Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003903

Physical Location & Seq

Genomic Coordinates Forward (+)

6373300 .. 6384207

Gene Structure 10908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5022 bp

ATGGGTAGAAGGAAGCAAAGCCGGCCTCACCGGTCAGGTGGGATTGTATTAGAGAGTCAAGCAACTGCTGGCAGGGGAGAATTGGATGAGGGGAGGCTTTTAAATGGAGAAACGCAAAAGAATGACATAGATGAAGTTGATAGACCGTATTTTGTGGAAGTTGATCGGTCTAATTGGGGATCAGATGAGCACCTTGATATTGCTGAAGTGGTTTTAACAGATTTGACTTTCAGAGAAGGGTTTTGCAGTGATGTTGTTAGTGGGGGTTTGAATTGCGATAGTTACTCCTTAAGGTTCCGGTTATCTAATGTGAAGGAGTTCATTGGTCGTATTAAGCTTGGTCATTGGCCTTTGTTGTCCTCTGCTGATATATCTTTGGAATTCGTAAAAACATGTTCAAGCGAGTATATGGATATGGACATGGACAAGGACACATGCTCAGTAATCTTGTCAGGGAGTTTTGATGGACCAGATGAAGGTATTTCTGGTCTAGTACACTTGGCAAGTTTGAAGTTTATGACACTGAGGCCAGCTCTGTCCATTGGGTTTGTGAATGATACATCAACCATCAGGGTCAGGGTGGAGATACTTAAGAGTGCATTTAATGCTTGTGAGTCACTTCTGGACAATACTAGGCAAGTGTGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACACCCAGAAGTAGTGACTTCTGAGGCTAGGTATGGAGTCAGTAGATCAACAGACATGGAAATTGATTCGCATACTGACACTGGACATGCTAATTCAAATCATAGTAAACATGCAAGGTTTGATGTTGCTGGGTTCTATGAAGCCATTAAACCCTCAAAAGCAGATGCAATGCTTCAAGACATCCTGCCTGATTTGCTTCCTGAATTGAAACCATATCAGCGCCGTGCAGCTTACTGGATGGTACAGAGGGAGAAAAGCGATGCACAAAGTCTAGCCCAAGAGGCCAAAAGTCAGTTCATGTTGCCTTTATGTTTGCCCTTGCAATTTCTCGACAGATGTTCAAAAATGTTCTACAACCCATTCAGTGGAAATGTTTCGCTGCACCAAGAGCATTTTTCAATGTACGTCTCTGGTGGTATTCTTGCTGATGAGATGGGCATGGGCAAAACTGTTGAACTTCTCGCTTGCATCTTTGCTCATCAGAAGTCAGCAGATGAAGACCCCATATTTGCTGATGCTGAAATTCAAGATACCGAGGATCTGAAAATAAATCTTAAAAGATTAAAAAGGGAGCGAGTTGAATGTATATGTGGAGCTGTGAGTGAAAGTATCAGATACAGAGGACTATGGGTACAGTGTGACATATGTGATGCATGGCAACATGCCGATTGTGTGGGCTATTCACCTAGAGGAAAGACTATAAAATCCAACGATGCTTCTAACGAAAAAGAACATGATGAAAGTTCGGTGGTTAAGAAGTATACTAGAGAGAAGAATACAACAACAATAGATGTGAGAGATGAGGAATATATATGCCAGCTGTGCTCAGAACTGATACAGGCAACTAATGCTCCTGTTCCTACTGGAGCCACTCTTATAATCTGTCCAGCTTCTATATCTCCCCAGTGGTATTCTGAAATTATGCGCCATACGCGTTCAGGTTCTTTAAAGATTTGCGTCTATGAAGGTGTGAGAGAGGCGTCTTTTTCAAACACATCTGTAATTGATATCAGTGAACTCATCAGTGCTGACATTGTGTTGACAACATATGATGTGCTTAAAGAGGACCTGTCACATGACTCTGATAGGCATGAAGGTGATCGACGCTTAATGAGATTCCAAAAGAGATACCCTGTTGTTCCAACTATTCTTACCAGAATATTCTGGTGGAGAATTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGCTGGTGCTGCAACAGAAATGGCTATGCGACTGTATGCAAAGCATCGTTGGTGCATAACGGGGACTCCTATACAACGTAAACTTGATGACTTATATGGACTTCTACGGTTTCTTAAAGCATGCCCTTTCAATGCTTCCAGGTGGTGGATTGAAGTTATACGAGATCCATATGAGAGGAGAGATGCAGGAGCTATGGAATTTACACATAAATTCTTTAAAGAAATTATGTGGCGATCTTCAAAAGTCCATGTTGCAGATGAGTTGCAGCTTCCACCTCAGGAAGAATGTCTCTCTTGGCTCACTTTATCTCCAGTTGAAGAGCATTTTTACCAGAGGCAACACGAAACTTGTGTGAGTTATGCCCGAGAAGTCATTGAACGTATGAAAGATGATATTATGAAGAGAAAAGTTGGAGGATGCGCAGCAGCTAAATCATCAGATTCTTTCATCACACATGCGGAGGCAGGAAAGCTGCTGAACACACTTCTGAAGCTTCGCCAAGCCAGCTGTCACCCTCAAGTAGGAAGCTCAGGACTGCGTTCTCTCCAACAGTCTCCCATGACTATGGAGGAAATATTAATGGTTCTTGTAAGTAAAACCAAGATAGAAGGAGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTTAATGGGCTCGCTGGGATAGCTGTAATTGAGCAAAATTTTACTCAAGCTGTGTCACTGTATAAGGAATCATTGACTTTAGCTGAAGAGCACACTGAGGATTTCCGCCTGGATCCTTTGTTGAGTATTCACATTCATCATAATCTTGCCGAAATACTCCCATTAGCAACAAGCTGCTCCCCTTCAAAAGGACAACATATTCCTGGAAAAATGGGCCCCTGTGATGGACATGTAGCAAAGAGGCGAAAACTGGGTGGGGAAGATAACTCATCAGGGAATGACTTATCTATTGCCCAAGAATATAATAACGTGTCACATGCATCATATAGTTCCTTCACTGACGTATCTTTGAGAACAGTCTGTGACAATCTTAAACAAAAGTACTTATCTGCATTCAGTTCAAAGTTATTCATGACTCAGCAAGAGTTTAAGAAGTCTTACACCCAGGTTTGTAGCACAATTAGTGAGATAAAAGATGTAAGTACAGTCTGGTGGTTGGAAGCCCTTCTTCATGCTGAAAAGAATAATGACATTTCTAGTCTGTTGATCAGAAAGATTGAAGAGGCGCTCATAGGAACTCTGAACAATTCAAAGTCATCTAGAATTCCATCTCGTTTACGAAGCATAAGCGCTCTAAAGTATCATATGCAGACCGGTTTGGACCAACTAGAAGAATCTAGGAAACTGTTACTTGATCGACTTTTAGAAATTGATCAGACAATGGAGAAGCCAAAAGAGGAGGATATCCAGCGTGTGAGATACTGTCGAAATTGCAAAGCAAACGATGGTGGTCCCTTATGTGTTCTTTGTGAAGTGGATGAATTATTTCGGGGTTATGAAGCAAGGCTCTTTCGTCTTGAGAAAGTATCTGGAGGGGTTGCTACCTCTGCTGAAGAGGCTGTGGATTTGCAGAAGAAGAACTCTGAACTTAATCGTTTCTATCAGAATTTGTCACAGCCAATTAAGGATTCAACGTCACCCAAATCTAATCAGGAATCGAAGAAGAGAGATGTTGGAAAAGTTGTGGTTTCAAAATCCCCATCTGAATTAGAGGTTGTTCTTGGAGTTATAAAAAGCCATTGCAAGGCCCATTTAGGAAAGGAAGGTATATCAGAAGCTACCAAGCACCTACACATTCTTGAGGGCATGCGCAAGGAGTATGGCCATGCAAGATCCTTGGCAATAGCTCAAGCTCAGATTCTGCAAGCTTATGATGAAATTAATATGGCAACTACAAGGTTGCGCCTGAGTGAAGATCAGAATGATAAATCTCTTGATGCATTAAGTGAAGATGAATTACCTTCAGCTAACGTTTTATACACCAGTGAAAAGTTCGCATCGTTGAGCTTGTTGTCTTGTATAAAAGGGAAACTTCGTTATTTGAAGGGTTTGGTAGAAGCTAAACAAAAATTGCCATTTGGAAGTCCAAATCATTCCTCAGTAACTGAAAAGGAAGCCACCATATCGAAGTCTTCAGAACAGAGAAATGAATGCATGCCTACAGGTGATAAAGAAACGTGCCCAGTTTGTCAAGAACAGTTAACCATTCAAAAGATGGTTTTCCCTTGTGGACATCTTACTTGCTGTAAATGTTTATTTGCAATTACTGAGAGATTACTGAATGGGAAAAAGGTTCAAGATAAGTGGGTTAAATGCCCAACATGCCGACAGCACACTGATGTTGCAAATATTGCTTTTGCTGATGATGGACAAAGTGAATCTTGTGGTTCTGCTGGGCTTCATCCAATCCAAAGTCGTGAAGAGTGTGAAGCATCTATTATAGTTCAAGGTTCATACGGAACAAAGATTGAAGCAGTTACAAGAAGAATTCTGTGGATAAAGACTATAGATCCAGAGGCTAAAGTTCTTGTTTTTTCAAGCTGGAATGATGTCCTTGATGTATTGGAGCATGCCTTCATTGCTAATGGCATTACCTTTATAAGGATGAAAGGAGGAAGGAAATCACAAGTTGCCATTAGTGAATTTAAAGGAGAAAAGACAAGCTTAACAAGAAATCACAAGTTGCATGGCGGAAACCCAGAAGGAAGATCTATTCAAGTGTTGCTGCTCTTAATTCAACATGGAGCGAATGGCCTCAATCTGTTGGAAGCGAAGCATGTTATTCTTATCGAGCCGCTTCTCAATCCAGCAGCAGAAGCACAAGCCATCAGCAGGGTACACCGAATTGGACAGAAAAATAAGACCCTCGCTCATCGTTTCATAGTTAAGGGCACGGTTGAAGAGAGCATATACAAGCTCAACAAAAGCAGGAACAGCACTGCTTTCATTAGCGGAAACACAAAGAACCAAGATCAGCCCTTATTGACACTAAAAGACATGGAGGCCTTATTTTCAACGGTGCCATCATCAACTGTACCAGTGACTGATGAAAGGCCAACTGAAAGTGAAAGTTTAAGACATTTGCCACCTTCTATGGCTGCTGCCATTGCAGCTGAGAAGCGGCTGAAGGAGCAGCATTCATGCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C PHD SNF2_N zf-C3HC4

Protein Analysis

1673

Amino Acids

187.78

Weight (kDa)

6.46

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	298 - 802	6.7e-62	SNF2-related domain
SHPRH_helical-1st	PF21325	818 - 897	3e-24	E3 ubiquitin-protein ligase SHPRH, first helical domain
SHPRH_helical-2nd	PF21324	1005 - 1129	8.5e-07	E3 ubiquitin-protein ligase SHPRH, second helical domain
Helicase_C	PF00271	1453 - 1573	4.4e-08	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40770 AT2G40770 AT2G40770
fragaria_vesca	FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110
malus_domestica	MD01G1169300.v1.1
prunus_persica	Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1
pyrus_communis	pycom01g18200
rosa_chinensis	RchiOBHm_Chr1g0372551
rosa_laevigata	RLG00000026892
rosa_multiflora	Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284860
rosa_rugosa	Rorug01G0372700
rosa_samantha	Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800
rosa_wichuraiana	Rw1G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1556, 3599, 4469
Acc16I	TGCGCA	2 cut(s)	2308, 3680
AccB1I	GGYRCC	1 cut(s)	4888
AccB7I	CCANNNNNTGG	2 cut(s)	1043, 2031
AccI	GTMKAC	1 cut(s)	1439
AccII	CGCG	1 cut(s)	1612
AciI	CCGC	6 cut(s)	2345, 2635, 4560, 4664, 4821, 4990
AclI	AACGTT	1 cut(s)	3840
AclWI	GGATC	7 cut(s)	187, 1224, 2045, 2636, 2649, 3696, 4373
AcoI	YGGCCR	1 cut(s)	3691
AcuI	CTGAAG	7 cut(s)	225, 2396, 2634, 3441, 3816, 3987, 5015
AcyI	GRCGYC	1 cut(s)	1658
AfaI	GTAC	8 cut(s)	495, 921, 1082, 1311, 2912, 3013, 4707, 4905
AfeI	AGCGCT	1 cut(s)	3160
AfiI	CCNNNNNNNGG	9 cut(s)	476, 1043, 2031, 2408, 2717, 2753, 3613, 4470, 4701
AflII	CTTAAG	2 cut(s)	289, 590
AflIII	ACRYGT	4 cut(s)	392, 1610, 2758, 2838
AgeI	ACCGGT	2 cut(s)	30, 3182
AjnI	CCWGG	4 cut(s)	2024, 2637, 2731, 2973
AjuI	GAANNNNNNNTTGG	4 cut(s)	956, 988, 3481, 3513
Alw21I	GWGCWC	3 cut(s)	192, 1505, 2622
Alw26I	GTCTC	3 cut(s)	1090, 2180, 2445
AlwI	GGATC	7 cut(s)	187, 1224, 2045, 2636, 2649, 3696, 4373
AlwNI	CAGNNNCTG	3 cut(s)	3730, 3974, 4913
Ama87I	CYCGRG	1 cut(s)	2250
Aor51HI	AGCGCT	1 cut(s)	3160
ApaI	GGGCCC	1 cut(s)	2747
ArsI	GACNNNNNNTTYG	2 cut(s)	1169, 1201
AseI	ATTAAT	2 cut(s)	2465, 3750
AsiGI	ACCGGT	2 cut(s)	30, 3182
Asp700I	GAANNNNTTC	4 cut(s)	317, 1051, 3033, 3354
AspLEI	GCGC	7 cut(s)	900, 1605, 2309, 3097, 3161, 3681, 3774
AspS9I	GGNCC	7 cut(s)	467, 1744, 2743, 2744, 3190, 3320, 3616
AsuHPI	GGTGA	6 cut(s)	20, 1353, 1787, 2390, 3498, 4046
AvaI	CYCGRG	1 cut(s)	2250
AvaII	GGWCC	4 cut(s)	467, 1744, 3190, 3320
AxyI	CCTNAGG	1 cut(s)	2163
BaeGI	GKGCMC	3 cut(s)	2747, 4052, 4763
BaeI	ACNNNNGTAYC	2 cut(s)	2856, 2889
BalI	TGGCCA	1 cut(s)	3693
BamHI	GGATCC	1 cut(s)	2641
BanI	GGYRCC	1 cut(s)	4888
BanII	GRGCYC	2 cut(s)	2541, 2747
BarI	GAAGNNNNNNTAC	2 cut(s)	3810, 3842
BbsI	GAAGAC	2 cut(s)	1182, 3993
Bbv12I	GWGCWC	3 cut(s)	192, 1505, 2622
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	4 cut(s)	2026, 2639, 2733, 2975
BclI	TGATCA	2 cut(s)	3075, 3241
BcoDI	GTCTC	3 cut(s)	1090, 2180, 2445
BfmI	CTRYAG	2 cut(s)	4029, 4374
BfoI	RGCGCY	3 cut(s)	901, 3098, 3162
BfrI	CTTAAG	2 cut(s)	289, 590
BglI	GCCNNNNNGGC	1 cut(s)	959
BglII	AGATCT	1 cut(s)	4577
BmcAI	AGTACT	1 cut(s)	2912
Bme1390I	CCNGG	4 cut(s)	2026, 2639, 2733, 2975
Bme18I	GGWCC	4 cut(s)	467, 1744, 3190, 3320
BmeT110I	CYCGRG	1 cut(s)	2250
BmgT120I	GGNCC	7 cut(s)	467, 1744, 2743, 2744, 3190, 3320, 3616
BmiI	GGNNCC	7 cut(s)	296, 1546, 2643, 2745, 2746, 3322, 4890
BmrFI	CCNGG	4 cut(s)	2026, 2639, 2733, 2975
BmrI	ACTGGG	3 cut(s)	1576, 2789, 4046
BmuI	ACTGGG	3 cut(s)	1576, 2789, 4046
BpiI	GAAGAC	2 cut(s)	1182, 3993
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpmI	CTGGAG	3 cut(s)	1563, 2181, 3420
Bpu10I	CCTNAGC	1 cut(s)	2416
BpuEI	CTTGAG	5 cut(s)	2388, 2559, 3407, 3689, 3702
BsaHI	GRCGYC	1 cut(s)	1658
BsaJI	CCNNGG	3 cut(s)	1212, 2973, 3705
BsaWI	WCCGGW	3 cut(s)	30, 297, 3182
BsaXI	ACNNNNNCTCC	8 cut(s)	1513, 1543, 1840, 1870, 1936, 1966, 2179, 2209
Bsc4I	CCNNNNNNNGG	9 cut(s)	476, 1043, 2031, 2408, 2717, 2753, 3613, 4470, 4701
Bse118I	RCCGGY	3 cut(s)	21, 30, 3182
Bse1I	ACTGG	9 cut(s)	763, 917, 1546, 1582, 2198, 2784, 3852, 4052, 4907
Bse21I	CCTNAGG	1 cut(s)	2163
Bse3DI	GCAATG	4 cut(s)	852, 3607, 4446, 4974
BseBI	CCWGG	4 cut(s)	2026, 2639, 2733, 2975
BseDI	CCNNGG	3 cut(s)	1212, 2973, 3705
BseGI	GGATG	8 cut(s)	91, 858, 921, 1867, 2309, 3352, 4270, 4479
BseLI	CCNNNNNNNGG	9 cut(s)	476, 1043, 2031, 2408, 2717, 2753, 3613, 4470, 4701
BseMI	GCAATG	4 cut(s)	852, 3607, 4446, 4974
BseNI	ACTGG	9 cut(s)	763, 917, 1546, 1582, 2198, 2784, 3852, 4052, 4907
BseRI	GAGGAG	2 cut(s)	2077, 3281
BseSI	GKGCMC	3 cut(s)	2747, 4052, 4763
BseYI	CCCAGC	3 cut(s)	806, 2543, 4262
BsgI	GTGCAG	2 cut(s)	924, 1043
Bsh1236I	CGCG	1 cut(s)	1612
BshNI	GGYRCC	1 cut(s)	4888
BshTI	ACCGGT	2 cut(s)	30, 3182
BsiHKAI	GWGCWC	3 cut(s)	192, 1505, 2622
BsiHKCI	CYCGRG	1 cut(s)	2250
BsiSI	CCGG	4 cut(s)	22, 31, 298, 3183
BslFI	GGGAC	2 cut(s)	1963, 3306
BslI	CCNNNNNNNGG	9 cut(s)	476, 1043, 2031, 2408, 2717, 2753, 3613, 4470, 4701
BsmAI	GTCTC	3 cut(s)	1090, 2180, 2445
BsmBI	CGTCTC	1 cut(s)	1090
BsmFI	GGGAC	2 cut(s)	1963, 3306
BsmI	GAATGC	3 cut(s)	2921, 4025, 5005
BsoBI	CYCGRG	1 cut(s)	2250
Bsp120I	GGGCCC	1 cut(s)	2743
Bsp1286I	GDGCHC	7 cut(s)	192, 1505, 2541, 2622, 2747, 4052, 4763
BspACI	CCGC	6 cut(s)	2345, 2635, 4560, 4664, 4821, 4990
BspFNI	CGCG	1 cut(s)	1612
BspHI	TCATGA	2 cut(s)	2940, 5018
BspLI	GGNNCC	7 cut(s)	296, 1546, 2643, 2745, 2746, 3322, 4890
BspPI	GGATC	7 cut(s)	187, 1224, 2045, 2636, 2649, 3696, 4373
BspQI	GCTCTTC	2 cut(s)	2199, 2610
BspT107I	GGYRCC	1 cut(s)	4888
BspTI	CTTAAG	2 cut(s)	289, 590
BsrDI	GCAATG	4 cut(s)	852, 3607, 4446, 4974
BsrFI	RCCGGY	3 cut(s)	21, 30, 3182
BsrI	ACTGG	9 cut(s)	763, 917, 1546, 1582, 2198, 2784, 3852, 4052, 4907
BssAI	RCCGGY	3 cut(s)	21, 30, 3182
BssECI	CCNNGG	3 cut(s)	1212, 2973, 3705
BssNAI	GTATAC	1 cut(s)	1440
BssNI	GRCGYC	1 cut(s)	1658
BssT1I	CCWWGG	1 cut(s)	3705
Bst1107I	GTATAC	1 cut(s)	1440
Bst2UI	CCWGG	4 cut(s)	2026, 2639, 2733, 2975
Bst6I	CTCTTC	8 cut(s)	2199, 2282, 2610, 3084, 3417, 3527, 4284, 4764
BstACI	GRCGYC	1 cut(s)	1658
BstAFI	CTTAAG	2 cut(s)	289, 590
BstAPI	GCANNNNNTGC	3 cut(s)	605, 1526, 4220
BstENI	CCTNNNNNAGG	3 cut(s)	2406, 2715, 4468
BstF5I	GGATG	8 cut(s)	91, 858, 921, 1867, 2309, 3352, 4270, 4479
BstFNI	CGCG	1 cut(s)	1612
BstH2I	RGCGCY	3 cut(s)	901, 3098, 3162
BstHHI	GCGC	7 cut(s)	900, 1605, 2309, 3097, 3161, 3681, 3774
BstMAI	GTCTC	3 cut(s)	1090, 2180, 2445
BstNI	CCWGG	4 cut(s)	2026, 2639, 2733, 2975
BstSCI	CCNGG	4 cut(s)	2024, 2637, 2731, 2973
BstSFI	CTRYAG	2 cut(s)	4029, 4374
BstSLI	GKGCMC	3 cut(s)	2747, 4052, 4763
BstUI	CGCG	1 cut(s)	1612
BstV2I	GAAGAC	2 cut(s)	1182, 3993
BstX2I	RGATCY	6 cut(s)	1216, 2050, 2641, 3701, 4378, 4577
BstXI	CCANNNNNNTGG	1 cut(s)	2452
BstYI	RGATCY	6 cut(s)	1216, 2050, 2641, 3701, 4378, 4577
BstZ17I	GTATAC	1 cut(s)	1440
Bsu36I	CCTNAGG	1 cut(s)	2163
BtgZI	GCGATG	1 cut(s)	951
BtsCI	GGATG	8 cut(s)	91, 858, 921, 1867, 2309, 3352, 4270, 4479
BtsI	GCAGTG	2 cut(s)	253, 4806
CaiI	CAGNNNCTG	3 cut(s)	3730, 3974, 4913
CciI	TCATGA	2 cut(s)	2940, 5018
CfoI	GCGC	7 cut(s)	900, 1605, 2309, 3097, 3161, 3681, 3774
Cfr10I	RCCGGY	3 cut(s)	21, 30, 3182
Cfr13I	GGNCC	7 cut(s)	467, 1744, 2743, 2744, 3190, 3320, 3616
CseI	GACGC	3 cut(s)	1624, 1647, 1791
Csp6I	GTAC	8 cut(s)	494, 920, 1081, 1310, 2911, 3012, 4706, 4904
CspAI	ACCGGT	2 cut(s)	30, 3182
CspCI	CAANNNNNGTGG	2 cut(s)	4154, 4189
CviQI	GTAC	8 cut(s)	494, 920, 1081, 1310, 2911, 3012, 4706, 4904
DraI	TTTAAA	4 cut(s)	102, 1626, 2104, 4516
EaeI	YGGCCR	1 cut(s)	3691
Eam1104I	CTCTTC	8 cut(s)	2199, 2282, 2610, 3084, 3417, 3527, 4284, 4764
EarI	CTCTTC	8 cut(s)	2199, 2282, 2610, 3084, 3417, 3527, 4284, 4764
EciI	GGCGGA	2 cut(s)	2624, 4575
Eco130I	CCWWGG	1 cut(s)	3705
Eco147I	AGGCCT	1 cut(s)	4874
Eco24I	GRGCYC	2 cut(s)	2541, 2747
Eco32I	GATATC	2 cut(s)	1687, 3274
Eco47I	GGWCC	4 cut(s)	467, 1744, 3190, 3320
Eco47III	AGCGCT	1 cut(s)	3160
Eco57I	CTGAAG	7 cut(s)	225, 2396, 2634, 3441, 3816, 3987, 5015
Eco81I	CCTNAGG	1 cut(s)	2163
Eco88I	CYCGRG	1 cut(s)	2250
EcoNI	CCTNNNNNAGG	3 cut(s)	2406, 2715, 4468
EcoO109I	RGGNCCY	2 cut(s)	1744, 2744
EcoRI	GAATTC	3 cut(s)	380, 3132, 4356
EcoRII	CCWGG	4 cut(s)	2024, 2637, 2731, 2973
EcoRV	GATATC	2 cut(s)	1687, 3274
EcoT14I	CCWWGG	1 cut(s)	3705
EcoT22I	ATGCAT	4 cut(s)	1333, 2851, 3811, 4025
EcoT38I	GRGCYC	2 cut(s)	2541, 2747
ErhI	CCWWGG	1 cut(s)	3705
Esp3I	CGTCTC	1 cut(s)	1090
FalI	AAGNNNNNCTT	8 cut(s)	3021, 3053, 3885, 3917, 4234, 4266, 4517, 4549
FaqI	GGGAC	2 cut(s)	1963, 3306
FauNDI	CATATG	4 cut(s)	1322, 1726, 2056, 3174
FbaI	TGATCA	2 cut(s)	3075, 3241
FblI	GTMKAC	1 cut(s)	1439
FokI	GGATG	8 cut(s)	98, 845, 928, 1874, 2316, 3359, 4257, 4486
FriOI	GRGCYC	2 cut(s)	2541, 2747
FspI	TGCGCA	2 cut(s)	2308, 3680
GlaI	GCGC	7 cut(s)	899, 1604, 2308, 3096, 3160, 3680, 3773
GsaI	CCCAGC	3 cut(s)	810, 2547, 4266
GsuI	CTGGAG	3 cut(s)	1563, 2181, 3420
HaeII	RGCGCY	3 cut(s)	901, 3098, 3162
HapII	CCGG	4 cut(s)	22, 31, 298, 3183
HgaI	GACGC	3 cut(s)	1624, 1647, 1791
HhaI	GCGC	7 cut(s)	900, 1605, 2309, 3097, 3161, 3681, 3774
Hin1I	GRCGYC	1 cut(s)	1658
Hin6I	GCGC	7 cut(s)	898, 1603, 2307, 3095, 3159, 3679, 3772
HinP1I	GCGC	7 cut(s)	898, 1603, 2307, 3095, 3159, 3679, 3772
HincII	GTYRAC	2 cut(s)	1719, 4071
HindII	GTYRAC	2 cut(s)	1719, 4071
HindIII	AAGCTT	4 cut(s)	335, 2378, 3735, 4531
HpaI	GTTAAC	1 cut(s)	4071
HpaII	CCGG	4 cut(s)	22, 31, 298, 3183
HphI	GGTGA	6 cut(s)	20, 1353, 1787, 2390, 3498, 4046
Hpy99I	CGWCG	1 cut(s)	1785
HpyCH4IV	ACGT	8 cut(s)	1083, 1963, 2266, 2838, 2871, 3503, 3840, 4046
HpySE526I	ACGT	8 cut(s)	1083, 1963, 2266, 2838, 2871, 3503, 3840, 4046
Hsp92I	GRCGYC	1 cut(s)	1658
HspAI	GCGC	7 cut(s)	898, 1603, 2307, 3095, 3159, 3679, 3772
KroI	GCCGGC	1 cut(s)	21
KroNI	GCCGGC	1 cut(s)	23
Ksp22I	TGATCA	2 cut(s)	3075, 3241
KspAI	GTTAAC	1 cut(s)	4071
LguI	GCTCTTC	2 cut(s)	2199, 2610
LmnI	GCTCC	9 cut(s)	1249, 1271, 1534, 1544, 2075, 2711, 4435, 4613, 4999
MaeII	ACGT	8 cut(s)	1083, 1963, 2266, 2838, 2871, 3503, 3840, 4046
MflI	RGATCY	6 cut(s)	1216, 2050, 2641, 3701, 4378, 4577
MhlI	GDGCHC	7 cut(s)	192, 1505, 2541, 2622, 2747, 4052, 4763
MlsI	TGGCCA	1 cut(s)	3693
MluI	ACGCGT	1 cut(s)	1610
MluNI	TGGCCA	1 cut(s)	3693
MlyI	GAGTC	6 cut(s)	64, 623, 723, 1751, 1945, 2938
MmeI	TCCRAC	7 cut(s)	1410, 1844, 2278, 2458, 3006, 3523, 4614
Mox20I	TGGCCA	1 cut(s)	3693
Mph1103I	ATGCAT	4 cut(s)	1333, 2851, 3811, 4025
MroNI	GCCGGC	1 cut(s)	21
MroXI	GAANNNNTTC	4 cut(s)	317, 1051, 3033, 3354
MscI	TGGCCA	1 cut(s)	3693
MslI	CAYNNNNRTG	3 cut(s)	1773, 2450, 4206
Msp20I	TGGCCA	1 cut(s)	3693
MspA1I	CMGCKG	3 cut(s)	1498, 2394, 4982
MspCI	CTTAAG	2 cut(s)	289, 590
MspI	CCGG	4 cut(s)	22, 31, 298, 3183
MspR9I	CCNGG	4 cut(s)	2026, 2639, 2733, 2975
Mva1269I	GAATGC	3 cut(s)	2921, 4025, 5005
MvaI	CCWGG	4 cut(s)	2026, 2639, 2733, 2975
MvnI	CGCG	1 cut(s)	1612
NaeI	GCCGGC	1 cut(s)	23
NdeI	CATATG	4 cut(s)	1322, 1726, 2056, 3174
NgoMIV	GCCGGC	1 cut(s)	21
NlaIV	GGNNCC	7 cut(s)	296, 1546, 2643, 2745, 2746, 3322, 4890
NsbI	TGCGCA	2 cut(s)	2308, 3680
NsiI	ATGCAT	4 cut(s)	1333, 2851, 3811, 4025
PaeI	GCATGC	4 cut(s)	2010, 3679, 4027, 4442
PagI	TCATGA	2 cut(s)	2940, 5018
PceI	AGGCCT	1 cut(s)	4874
PciI	ACATGT	2 cut(s)	392, 2758
PciSI	GCTCTTC	2 cut(s)	2199, 2610
PctI	GAATGC	3 cut(s)	2921, 4025, 5005
PdiI	GCCGGC	1 cut(s)	23
PdmI	GAANNNNTTC	4 cut(s)	317, 1051, 3033, 3354
PfeI	GAWTC	9 cut(s)	743, 1794, 2327, 2597, 3203, 3497, 3524, 3727, 4247
PflMI	CCANNNNNTGG	2 cut(s)	1043, 2031
PfoI	TCCNGGA	1 cut(s)	2731
PinAI	ACCGGT	2 cut(s)	30, 3182
PleI	GAGTC	6 cut(s)	63, 622, 722, 1751, 1945, 2938
PpsI	GAGTC	6 cut(s)	63, 622, 722, 1751, 1945, 2938
PpuMI	RGGWCCY	1 cut(s)	1744
PscI	ACATGT	2 cut(s)	392, 2758
PshBI	ATTAAT	2 cut(s)	2465, 3750
PsiI	TTATAA	3 cut(s)	1556, 3599, 4469
Psp1406I	AACGTT	1 cut(s)	3840
Psp5II	RGGWCCY	1 cut(s)	1744
Psp6I	CCWGG	4 cut(s)	2024, 2637, 2731, 2973
PspFI	CCCAGC	3 cut(s)	806, 2543, 4262
PspGI	CCWGG	4 cut(s)	2024, 2637, 2731, 2973
PspN4I	GGNNCC	7 cut(s)	296, 1546, 2643, 2745, 2746, 3322, 4890
PspOMI	GGGCCC	1 cut(s)	2743
PspPI	GGNCC	7 cut(s)	467, 1744, 2743, 2744, 3190, 3320, 3616
PspPPI	RGGWCCY	1 cut(s)	1744
PstNI	CAGNNNCTG	3 cut(s)	3730, 3974, 4913
PsuI	RGATCY	6 cut(s)	1216, 2050, 2641, 3701, 4378, 4577
PvuII	CAGCTG	3 cut(s)	1498, 2394, 4982
RsaI	GTAC	8 cut(s)	495, 921, 1082, 1311, 2912, 3013, 4707, 4905
RsaNI	GTAC	8 cut(s)	494, 920, 1081, 1310, 2911, 3012, 4706, 4904
RseI	CAYNNNNRTG	3 cut(s)	1773, 2450, 4206
SapI	GCTCTTC	2 cut(s)	2199, 2610
Sau96I	GGNCC	7 cut(s)	467, 1744, 2743, 2744, 3190, 3320, 3616
ScaI	AGTACT	1 cut(s)	2912
SchI	GAGTC	6 cut(s)	64, 623, 723, 1751, 1945, 2938
ScrFI	CCNGG	4 cut(s)	2026, 2639, 2733, 2975
SduI	GDGCHC	7 cut(s)	192, 1505, 2541, 2622, 2747, 4052, 4763
SfcI	CTRYAG	2 cut(s)	4029, 4374
SinI	GGWCC	4 cut(s)	467, 1744, 3190, 3320
SmiMI	CAYNNNNRTG	3 cut(s)	1773, 2450, 4206
SmlI	CTYRAG	7 cut(s)	289, 590, 2403, 2574, 3386, 3668, 3717
SmoI	CTYRAG	7 cut(s)	289, 590, 2403, 2574, 3386, 3668, 3717
SphI	GCATGC	4 cut(s)	2010, 3679, 4027, 4442
SseBI	AGGCCT	1 cut(s)	4874
SsiI	CCGC	6 cut(s)	2345, 2635, 4560, 4664, 4821, 4990
SspI	AATATT	3 cut(s)	1839, 2463, 4219
StuI	AGGCCT	1 cut(s)	4874
StyD4I	CCNGG	4 cut(s)	2024, 2637, 2731, 2973
StyI	CCWWGG	1 cut(s)	3705
TaiI	ACGT	8 cut(s)	1086, 1966, 2269, 2841, 2874, 3506, 3843, 4049
TaqI	TCGA	7 cut(s)	1008, 1780, 3226, 3295, 3527, 3995, 4659
TaqII	GACCGA	1 cut(s)	156
TatI	WGTACW	3 cut(s)	493, 2910, 3011
TauI	GCSGC	2 cut(s)	4666, 4993
TfiI	GAWTC	9 cut(s)	743, 1794, 2327, 2597, 3203, 3497, 3524, 3727, 4247
TspGWI	ACGGA	1 cut(s)	4341
Van91I	CCANNNNNTGG	2 cut(s)	1043, 2031
Vha464I	CTTAAG	2 cut(s)	289, 590
VpaK11BI	GGWCC	4 cut(s)	467, 1744, 3190, 3320
VspI	ATTAAT	2 cut(s)	2465, 3750
XagI	CCTNNNNNAGG	3 cut(s)	2406, 2715, 4468
XbaI	TCTAGA	1 cut(s)	3128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4081
XmiI	GTMKAC	1 cut(s)	1439
XmnI	GAANNNNTTC	4 cut(s)	317, 1051, 3033, 3354
ZrmI	AGTACT	1 cut(s)	2912
Zsp2I	ATGCAT	4 cut(s)	1333, 2851, 3811, 4025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.