI | CCNNGG | 3 cut(s) | 105, 984, 1200 |
| BssNI | GRCGYC | 2 cut(s) | 1744, 3938 |
| BssSI | CACGAG | 1 cut(s) | 4348 |
| BssT1I | CCWWGG | 1 cut(s) | 984 |
| Bst2BI | CACGAG | 1 cut(s) | 4348 |
| Bst2UI | CCWGG | 5 cut(s) | 768, 2351, 2603, 3773, 4562 |
| BstACI | GRCGYC | 2 cut(s) | 1744, 3938 |
| BstAFI | CTTAAG | 2 cut(s) | 289, 575 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 83, 590 |
| BstAUI | TGTACA | 1 cut(s) | 2553 |
| BstBI | TTCGAA | 2 cut(s) | 3119, 4075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2370 |
| BstH2I | RGCGCY | 3 cut(s) | 889, 2474, 4892 |
| BstHHI | GCGC | 5 cut(s) | 888, 2473, 3678, 3771, 4891 |
| BstMAI | GTCTC | 1 cut(s) | 4999 |
| BstMCI | CGRYCG | 1 cut(s) | 26 |
| BstNI | CCWGG | 5 cut(s) | 768, 2351, 2603, 3773, 4562 |
| BstSCI | CCNGG | 8 cut(s) | 766, 2349, 2601, 2692, 3771, 4047, 4560, 4701 |
| BstSFI | CTRYAG | 4 cut(s) | 3656, 3999, 4374, 4989 |
| BstV2I | GAAGAC | 2 cut(s) | 1170, 3941 |
| BstX2I | RGATCY | 5 cut(s) | 1204, 2011, 2290, 3004, 4378 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 522, 1867, 2416 |
| BstYI | RGATCY | 5 cut(s) | 1204, 2011, 2290, 3004, 4378 |
| BstZI | CGGCCG | 1 cut(s) | 23 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2124 |
| BtsI | GCAGTG | 3 cut(s) | 602, 4446, 4806 |
| CaiI | CAGNNNCTG | 5 cut(s) | 767, 2265, 3478, 3971, 4910 |
| CciI | TCATGA | 2 cut(s) | 1749, 5033 |
| CfoI | GCGC | 5 cut(s) | 888, 2473, 3678, 3771, 4891 |
| Cfr10I | RCCGGY | 1 cut(s) | 21 |
| Cfr13I | GGNCC | 9 cut(s) | 452, 764, 1705, 2605, 3094, 3190, 3320, 3613, 4731 |
| CseI | GACGC | 4 cut(s) | 1553, 1752, 3126, 3946 |
| CsiI | ACCWGGT | 1 cut(s) | 766 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4154, 4189 |
| DraI | TTTAAA | 1 cut(s) | 3909 |
| EaeI | YGGCCR | 4 cut(s) | 23, 939, 3688, 4558 |
| EagI | CGGCCG | 1 cut(s) | 23 |
| EciI | GGCGGA | 1 cut(s) | 2588 |
| Ecl136II | GAGCTC | 1 cut(s) | 2379 |
| EclXI | CGGCCG | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 984 |
| Eco147I | AGGCCT | 2 cut(s) | 1355, 2354 |
| Eco24I | GRGCYC | 1 cut(s) | 2381 |
| Eco47I | GGWCC | 7 cut(s) | 452, 764, 1705, 2605, 3190, 3320, 4731 |
| Eco47III | AGCGCT | 1 cut(s) | 2472 |
| Eco52I | CGGCCG | 1 cut(s) | 23 |
| Eco53kI | GAGCTC | 1 cut(s) | 2379 |
| Eco57I | CTGAAG | 8 cut(s) | 108, 225, 669, 2598, 3185, 3441, 3813, 3993 |
| Eco81I | CCTNAGG | 1 cut(s) | 2124 |
| Eco88I | CYCGRG | 1 cut(s) | 2211 |
| EcoICRI | GAGCTC | 1 cut(s) | 2379 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2370 |
| EcoO109I | RGGNCCY | 3 cut(s) | 764, 1705, 3094 |
| EcoRI | GAATTC | 3 cut(s) | 383, 1057, 4511 |
| EcoRII | CCWGG | 5 cut(s) | 766, 2349, 2601, 3771, 4560 |
| EcoT14I | CCWWGG | 1 cut(s) | 984 |
| EcoT22I | ATGCAT | 3 cut(s) | 1321, 4022, 5026 |
| EcoT38I | GRGCYC | 1 cut(s) | 2381 |
| ErhI | CCWWGG | 1 cut(s) | 984 |
| FaqI | GGGAC | 4 cut(s) | 1630, 1924, 3124, 3306 |
| FauI | CCCGC | 2 cut(s) | 2308, 4903 |
| FauNDI | CATATG | 3 cut(s) | 1687, 2017, 4324 |
| FbaI | TGATCA | 3 cut(s) | 70, 2743, 3241 |
| FblI | GTMKAC | 1 cut(s) | 4195 |
| FriOI | GRGCYC | 1 cut(s) | 2381 |
| FspBI | CTAG | 7 cut(s) | 621, 693, 1986, 3066, 3207, 3849, 4634 |
| FspI | TGCGCA | 1 cut(s) | 3677 |
| GlaI | GCGC | 5 cut(s) | 887, 2472, 3677, 3770, 4890 |
| GsaI | CCCAGC | 2 cut(s) | 798, 2511 |
| GsuI | CTGGAG | 1 cut(s) | 768 |
| HaeII | RGCGCY | 3 cut(s) | 889, 2474, 4892 |
| HapII | CCGG | 8 cut(s) | 22, 36, 455, 854, 1526, 2693, 4049, 4702 |
| HgaI | GACGC | 4 cut(s) | 1553, 1752, 3126, 3946 |
| HhaI | GCGC | 5 cut(s) | 888, 2473, 3678, 3771, 4891 |
| Hin1I | GRCGYC | 2 cut(s) | 1744, 3938 |
| Hin6I | GCGC | 5 cut(s) | 886, 2471, 3676, 3769, 4889 |
| HinP1I | GCGC | 5 cut(s) | 886, 2471, 3676, 3769, 4889 |
| HincII | GTYRAC | 4 cut(s) | 549, 3075, 3993, 4196 |
| HindII | GTYRAC | 4 cut(s) | 549, 3075, 3993, 4196 |
| HindIII | AAGCTT | 4 cut(s) | 95, 1928, 2342, 3732 |
| HpaII | CCGG | 8 cut(s) | 22, 36, 455, 854, 1526, 2693, 4049, 4702 |
| HphI | GGTGA | 7 cut(s) | 260, 272, 960, 1056, 1748, 3498, 4043 |
| Hpy166II | GTNNAC | 9 cut(s) | 481, 549, 773, 3075, 3815, 3861, 3993, 4196, 4708 |
| Hpy8I | GTNNAC | 9 cut(s) | 481, 549, 773, 3075, 3815, 3861, 3993, 4196, 4708 |
| Hpy99I | CGWCG | 1 cut(s) | 1746 |
| HpyCH4IV | ACGT | 4 cut(s) | 1308, 3503, 3837, 4190 |
| HpySE526I | ACGT | 4 cut(s) | 1308, 3503, 3837, 4190 |
| Hsp92I | GRCGYC | 2 cut(s) | 1744, 3938 |
| HspAI | GCGC | 5 cut(s) | 886, 2471, 3676, 3769, 4889 |
| KpnI | GGTACC | 1 cut(s) | 4332 |
| KroI | GCCGGC | 1 cut(s) | 21 |
| KroNI | GCCGGC | 1 cut(s) | 23 |
| Ksp22I | TGATCA | 3 cut(s) | 70, 2743, 3241 |
| LguI | GCTCTTC | 2 cut(s) | 2160, 2574 |
| LmnI | GCTCC | 7 cut(s) | 1237, 1259, 1534, 2376, 4435, 4613, 5014 |
| MabI | ACCWGGT | 1 cut(s) | 766 |
| MaeI | CTAG | 7 cut(s) | 621, 693, 1986, 3066, 3207, 3849, 4634 |
| MaeII | ACGT | 4 cut(s) | 1308, 3503, 3837, 4190 |
| MfeI | CAATTG | 1 cut(s) | 1494 |
| MflI | RGATCY | 5 cut(s) | 1204, 2011, 2290, 3004, 4378 |
| MhlI | GDGCHC | 4 cut(s) | 192, 2172, 2381, 2586 |
| MlsI | TGGCCA | 1 cut(s) | 3690 |
| MluNI | TGGCCA | 1 cut(s) | 3690 |
| MlyI | GAGTC | 8 cut(s) | 64, 608, 711, 1712, 1906, 3222, 4291, 4963 |
| MmeI | TCCRAC | 4 cut(s) | 425, 1805, 3006, 3520 |
| Mox20I | TGGCCA | 1 cut(s) | 3690 |
| Mph1103I | ATGCAT | 3 cut(s) | 1321, 4022, 5026 |
| MroNI | GCCGGC | 1 cut(s) | 21 |
| MroXI | GAANNNNTTC | 6 cut(s) | 162, 1039, 1381, 2649, 2688, 3033 |
| MscI | TGGCCA | 1 cut(s) | 3690 |
| MslI | CAYNNNNRTG | 6 cut(s) | 63, 973, 1734, 1865, 2414, 4206 |
| Msp20I | TGGCCA | 1 cut(s) | 3690 |
| MspA1I | CMGCKG | 3 cut(s) | 3419, 4898, 4997 |
| MspCI | CTTAAG | 2 cut(s) | 289, 575 |
| MspI | CCGG | 8 cut(s) | 22, 36, 455, 854, 1526, 2693, 4049, 4702 |
| MspR9I | CCNGG | 8 cut(s) | 768, 2351, 2603, 2694, 3773, 4049, 4562, 4703 |
| MunI | CAATTG | 1 cut(s) | 1494 |
| Mva1269I | GAATGC | 1 cut(s) | 4022 |
| MvaI | CCWGG | 5 cut(s) | 768, 2351, 2603, 3773, 4562 |
| NaeI | GCCGGC | 1 cut(s) | 23 |
| NciI | CCSGG | 3 cut(s) | 2694, 4049, 4703 |
| NdeI | CATATG | 3 cut(s) | 1687, 2017, 4324 |
| NgoMIV | GCCGGC | 1 cut(s) | 21 |
| NlaIV | GGNNCC | 8 cut(s) | 1507, 1530, 1582, 2607, 3322, 4330, 4566, 4933 |
| NmuCI | GTSAC | 9 cut(s) | 56, 600, 1062, 1304, 1710, 2200, 2891, 3504, 4345 |
| NsbI | TGCGCA | 1 cut(s) | 3677 |
| NsiI | ATGCAT | 3 cut(s) | 1321, 4022, 5026 |
| NspV | TTCGAA | 2 cut(s) | 3119, 4075 |
| PaeI | GCATGC | 7 cut(s) | 1553, 1971, 2309, 3676, 4047, 4442, 5024 |
| PagI | TCATGA | 2 cut(s) | 1749, 5033 |
| PceI | AGGCCT | 2 cut(s) | 1355, 2354 |
| PciI | ACATGT | 2 cut(s) | 1170, 2749 |
| PciSI | GCTCTTC | 2 cut(s) | 2160, 2574 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3125, 3134 |
| PctI | GAATGC | 1 cut(s) | 4022 |
| PdiI | GCCGGC | 1 cut(s) | 23 |
| PdmI | GAANNNNTTC | 6 cut(s) | 162, 1039, 1381, 2649, 2688, 3033 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1031 |
| PleI | GAGTC | 8 cut(s) | 63, 607, 710, 1712, 1906, 3222, 4290, 4962 |
| PpsI | GAGTC | 8 cut(s) | 63, 607, 710, 1712, 1906, 3222, 4290, 4962 |
| PpuMI | RGGWCCY | 2 cut(s) | 764, 1705 |
| PscI | ACATGT | 2 cut(s) | 1170, 2749 |
| PshBI | ATTAAT | 3 cut(s) | 1644, 2429, 3747 |
| PsiI | TTATAA | 3 cut(s) | 1517, 3516, 3596 |
| Psp124BI | GAGCTC | 1 cut(s) | 2381 |
| Psp5II | RGGWCCY | 2 cut(s) | 764, 1705 |
| Psp6I | CCWGG | 5 cut(s) | 766, 2349, 2601, 3771, 4560 |
| PspFI | CCCAGC | 2 cut(s) | 794, 2507 |
| PspGI | CCWGG | 5 cut(s) | 766, 2349, 2601, 3771, 4560 |
| PspN4I | GGNNCC | 8 cut(s) | 1507, 1530, 1582, 2607, 3322, 4330, 4566, 4933 |
| PspPI | GGNCC | 9 cut(s) | 452, 764, 1705, 2605, 3094, 3190, 3320, 3613, 4731 |
| PspPPI | RGGWCCY | 2 cut(s) | 764, 1705 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3807, 3839 |
| PstNI | CAGNNNCTG | 5 cut(s) | 767, 2265, 3478, 3971, 4910 |
| PsuI | RGATCY | 5 cut(s) | 1204, 2011, 2290, 3004, 4378 |
| PvuII | CAGCTG | 2 cut(s) | 3419, 4997 |
| RseI | CAYNNNNRTG | 6 cut(s) | 63, 973, 1734, 1865, 2414, 4206 |
| SacI | GAGCTC | 1 cut(s) | 2381 |
| SalI | GTCGAC | 1 cut(s) | 4194 |
| SapI | GCTCTTC | 2 cut(s) | 2160, 2574 |
| Sau96I | GGNCC | 9 cut(s) | 452, 764, 1705, 2605, 3094, 3190, 3320, 3613, 4731 |
| ScaI | AGTACT | 1 cut(s) | 2912 |
| SchI | GAGTC | 8 cut(s) | 64, 608, 711, 1712, 1906, 3222, 4291, 4963 |
| ScrFI | CCNGG | 8 cut(s) | 768, 2351, 2603, 2694, 3773, 4049, 4562, 4703 |
| SduI | GDGCHC | 4 cut(s) | 192, 2172, 2381, 2586 |
| SexAI | ACCWGGT | 1 cut(s) | 766 |
| SfcI | CTRYAG | 4 cut(s) | 3656, 3999, 4374, 4989 |
| SfuI | TTCGAA | 2 cut(s) | 3119, 4075 |
| SinI | GGWCC | 7 cut(s) | 452, 764, 1705, 2605, 3190, 3320, 4731 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 63, 973, 1734, 1865, 2414, 4206 |
| SmlI | CTYRAG | 8 cut(s) | 289, 575, 1191, 2367, 2538, 3665, 3760, 4405 |
| SmoI | CTYRAG | 8 cut(s) | 289, 575, 1191, 2367, 2538, 3665, 3760, 4405 |
| SphI | GCATGC | 7 cut(s) | 1553, 1971, 2309, 3676, 4047, 4442, 5024 |
| SseBI | AGGCCT | 2 cut(s) | 1355, 2354 |
| SsiI | CCGC | 5 cut(s) | 536, 1876, 2315, 2599, 4896 |
| SspI | AATATT | 7 cut(s) | 48, 1648, 1800, 2427, 2620, 2899, 4219 |
| SspMI | CTAG | 7 cut(s) | 621, 693, 1986, 3066, 3207, 3849, 4634 |
| SstI | GAGCTC | 1 cut(s) | 2381 |
| StuI | AGGCCT | 2 cut(s) | 1355, 2354 |
| StyD4I | CCNGG | 8 cut(s) | 766, 2349, 2601, 2692, 3771, 4047, 4560, 4701 |
| StyI | CCWWGG | 1 cut(s) | 984 |
| TaiI | ACGT | 4 cut(s) | 1311, 3506, 3840, 4193 |
| TaqI | TCGA | 9 cut(s) | 298, 1741, 3119, 3128, 3226, 3295, 3524, 4075, 4195 |
| TaqII | GACCGA | 1 cut(s) | 156 |
| TatI | WGTACW | 3 cut(s) | 1398, 2553, 2910 |
| TseFI | GTSAC | 9 cut(s) | 56, 600, 1062, 1304, 1710, 2200, 2891, 3504, 4345 |
| Tsp45I | GTSAC | 9 cut(s) | 56, 600, 1062, 1304, 1710, 2200, 2891, 3504, 4345 |
| TspGWI | ACGGA | 5 cut(s) | 419, 714, 925, 2720, 4148 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1031 |
| Vha464I | CTTAAG | 2 cut(s) | 289, 575 |
| VpaK11BI | GGWCC | 7 cut(s) | 452, 764, 1705, 2605, 3190, 3320, 4731 |
| VspI | ATTAAT | 3 cut(s) | 1644, 2429, 3747 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2370 |
| XbaI | TCTAGA | 1 cut(s) | 4633 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3155, 4078 |
| XmiI | GTMKAC | 1 cut(s) | 4195 |
| XmnI | GAANNNNTTC | 6 cut(s) | 162, 1039, 1381, 2649, 2688, 3033 |
| XspI | CTAG | 7 cut(s) | 621, 693, 1986, 3066, 3207, 3849, 4634 |
| ZrmI | AGTACT | 1 cut(s) | 2912 |
| Zsp2I | ATGCAT | 3 cut(s) | 1321, 4022, 5026 |