Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003903

Physical Location & Seq

Genomic Coordinates Reverse (-)

63198159 .. 63209038

Gene Structure 10880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4482 bp

ATGGGTAGAAGGAAGCAAAGCCGGCCTCACCGGTCAGGTGGGATTGTATTAGAGAGTCAAGCAACTGCTGGCAGGGGAGAATTGGATGAGGGGAGGCTTTTAAATGGAGAAACGCAAAAGAATGACATACATGAAGTTGATAGACCGTATTTTGTGGAAGTTGATCGGTCTAATTGGGGATCAGATGAGCACCTTGATATTGCTGAAGTGGTTTTAACAGATTTGACCTTCAGAGAAGGGTTTTGCAGTGATGTCATTAGTGGGGGTTTGAATTGCGATAGTTACTCCTTAAGGTTCCGGTTATCTAATGTAAAGGAGTTCATTGGTCGTATTAAGCTTGGTCATTGGCCTTTGTTGTCCTCTGCTGATATATCTTTGGAATTCGTTAAAACATGTTCAAGCGAGTATATGGACATGGACAAGGACACCTGCTCAGTAATCTTGTCAGGGAGTTTTGATGGACCAGATGAAGGTATTTCTGGTCTGGTACACTTGGCAAGTTTGAAGTTTATGACACTGAGGCCAGCTCTGTCCATTGGGTTTGTGAATGATACGTCAACCATCAGGGTCAGGGTGGAGATACTTAAGAGTGCATTTAATGCTTGTGAGTCACTTCTGGACAATACTAGGCAAGTGTGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACACCCAGAAGTAGTGACTTCCGAGGCTAGGTATGGAGTCAGTAGATCAACAGACATGGAAATTGATTCGCATACTGACACTGGACATGCTAATTCAAATCATAGTAAACATGCAAGGTTTGATGTTGCTGGGTTCTATGAAGCCATTAAACCCTCAAAAGCAGATACAATGCTTCAAGATGTCCTGCCTGATTTGCTTCCTGAATTGAAACCATATCAGCGCCGTGCAGCTTACTGGATGGTACAGAGGGAGAAAAGCGATGCACAAAGTCTGGCCCAAGAGGCCAAAAGTCAGTTCATGTCGCCTTTATGTTTGCCCTTGCAATTTCTCGACAGATGTTCAAAAATGTTCTACAACCCATTCAGTGGAAATGTTTCGCTGCACCAAGAGCATTTTTCAACGTATGTCTCTGGTGGTATTCTTGCTGATGAGATGGGCATGGGGAAAACTGTTGAACTTCTCGCTTGCATCTTTGCTCATCAGAAGTCAGCAGATGAAGACCCCATATTTGCTGATGCTGAAATTCAAGATACTGAGGATCTGAAAATAAAGCTTAAAAGATTAAAAAGGGAGCGAGTTGAATGTATATGTGGAGCTGTGAGTGAAAGTATCAGATACAGAGGACTATGGGTACAGTGCGACATATGTGATGCATGGCAACATGCCGATTGTGTGGGCTATTCACCTAGAGGAAAGACTATAAAATCCAACGAGGCTTCTAACGAAAAAGAACATGATAAGAGTTCGGTGGTTAAGAATTATACTAGAAAGAAGAATACAGCCACAATAGATGTGAGAGATGAGGAATATATATGCCAGCTGTGCTCAGAACTGATACAGGCCACTACTTCTCCTGTTACTACTGGTGCCACTCTTATAATCTGTCCAGCTTCTATATTGCCCCAGTGGTATTCTGAAATTATGCGCCATACGCGTTCAGGTTCTTTAAAGACTTGCGTCTATGAAGGTGTAAGAGAGGCATCTTTTTCAAACACATCTGTAATTGATATCAGTGAACTCATCAGTGCTGACATTGTGTTGACAACATATGATGTGCTTAAAGCGGACCTGTCACATGACTCTGATAGGCATGAAGGTGATCGACGCTTAATGAGATTCCAAAAGAGATACCCTGTTGTTCCAACTATTCTTACCAGAATATTCTGGTGGAGAATTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGCTGGTGCTGCAACAGAAATGGCTATGCGACTGTATGCGAAGCATCGTTGGTGCATAACGGGGACTCCTATACAACGTAAACTTGATGACTTGTATGGACTTCTACGGTTTCTTAAAGCATGCCCTTTCAATGCTTCCAGGTGGTGGATTGAAGTTATACGAGATCCTTATGAGAGGAGAGATGCAGGAGCTATGGAATTTACACATAAATTCTTTAAAGAAATCATGTGGCGATCTTCAAAAGTGCATGTTGCAGATGAGTTGCAGCTTCCACCTCAGGAAGAATGTCTCTCTTGGCTCACTTTATCTCCAGTTGAAGAGCATTTTTACCAGAGGCAACATGAAACTTGTGTGAGTTATGCCCGAGAAGTCATTGAACATATGAAAGATGATATTATGAAGAGAAAAGTCAGAGGATGCTCAGCAGCTAAATCATCAGATTCTTTCATCACACATGCGGAGGCAGGAAAGCTGCTGAACACACTTCTGAAGCTTCGCCAAGCCAGCTGTCACCCTCAAGTAGGAAGCTCAGGACTGCGTTCTCTCCAACAGTCTCCCATGACTATGGAGGAAATATTAATGGTTCTTGTAAGTAAAACCAAGATAGAAGGAGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTTAATGGGCTCGCTGGGATAGCTGTAATTGAGCAAAATTTTACTCAAGCTGTATCACTGTATAAGGAATCGTTGACTTTAGCTGAAGAGCACACTGAGGATTTCCGCCTGGATCCTTTGTTGAATATTCACATTCATCATAATCTTGCCGAAATACTTCCATTAGCAACAAGCTGCTCCCCTTCAAAAGGACAACATATTCCTGGAAAAATGGGCCCCTGTGATGAACATGTAGCAAAGAGGCGAAAACTGGGTGGGGAAGATAACTCATCAGAGAATGACTTATCTAATGCTCAAGAATATAATAACTCCCATGCATCATGTAGTTCCTTCACTGACGTATCTTTGAGAACAGTCTGTGACAATCTTAAACAAAAGTACTTATCTGCATTCAGTTCAAAGTTATTCATGACTCAGCAAGAGTTTAAGAAGTCTTACACCCAGGTTTGTAGCACAATTAGTGAGATCAAAGATGTAAGTACAGTCTGGTGGCTGGAAGCCCTTCTTCATGCTGAAAAGAATAATGACATTTCTAGTCTGTTGATCAGAAAGATTGAAGAGGCGCTCATAGGAACTCTAAACAATTCAAAGTCATCTAGAATTCCATCTCGTTTACGAAGCATAAGCGCTCTAAAGTATCACATGCAGACCGGTTTGGACCAACTAGAAGAATCTAGGAAACTGTTACTTGATCGACTTTTAGAAATTGATCAGACAATGGAAAAGCCAAAAGAGGAGGATATCCAGCGTGTGAGATACTGTCGAAATTGCAAAGCTAATGATGGTGGTCCCTTATGTGTTCTTTGTGAAGTAGATGAATTATTTCGGGGATATGAAGCAAGGCTCTTTCGTCTTGAGAAAATATCTGGAGGGATTGCTACCTCTGCTGAAGAGGCTGTGGATTTGCAGAAGAAGAACTCTGAACTTAATCGTTTCTATCAGAATTTATCACAGCCAATTAAGGATTCAACGTCACCAAAATCTAATCAAGAATCGAAGAAGAGAGATGTTGGCAAAGTTGTGGTTTCAAAATCCCCATCTGAATTAGAGGTTGTTCTTGGAGTTATAAAAAGCCATTGCAAGGCCCATTTAGGAAAGGAAGGTATATCAGAAGCTACCAAACACCTACACATTCTTGAGGGCATGCGCAAGGAGTATGGCCATGCAAGATCCTTGGCAATAGCTCAAGCTCAGATTCTGCAAGCTTATGATGAAATTAATATGGCAACTACAAGGTTGCGCCTGAGTGAAGATGAGAATGATAAATCTCTTGATGTATTAAGTGAAGATGAATTACCTTCAGCTAACGTTTTATACACCAGTGAAAAGTTCGCATCCTTGAGCTTGTTGTCTTGTATAAAAGGGAAGCTTCGTTATTTGAAGGGTTTGGTAGAAGCTAAACAAAAAATGCCATTTGGATGTCCAAATCATTCCTCAGTAACTGGAGAGGAAGCCACCATATCGACTTCTACAGAACAGAGAAATGAATGTGTACCTACAGGTGATAAAGAAACGTGCCCAGTTTGTCAAGAACAGTTAACCATTCGAAAGATGGTTTTCCCTTGTGGACATCTTACTTGCTGTAAATGTTTATTTGCAATTACTGAGAGACTACTAAATGGGAAAAAGGTTAAAGATAAGTGGGTAAAATGCCCAACATGTCGACAGCACACTGATGTTGCAAATATTGCTTTTGCTGATGATGGACAAAGTGAATCTTGTGGTTCTGCTGGGCTTCATGCAATCCAAAGTCGTGAAGAGTGTGAAGCATCTATTATAGTTCAAGGTTCATATGGAACAAAGATTGAAGCAGTTACAAGAAGAATTCTGTGGATAAAGTCTACCGATCCAGAGGCTAAAGTTCTTGTTTTCTCAAGCTGGAATGATGTCCTTGACGTATTGGAGCATGCCTTCATTGCTAATGGCATTACCTCTATAAGGATGAAAGGAGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C PHD SNF2_N zf-C3HC4

Protein Analysis

1493

Amino Acids

168.1

Weight (kDa)

6.32

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	296 - 800	1.5e-63	SNF2-related domain
SHPRH_helical-1st	PF21325	816 - 895	2.1e-24	E3 ubiquitin-protein ligase SHPRH, first helical domain
SHPRH_helical-2nd	PF21324	1002 - 1126	1e-06	E3 ubiquitin-protein ligase SHPRH, second helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40770 AT2G40770 AT2G40770
fragaria_vesca	FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110
malus_domestica	MD01G1169300.v1.1
prunus_persica	Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1
pyrus_communis	pycom01g18200
rosa_chinensis	RchiOBHm_Chr1g0372551
rosa_laevigata	RLG00000026892
rosa_multiflora	Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284860
rosa_rugosa	Rorug01G0372700
rosa_samantha	Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800
rosa_wichuraiana	Rw1G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1550, 3590
AarI	CACCTGC	1 cut(s)	437
Acc16I	TGCGCA	1 cut(s)	3671
Acc36I	ACCTGC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	1538
AccB7I	CCANNNNNTGG	2 cut(s)	1037, 2025
AccI	GTMKAC	2 cut(s)	4186, 4364
AccII	CGCG	1 cut(s)	1606
AciI	CCGC	3 cut(s)	1736, 2339, 2629
AclI	AACGTT	1 cut(s)	3831
AclWI	GGATC	7 cut(s)	187, 1218, 2039, 2630, 2643, 3687, 4364
AcoI	YGGCCR	1 cut(s)	3682
AcsI	RAATTY	9 cut(s)	380, 1194, 1845, 2078, 2090, 2560, 3123, 3466, 4347
AcuI	CTGAAG	6 cut(s)	214, 225, 2390, 2628, 3432, 3807
AfaI	GTAC	6 cut(s)	489, 915, 1305, 2903, 3004, 4017
AfeI	AGCGCT	1 cut(s)	3151
AfiI	CCNNNNNNNGG	8 cut(s)	470, 699, 1037, 2025, 2402, 2711, 3604, 4461
AflII	CTTAAG	2 cut(s)	289, 584
AflIII	ACRYGT	4 cut(s)	392, 1604, 2752, 4181
AgeI	ACCGGT	2 cut(s)	30, 3173
AjnI	CCWGG	4 cut(s)	2018, 2631, 2725, 2964
AjuI	GAANNNNNNNTTGG	4 cut(s)	950, 982, 3472, 3504
Alw21I	GWGCWC	3 cut(s)	192, 1499, 2616
Alw26I	GTCTC	4 cut(s)	1084, 2174, 2439, 4126
AlwI	GGATC	7 cut(s)	187, 1218, 2039, 2630, 2643, 3687, 4364
AlwNI	CAGNNNCTG	2 cut(s)	3721, 3965
Ama87I	CYCGRG	1 cut(s)	2244
Aor51HI	AGCGCT	1 cut(s)	3151
AoxI	GGCC	9 cut(s)	23, 347, 521, 945, 954, 1512, 2737, 3606, 3682
ApaI	GGGCCC	1 cut(s)	2741
ApeKI	GCWGC	7 cut(s)	899, 1051, 1889, 2146, 2306, 2353, 2697
ApoI	RAATTY	9 cut(s)	380, 1194, 1845, 2078, 2090, 2560, 3123, 3466, 4347
ArsI	GACNNNNNNTTYG	2 cut(s)	1163, 1195
AseI	ATTAAT	2 cut(s)	2459, 3741
AsiGI	ACCGGT	2 cut(s)	30, 3173
Asp700I	GAANNNNTTC	4 cut(s)	1045, 2679, 3024, 3345
AspLEI	GCGC	6 cut(s)	894, 1599, 3088, 3152, 3672, 3765
AspS9I	GGNCC	8 cut(s)	461, 946, 1738, 2737, 2738, 3181, 3311, 3607
AsuHPI	GGTGA	6 cut(s)	20, 1347, 1781, 2384, 3489, 4037
AsuII	TTCGAA	1 cut(s)	4069
AvaI	CYCGRG	1 cut(s)	2244
AvaII	GGWCC	4 cut(s)	461, 1738, 3181, 3311
AxyI	CCTNAGG	1 cut(s)	2157
BaeGI	GKGCMC	2 cut(s)	2741, 4043
BaeI	ACNNNNGTAYC	2 cut(s)	2847, 2880
BalI	TGGCCA	1 cut(s)	3684
BamHI	GGATCC	1 cut(s)	2635
BanI	GGYRCC	1 cut(s)	1538
BanII	GRGCYC	2 cut(s)	2535, 2741
BarI	GAAGNNNNNNTAC	2 cut(s)	3801, 3833
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	3 cut(s)	192, 1499, 2616
BbvI	GCAGC	7 cut(s)	911, 1038, 1876, 2158, 2318, 2340, 2684
BceAI	ACGGC	1 cut(s)	879
BciT130I	CCWGG	4 cut(s)	2020, 2633, 2727, 2966
BclI	TGATCA	2 cut(s)	3066, 3232
BcoDI	GTCTC	4 cut(s)	1084, 2174, 2439, 4126
BfaI	CTAG	8 cut(s)	627, 699, 1359, 1437, 3057, 3120, 3188, 3198
BfmI	CTRYAG	2 cut(s)	3993, 4020
BfoI	RGCGCY	3 cut(s)	895, 3089, 3153
BfrI	CTTAAG	2 cut(s)	289, 584
BfuAI	ACCTGC	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	953
BisI	GCNGC	7 cut(s)	900, 1052, 1890, 2147, 2307, 2354, 2698
BlpI	GCTNAGC	1 cut(s)	2302
BlsI	GCNGC	7 cut(s)	901, 1053, 1891, 2148, 2308, 2355, 2699
BmcAI	AGTACT	1 cut(s)	2903
Bme1390I	CCNGG	4 cut(s)	2020, 2633, 2727, 2966
Bme18I	GGWCC	4 cut(s)	461, 1738, 3181, 3311
BmeT110I	CYCGRG	1 cut(s)	2244
BmgT120I	GGNCC	8 cut(s)	461, 946, 1738, 2737, 2738, 3181, 3311, 3607
BmiI	GGNNCC	6 cut(s)	296, 1540, 2637, 2739, 2740, 3313
BmrFI	CCNGG	4 cut(s)	2020, 2633, 2727, 2966
BmrI	ACTGGG	3 cut(s)	1570, 2783, 4037
BmuI	ACTGGG	3 cut(s)	1570, 2783, 4037
BoxI	GACNNNNGTC	1 cut(s)	1628
BpiI	GAAGAC	1 cut(s)	1176
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpmI	CTGGAG	3 cut(s)	2175, 3411, 3987
Bpu10I	CCTNAGC	1 cut(s)	2410
Bpu1102I	GCTNAGC	1 cut(s)	2302
Bpu14I	TTCGAA	1 cut(s)	4069
BpuEI	CTTGAG	8 cut(s)	2382, 2553, 2802, 3398, 3680, 3693, 3883, 4381
BsaJI	CCNNGG	3 cut(s)	693, 2964, 3696
BsaWI	WCCGGW	3 cut(s)	30, 297, 3173
BsaXI	ACNNNNNCTCC	8 cut(s)	1507, 1537, 1834, 1864, 1930, 1960, 2173, 2203
Bsc4I	CCNNNNNNNGG	8 cut(s)	470, 699, 1037, 2025, 2402, 2711, 3604, 4461
Bse118I	RCCGGY	3 cut(s)	21, 30, 3173
Bse1I	ACTGG	9 cut(s)	757, 911, 1540, 1576, 2192, 2778, 3843, 3970, 4043
Bse21I	CCTNAGG	1 cut(s)	2157
Bse3DI	GCAATG	2 cut(s)	3598, 4437
BseBI	CCWGG	4 cut(s)	2020, 2633, 2727, 2966
BseDI	CCNNGG	3 cut(s)	693, 2964, 3696
BseGI	GGATG	7 cut(s)	91, 915, 1861, 2303, 3857, 3947, 4470
BseLI	CCNNNNNNNGG	8 cut(s)	470, 699, 1037, 2025, 2402, 2711, 3604, 4461
BseMI	GCAATG	2 cut(s)	3598, 4437
BseNI	ACTGG	9 cut(s)	757, 911, 1540, 1576, 2192, 2778, 3843, 3970, 4043
BseRI	GAGGAG	2 cut(s)	2071, 3272
BseSI	GKGCMC	2 cut(s)	2741, 4043
BseXI	GCAGC	7 cut(s)	911, 1038, 1876, 2158, 2318, 2340, 2684
BseYI	CCCAGC	3 cut(s)	800, 2537, 4253
BsgI	GTGCAG	2 cut(s)	918, 1037
Bsh1236I	CGCG	1 cut(s)	1606
BshFI	GGCC	9 cut(s)	25, 349, 523, 947, 956, 1514, 2739, 3608, 3684
BshNI	GGYRCC	1 cut(s)	1538
BshTI	ACCGGT	2 cut(s)	30, 3173
BsiHKAI	GWGCWC	3 cut(s)	192, 1499, 2616
BsiHKCI	CYCGRG	1 cut(s)	2244
BsiSI	CCGG	4 cut(s)	22, 31, 298, 3174
BslFI	GGGAC	2 cut(s)	1957, 3297
BslI	CCNNNNNNNGG	8 cut(s)	470, 699, 1037, 2025, 2402, 2711, 3604, 4461
BsmAI	GTCTC	4 cut(s)	1084, 2174, 2439, 4126
BsmFI	GGGAC	2 cut(s)	1957, 3297
BsmI	GAATGC	1 cut(s)	2912
BsnI	GGCC	9 cut(s)	25, 349, 523, 947, 956, 1514, 2739, 3608, 3684
BsoBI	CYCGRG	1 cut(s)	2244
Bsp119I	TTCGAA	1 cut(s)	4069
Bsp120I	GGGCCC	1 cut(s)	2737
Bsp1286I	GDGCHC	6 cut(s)	192, 1499, 2535, 2616, 2741, 4043
Bsp1720I	GCTNAGC	1 cut(s)	2302
BspACI	CCGC	3 cut(s)	1736, 2339, 2629
BspANI	GGCC	9 cut(s)	25, 349, 523, 947, 956, 1514, 2739, 3608, 3684
BspFNI	CGCG	1 cut(s)	1606
BspHI	TCATGA	1 cut(s)	2931
BspLI	GGNNCC	6 cut(s)	296, 1540, 2637, 2739, 2740, 3313
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	7 cut(s)	187, 1218, 2039, 2630, 2643, 3687, 4364
BspQI	GCTCTTC	2 cut(s)	2193, 2604
BspT104I	TTCGAA	1 cut(s)	4069
BspT107I	GGYRCC	1 cut(s)	1538
BspTI	CTTAAG	2 cut(s)	289, 584
BsrDI	GCAATG	2 cut(s)	3598, 4437
BsrFI	RCCGGY	3 cut(s)	21, 30, 3173
BsrI	ACTGG	9 cut(s)	757, 911, 1540, 1576, 2192, 2778, 3843, 3970, 4043
BssAI	RCCGGY	3 cut(s)	21, 30, 3173
BssECI	CCNNGG	3 cut(s)	693, 2964, 3696
BssT1I	CCWWGG	1 cut(s)	3696
Bst2UI	CCWGG	4 cut(s)	2020, 2633, 2727, 2966
Bst6I	CTCTTC	7 cut(s)	2193, 2276, 2604, 3075, 3408, 3518, 4275
BstAFI	CTTAAG	2 cut(s)	289, 584
BstAPI	GCANNNNNTGC	2 cut(s)	599, 4211
BstBI	TTCGAA	1 cut(s)	4069
BstENI	CCTNNNNNAGG	3 cut(s)	2400, 2709, 4459
BstF5I	GGATG	7 cut(s)	91, 915, 1861, 2303, 3857, 3947, 4470
BstFNI	CGCG	1 cut(s)	1606
BstH2I	RGCGCY	3 cut(s)	895, 3089, 3153
BstHHI	GCGC	6 cut(s)	894, 1599, 3088, 3152, 3672, 3765
BstMAI	GTCTC	4 cut(s)	1084, 2174, 2439, 4126
BstNI	CCWGG	4 cut(s)	2020, 2633, 2727, 2966
BstPAI	GACNNNNGTC	1 cut(s)	1628
BstSCI	CCNGG	4 cut(s)	2018, 2631, 2725, 2964
BstSFI	CTRYAG	2 cut(s)	3993, 4020
BstSLI	GKGCMC	2 cut(s)	2741, 4043
BstUI	CGCG	1 cut(s)	1606
BstV1I	GCAGC	7 cut(s)	911, 1038, 1876, 2158, 2318, 2340, 2684
BstV2I	GAAGAC	1 cut(s)	1176
BstX2I	RGATCY	4 cut(s)	1210, 2044, 2635, 3692
BstXI	CCANNNNNNTGG	1 cut(s)	2446
BstYI	RGATCY	4 cut(s)	1210, 2044, 2635, 3692
Bsu36I	CCTNAGG	1 cut(s)	2157
BsuRI	GGCC	9 cut(s)	25, 349, 523, 947, 956, 1514, 2739, 3608, 3684
BtgZI	GCGATG	1 cut(s)	945
BtsCI	GGATG	7 cut(s)	91, 915, 1861, 2303, 3857, 3947, 4470
BtsI	GCAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	437
CaiI	CAGNNNCTG	2 cut(s)	3721, 3965
CciI	TCATGA	1 cut(s)	2931
CfoI	GCGC	6 cut(s)	894, 1599, 3088, 3152, 3672, 3765
Cfr10I	RCCGGY	3 cut(s)	21, 30, 3173
Cfr13I	GGNCC	8 cut(s)	461, 946, 1738, 2737, 2738, 3181, 3311, 3607
CseI	GACGC	2 cut(s)	1618, 1785
Csp6I	GTAC	6 cut(s)	488, 914, 1304, 2902, 3003, 4016
CspAI	ACCGGT	2 cut(s)	30, 3173
CviQI	GTAC	6 cut(s)	488, 914, 1304, 2902, 3003, 4016
DraI	TTTAAA	3 cut(s)	102, 1620, 2098
EaeI	YGGCCR	1 cut(s)	3682
Eam1104I	CTCTTC	7 cut(s)	2193, 2276, 2604, 3075, 3408, 3518, 4275
EarI	CTCTTC	7 cut(s)	2193, 2276, 2604, 3075, 3408, 3518, 4275
EciI	GGCGGA	1 cut(s)	2618
Eco130I	CCWWGG	1 cut(s)	3696
Eco24I	GRGCYC	2 cut(s)	2535, 2741
Eco32I	GATATC	2 cut(s)	1681, 3265
Eco47I	GGWCC	4 cut(s)	461, 1738, 3181, 3311
Eco47III	AGCGCT	1 cut(s)	3151
Eco57I	CTGAAG	6 cut(s)	214, 225, 2390, 2628, 3432, 3807
Eco81I	CCTNAGG	1 cut(s)	2157
Eco88I	CYCGRG	1 cut(s)	2244
EcoNI	CCTNNNNNAGG	3 cut(s)	2400, 2709, 4459
EcoO109I	RGGNCCY	1 cut(s)	2738
EcoRI	GAATTC	3 cut(s)	380, 3123, 4347
EcoRII	CCWGG	4 cut(s)	2018, 2631, 2725, 2964
EcoRV	GATATC	2 cut(s)	1681, 3265
EcoT14I	CCWWGG	1 cut(s)	3696
EcoT22I	ATGCAT	2 cut(s)	1327, 2842
EcoT38I	GRGCYC	2 cut(s)	2535, 2741
ErhI	CCWWGG	1 cut(s)	3696
FalI	AAGNNNNNCTT	6 cut(s)	3012, 3044, 3876, 3908, 4225, 4257
FaqI	GGGAC	2 cut(s)	1957, 3297
FauNDI	CATATG	4 cut(s)	1316, 1720, 2262, 4315
FbaI	TGATCA	2 cut(s)	3066, 3232
FblI	GTMKAC	2 cut(s)	4186, 4364
Fnu4HI	GCNGC	7 cut(s)	900, 1052, 1890, 2147, 2307, 2354, 2698
FokI	GGATG	7 cut(s)	98, 922, 1868, 2310, 3844, 3954, 4477
FriOI	GRGCYC	2 cut(s)	2535, 2741
Fsp4HI	GCNGC	7 cut(s)	900, 1052, 1890, 2147, 2307, 2354, 2698
FspBI	CTAG	8 cut(s)	627, 699, 1359, 1437, 3057, 3120, 3188, 3198
FspI	TGCGCA	1 cut(s)	3671
GlaI	GCGC	6 cut(s)	893, 1598, 3087, 3151, 3671, 3764
GluI	GCNGC	7 cut(s)	900, 1052, 1890, 2147, 2307, 2354, 2698
GsaI	CCCAGC	3 cut(s)	804, 2541, 4257
GsuI	CTGGAG	3 cut(s)	2175, 3411, 3987
HaeII	RGCGCY	3 cut(s)	895, 3089, 3153
HaeIII	GGCC	9 cut(s)	25, 349, 523, 947, 956, 1514, 2739, 3608, 3684
HapII	CCGG	4 cut(s)	22, 31, 298, 3174
HgaI	GACGC	2 cut(s)	1618, 1785
HhaI	GCGC	6 cut(s)	894, 1599, 3088, 3152, 3672, 3765
Hin6I	GCGC	6 cut(s)	892, 1597, 3086, 3150, 3670, 3763
HinP1I	GCGC	6 cut(s)	892, 1597, 3086, 3150, 3670, 3763
HincII	GTYRAC	5 cut(s)	558, 1713, 2598, 4062, 4187
HindII	GTYRAC	5 cut(s)	558, 1713, 2598, 4062, 4187
HindIII	AAGCTT	5 cut(s)	335, 1223, 2372, 3726, 3890
HpaI	GTTAAC	1 cut(s)	4062
HpaII	CCGG	4 cut(s)	22, 31, 298, 3174
HphI	GGTGA	6 cut(s)	20, 1347, 1781, 2384, 3489, 4037
Hpy99I	CGWCG	1 cut(s)	1779
HpyCH4IV	ACGT	8 cut(s)	554, 1073, 1957, 2862, 3494, 3831, 4037, 4419
HpySE526I	ACGT	8 cut(s)	554, 1073, 1957, 2862, 3494, 3831, 4037, 4419
HspAI	GCGC	6 cut(s)	892, 1597, 3086, 3150, 3670, 3763
KroI	GCCGGC	1 cut(s)	21
KroNI	GCCGGC	1 cut(s)	23
Ksp22I	TGATCA	2 cut(s)	3066, 3232
KspAI	GTTAAC	1 cut(s)	4062
LguI	GCTCTTC	2 cut(s)	2193, 2604
LmnI	GCTCC	5 cut(s)	1243, 1265, 2069, 2705, 4426
Lsp1109I	GCAGC	7 cut(s)	911, 1038, 1876, 2158, 2318, 2340, 2684
MaeI	CTAG	8 cut(s)	627, 699, 1359, 1437, 3057, 3120, 3188, 3198
MaeII	ACGT	8 cut(s)	554, 1073, 1957, 2862, 3494, 3831, 4037, 4419
MflI	RGATCY	4 cut(s)	1210, 2044, 2635, 3692
MhlI	GDGCHC	6 cut(s)	192, 1499, 2535, 2616, 2741, 4043
MlsI	TGGCCA	1 cut(s)	3684
MluI	ACGCGT	1 cut(s)	1604
MluNI	TGGCCA	1 cut(s)	3684
MlyI	GAGTC	6 cut(s)	64, 617, 717, 1745, 1939, 2929
MmeI	TCCRAC	3 cut(s)	1404, 1838, 2452
Mox20I	TGGCCA	1 cut(s)	3684
Mph1103I	ATGCAT	2 cut(s)	1327, 2842
MroNI	GCCGGC	1 cut(s)	21
MroXI	GAANNNNTTC	4 cut(s)	1045, 2679, 3024, 3345
MscI	TGGCCA	1 cut(s)	3684
MslI	CAYNNNNRTG	4 cut(s)	1767, 2444, 3940, 4197
Msp20I	TGGCCA	1 cut(s)	3684
MspA1I	CMGCKG	2 cut(s)	1492, 2388
MspCI	CTTAAG	2 cut(s)	289, 584
MspI	CCGG	4 cut(s)	22, 31, 298, 3174
MspR9I	CCNGG	4 cut(s)	2020, 2633, 2727, 2966
Mva1269I	GAATGC	1 cut(s)	2912
MvaI	CCWGG	4 cut(s)	2020, 2633, 2727, 2966
MvnI	CGCG	1 cut(s)	1606
NaeI	GCCGGC	1 cut(s)	23
NdeI	CATATG	4 cut(s)	1316, 1720, 2262, 4315
NgoMIV	GCCGGC	1 cut(s)	21
NlaIV	GGNNCC	6 cut(s)	296, 1540, 2637, 2739, 2740, 3313
NmuCI	GTSAC	6 cut(s)	609, 685, 1743, 2390, 2882, 3495
NsbI	TGCGCA	1 cut(s)	3671
NsiI	ATGCAT	2 cut(s)	1327, 2842
NspV	TTCGAA	1 cut(s)	4069
PaeI	GCATGC	3 cut(s)	2004, 3670, 4433
PagI	TCATGA	1 cut(s)	2931
PaqCI	CACCTGC	1 cut(s)	437
PciI	ACATGT	3 cut(s)	392, 2752, 4181
PciSI	GCTCTTC	2 cut(s)	2193, 2604
PctI	GAATGC	1 cut(s)	2912
PdiI	GCCGGC	1 cut(s)	23
PdmI	GAANNNNTTC	4 cut(s)	1045, 2679, 3024, 3345
PfeI	GAWTC	9 cut(s)	737, 1788, 2321, 2591, 3194, 3488, 3515, 3718, 4238
PflMI	CCANNNNNTGG	2 cut(s)	1037, 2025
PfoI	TCCNGGA	1 cut(s)	2725
PinAI	ACCGGT	2 cut(s)	30, 3173
PkrI	GCNGC	7 cut(s)	901, 1053, 1891, 2148, 2308, 2355, 2699
PleI	GAGTC	6 cut(s)	63, 616, 716, 1745, 1939, 2929
PpsI	GAGTC	6 cut(s)	63, 616, 716, 1745, 1939, 2929
PscI	ACATGT	3 cut(s)	392, 2752, 4181
PshAI	GACNNNNGTC	1 cut(s)	1628
PshBI	ATTAAT	2 cut(s)	2459, 3741
PsiI	TTATAA	2 cut(s)	1550, 3590
Psp1406I	AACGTT	1 cut(s)	3831
Psp6I	CCWGG	4 cut(s)	2018, 2631, 2725, 2964
PspFI	CCCAGC	3 cut(s)	800, 2537, 4253
PspGI	CCWGG	4 cut(s)	2018, 2631, 2725, 2964
PspN4I	GGNNCC	6 cut(s)	296, 1540, 2637, 2739, 2740, 3313
PspOMI	GGGCCC	1 cut(s)	2737
PspPI	GGNCC	8 cut(s)	461, 946, 1738, 2737, 2738, 3181, 3311, 3607
PstNI	CAGNNNCTG	2 cut(s)	3721, 3965
PsuI	RGATCY	4 cut(s)	1210, 2044, 2635, 3692
PvuII	CAGCTG	2 cut(s)	1492, 2388
RsaI	GTAC	6 cut(s)	489, 915, 1305, 2903, 3004, 4017
RsaNI	GTAC	6 cut(s)	488, 914, 1304, 2902, 3003, 4016
RseI	CAYNNNNRTG	4 cut(s)	1767, 2444, 3940, 4197
SalI	GTCGAC	1 cut(s)	4185
SapI	GCTCTTC	2 cut(s)	2193, 2604
SatI	GCNGC	7 cut(s)	900, 1052, 1890, 2147, 2307, 2354, 2698
Sau96I	GGNCC	8 cut(s)	461, 946, 1738, 2737, 2738, 3181, 3311, 3607
ScaI	AGTACT	1 cut(s)	2903
SchI	GAGTC	6 cut(s)	64, 617, 717, 1745, 1939, 2929
ScrFI	CCNGG	4 cut(s)	2020, 2633, 2727, 2966
SduI	GDGCHC	6 cut(s)	192, 1499, 2535, 2616, 2741, 4043
SfcI	CTRYAG	2 cut(s)	3993, 4020
SfiI	GGCCNNNNNGGCC	1 cut(s)	953
SfuI	TTCGAA	1 cut(s)	4069
SinI	GGWCC	4 cut(s)	461, 1738, 3181, 3311
SmiMI	CAYNNNNRTG	4 cut(s)	1767, 2444, 3940, 4197
SphI	GCATGC	3 cut(s)	2004, 3670, 4433
SsiI	CCGC	3 cut(s)	1736, 2339, 2629
SspI	AATATT	4 cut(s)	1833, 2457, 2650, 4210
SspMI	CTAG	8 cut(s)	627, 699, 1359, 1437, 3057, 3120, 3188, 3198
StyD4I	CCNGG	4 cut(s)	2018, 2631, 2725, 2964
StyI	CCWWGG	1 cut(s)	3696
TaiI	ACGT	8 cut(s)	557, 1076, 1960, 2865, 3497, 3834, 4040, 4422
TaqI	TCGA	8 cut(s)	1002, 1774, 3217, 3286, 3518, 3986, 4069, 4186
TaqII	GACCGA	1 cut(s)	156
TatI	WGTACW	2 cut(s)	2901, 3002
TfiI	GAWTC	9 cut(s)	737, 1788, 2321, 2591, 3194, 3488, 3515, 3718, 4238
TseFI	GTSAC	6 cut(s)	609, 685, 1743, 2390, 2882, 3495
TseI	GCWGC	7 cut(s)	899, 1051, 1889, 2146, 2306, 2353, 2697
Tsp45I	GTSAC	6 cut(s)	609, 685, 1743, 2390, 2882, 3495
Van91I	CCANNNNNTGG	2 cut(s)	1037, 2025
Vha464I	CTTAAG	2 cut(s)	289, 584
VpaK11BI	GGWCC	4 cut(s)	461, 1738, 3181, 3311
VspI	ATTAAT	2 cut(s)	2459, 3741
XagI	CCTNNNNNAGG	3 cut(s)	2400, 2709, 4459
XapI	RAATTY	9 cut(s)	380, 1194, 1845, 2078, 2090, 2560, 3123, 3466, 4347
XbaI	TCTAGA	1 cut(s)	3119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4072
XmiI	GTMKAC	2 cut(s)	4186, 4364
XmnI	GAANNNNTTC	4 cut(s)	1045, 2679, 3024, 3345
XspI	CTAG	8 cut(s)	627, 699, 1359, 1437, 3057, 3120, 3188, 3198
ZrmI	AGTACT	1 cut(s)	2903
Zsp2I	ATGCAT	2 cut(s)	1327, 2842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.