Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003903

Physical Location & Seq

Genomic Coordinates Reverse (-)

47770345 .. 47780608

Gene Structure 10264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5046 bp

ATGTTTGTGTTGGAATTGTGGTTTGAGATGTATAGGATGGGTAGAAGGAAGCAAAACCGGCCTCACCGGTCAGGTGGGATTGTATTAGAGAGTCAAGCAACTGCGGGCAGGGGAGAATTTGATGAGGGGAGGTTTTTAAATGGAGAAACGCAAAAGAATGACATAGATGAAGTTGATAGACCGTATTTTGTGGAAGTTGATCGGTCTAATTGGGGATCAGATGAGCACCTTGATATTGCTGAAGTGGTTTTAACAGATTTGACTTTTGGAGAAGGGTTTTGCAGTGATGTTGTTAGAGGGGGTTTGAATTGCGATAGTTACTCCTTAAGGTTCCGGTTATCTAATGTGAAGGAGTTCATTGATCGTATTAAGCTTGGTCATTGGCCTTTGTTGTCCTCTGCTGATATATCTTTGGAATTCATTAAAACATGTTCAAGCGAGTATATGGACATGGACAAGGACACATGCTCAGTAATCTTGTCAGGGAGTTTTGATGGACCAGATGAAGGTATTTCTGGTCTGGTACACTTGGCAAGTTTGAAGTTTATGACACTGAGGCCAACTCTGTCAATTGGTTTTGTGAATGATACGTCAACCATCAGGGTCAGGGTGGAGATACTTAAGAGTGCATTTGATGCTTGTGAGTCACTTCTGGACAATTCTAGGCAAGTGTGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACACCCAGAAGTAGTGACTTCTGAGGCTAGGTATGGAGTCAGTAAATCAACAGACATGGAAATTGATTTGCATACTGACACTGGACATGCTAATTCAAATCATAGTCGACATGCAAGGTTTGATGTTGCTGGGTTCTATGAAGCCATTAAACCCTCAAAAGCAGATCCAATGCTTCAAGATGTCCTGCCTGATTTGCTTCCTGAATTGAAACCATATCAGCGCCGGGCAGCTTACTGGATGGTACAGAGGGAGAAATGCGATGCAGAAAGTCTGGCCCAAGAGGCCAAAAGTCAGTTTATGTCGCCTTTATGTTTGCCTTTGCAATTTCTCAACAGATGTTCAAAAATGTTCTACAACCCATTCAGTGGAAATGTTTCACTGCACCAAGAGCATTTTTCAACATACATCTCTGGTGGTATTCTTGCTGATGAGATGGGCATGGGGAAAACTGTTGAACTTCTCGCTTGCATCTTTGCTCATCAGAAGTCAGCAGATGAAGACCCCATATTTGCTGACGCTGAAATTCAAGATACCGAGGATCTGAAAATAAATCTTAAAAGATTAAAAATGGAGCGAGTTGAATGTATATGTGGAGCTGTGAGTGAAAGTAGCAGATACAGAGGACTATGGGTACAGTGTGACATATGTGATGCATGGCAACATGCCAATTGTGTGGGCTATTCTCCTAGAGGAAAGACTATAAAATCCAACGAGGCTTCTAACGAAAGAGAACATGAAAAGAGTTCGGTGGTTAAGAAGTATACTAGAAAGAAGAACACAACCACAATAGATGTGAGAGATGAGGAATATATATGCCAGCTGTGCTCAGAACTGATACAGGCCACTAATTCTCCTGTTGCTACTGGTGCCACTCTTATAATCTGTCCAGCTTCTATAATGCCCCAGTGGTATTCTGAAATTATGCGCCATACGCGTTCAGGTTCTCTAAAGACTTGCGTCTATGAAGGTGTGAGAGAGGCGTCTTTTTCAAACACATCTTTAATTGATATCAGTGAACTCATCAGTGCTGACATTGTGTTGACAACATATGATGTGCTTAAAGCGGACCTGTCGCATGACTCTGATAGGCATGAAGGTGATCGACGCTTAATGAGATTCCAAAAGAGATACCCTGTCGTTCCAACTACTCTAACCAGAATATTCTGGTGGAGAATTTGTTTGGATGAGGCTCAGATGGTGGAGAGTAATGCTGGTGCTGCAACAGAAATGGCTATGCGACTGTATGCGAAGCATCGTTGGTGCATAACGGGGACTCCTATACAACGAAAACTTGATGACTTATATGGACTTCTACGGTTTCTTAAAGCATGCCCTTTCAATGCTTCGAGGTGGTGGATTGAAGTTATACGAGATCCATATGAGAGGAGAGATGCAGGAGCTATGGAATTTACTCATAAATTCTTTAAAGAAATCATGTGGCGATCTTCAAAAGTGCATGTTGCAGATGAGTTGCAGCTTCCACCTCAGGAAGAATGTCTCTCTTGGCTGACTTTATCTCCAGTTGAAGAGCATTTTTACCAGAGGCAACATGAAACTTGTGTGAGTTATGCCCGAGAAGTCATTGAAAGTTTGAAAGATGATATTATGAAGAGAAAAGTCGGAGGATGCTCAGCAGCTAAATCATCAGATTCTTTCATCACACATGCGGAGGCAGGAAAGCTGCTGAACACACTTCTAAAGCTTCGCCAAGCCAGCTGTCACCCTCAAGTAGGAAGCTCAGGCCTGCGTTCTCTCCAACAGTCTCCCATGACTATGGAGGAAATATTGATGGTTCTTGTAAGTAAAACGAAGATAGAAGGAGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTTAATGGGCTCGCTGGGATAGCTGTAATTGAGCAAAATTTTACTCAAGCTGTATCACTGTATAAGGAATCGTTGACTTTAGCTGAAGAGCACGCTGAGGATTTCCGCTTGGATCCTTTGTTGAGTATTCACATTCATCATAATCTTGCTGAAATACTCCCATTAGCAACAAGCTGCTCCCCTTCAAAAGCAGAACATATTCCTGGGACAATGGGCCCCTGTGACGAACATGTAGCGAAGAGGCGAAAACTGAGTGGGGAAGATAACTCATCAGAGAATGACTTTTCTATTGCCCAAGAATATAATAACGTGTCCAATGCATCGTGTACTTCCTTCACTGATGTATCTTTGAGAACAATCTGTGGCAATCTTAAACAAAAGTACTTATCTGCATTCAGTTCAAAGTTAATCATGACTCAGCAAGAGTTTAAGAAGTCTTACACCCAGGTTTGTAGCACAATTAGTGAGATGAAAGATGTAAGTACAGTTTGGTGGTTGGAAGCTCTTCTTCATGCTGAAAAGAATAGTGACATTTCTAGTCTCTTGATCAGAAAGATTGAAGAGGCGCTCATAGGAACTCTAAACAATTCAAAGTCATCCAAAATTCCATCTCGTTTACGAAGCATAAGCGCTCTAAAGTATCATATGCAGACCGGTTTGGACCAACTAGAAGAATCTAGAAAAATATTACTTGATCGACTTTTAGAAATTGATCAGACAATGGAGAAGCCGAAAGAGGAGGATATCCAGCGTGTGAGATACTGTCGAAATTGCAAAGCTAACGATGGTGGTCCCTTATGTGTTCTTTGTGAAGTAGATGAATTATTTCGGGGTTATGAAGCAAGGCTCTTTCGTCTTGAGAAAGTATCTGGAGGGATTGCTACCTCTGCTGAAGAGGCTGTGGATTTGCAGAAGAAGAACTCTGCACTTAATCGTTTCTATCAGAATTTGTCACAGCCAATTAAGGATTCAACATCACCCAAATCTAATCAAGAATCAAAGAAGAGAGATGTTGGAAAAGTTGTGGTTTCAAAATCCCCATCTGAATTAGAGGTTGTTCTTGGAGTTATAAAAAGCCATTGCAAGGCCCATCTAGGAAAGGAAGGTATATCAGAAGCTACCAAGCACTTACACATTCTGGAGGGCATGCGCAAGGAGTATGGCCATGCAAGATCCTTGGCAATAGCTCAAGCTCAGATTCTGCAAGCCTATGATGAAATTAATATGGCAACTACACGGTTGCGCTTGAGTGAAGATGAGAATGATAAATCTCTTGATGCATTAAGTGAAGATGAATTACCTTCAGCTAATGTTTTATACACCAGTGAAAAGTTCGCATCCTTGAGCTTGTTGTCTTGTATAAAAGGGAAACTTCGTTATTTGAAGGGTTTGGTAGAAGCTAAACAAAAAATGCCATTTGGAAGTCCAAATCATTCCCCAGTAGAAGAGGAAGCCACCATATCAACTTCAACAGAACAGAGAAAGGAATGCATACCTACAGGTGATAAAGAAACGTGCCCAGTTTGTCAAGAACAATTAACCATTCGAAAGATGGTTTTCCCTTGTGGACATCTTACTTGCTGTAAATGTTTATTTGCAATTACTGAGAGACTACTCAATGGGAAAAAGGTTCAAGATAAGTGGGTAAAATGCCCAACATGTCGACAGCACACTGATGTTGCAAATATTGCTTTTGCTGATGATGGACATGGCGAATCTTCTGGTTCTGCTGGGCTTCCAATCCAAAGTCGTGAAGAGTGTGAAGCATCTATTATAGTTCAAGGTTCATATGGAACAAAGATTGAAGCAGTTACAAGAAGAATTCTGTGGATAAAGTCTACAGATCCAGAGGCTAAAGTTCTTGTTTTCTCAAGCTGGAATGATGTCCTTGACGTATTGGAGCATGCCTTCAGCGCTAATGGCATTACCTTTATAAGGATGAAAGGAGGAAGGAAATCACAAGTTGCCATTAGTGAATTTAAAGGAGAAAAGAGAAGCTTAACAGGAAATCACAAGTTGCATGGCCGAAACCCAGAAGGAAGATCTATTCAAGTGTTGCTGCTCTTAATTCAACACGGAGCGAATGGCCTCAATCTGTTGGAAGCGAAACATGTTATTCTTATTGAGCCGCTTCTCAATCCAGCAGCAGAAGCACAAGCCATCAGCAGAGTACACCGAATCGGACAGAAAAATAAGACCCTCGCTCATCGTTTCATAGTTAAAGGCACAGTTGAAGAGAGCATATACAAGCTCAACAAAAGCAGGAACAGCACTGCCTTCATTAGTGGTAACACAAAGAACCAAGATCAGCCCTTATTGACACTAAAAGACATCGAGGCCTTATTTTCAACAGTACCATCATTAACTGTACCAGAGACTGATGAAAGGCCAACTGAAAGTGAAAGTTTAAGACATCTGCCACCTTCTAGGGCTGCTGCCATTGCAGCTGAGAAGCGGCTCAAGGAGCAGCATTCATGTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0031974 GO:0031981 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C PHD SNF2_N zf-C3HC4

Protein Analysis

1681

Amino Acids

189.02

Weight (kDa)

6.41

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	308 - 812	1.2e-62	SNF2-related domain
SHPRH_helical-1st	PF21325	828 - 910	1.7e-24	E3 ubiquitin-protein ligase SHPRH, first helical domain
SHPRH_helical-2nd	PF21324	1015 - 1139	1.7e-07	E3 ubiquitin-protein ligase SHPRH, second helical domain
Helicase_C	PF00271	1455 - 1581	5.4e-07	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40770 AT2G40770 AT2G40770
fragaria_vesca	FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110 FvH4_7g26110
malus_domestica	MD01G1169300.v1.1
prunus_persica	Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1 Prupe.2G265500_v2.0.a1
pyrus_communis	pycom01g18200
rosa_chinensis	RchiOBHm_Chr1g0372551
rosa_laevigata	RLG00000026892
rosa_multiflora	Rmu_sc0005410.1_g000019 Rmu_sc0011709.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284860
rosa_rugosa	Rorug01G0372700
rosa_samantha	Rh1AG381200 Rh1BG344600 Rh1CG358000 Rh1DG375800
rosa_wichuraiana	Rw1G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1586, 3629, 4493
Acc16I	TGCGCA	1 cut(s)	3710
AccB1I	GGYRCC	1 cut(s)	1574
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccI	GTMKAC	4 cut(s)	814, 1469, 4222, 4397
AccII	CGCG	1 cut(s)	1642
AciI	CCGC	6 cut(s)	104, 1772, 2375, 2665, 4688, 5014
AclWI	GGATC	8 cut(s)	223, 866, 1254, 2075, 2666, 2679, 3726, 4397
AcoI	YGGCCR	2 cut(s)	3721, 4582
AcuI	CTGAAG	5 cut(s)	261, 2664, 3471, 3846, 4453
AcyI	GRCGYC	1 cut(s)	1688
AfaI	GTAC	9 cut(s)	525, 951, 1341, 2887, 2942, 3043, 4731, 4914, 4929
AfeI	AGCGCT	2 cut(s)	3190, 4474
AfiI	CCNNNNNNNGG	5 cut(s)	506, 1073, 2438, 3643, 4494
AflII	CTTAAG	2 cut(s)	325, 620
AflIII	ACRYGT	6 cut(s)	428, 1640, 2788, 2868, 4217, 4669
AgeI	ACCGGT	2 cut(s)	66, 3212
AjnI	CCWGG	2 cut(s)	2761, 3003
AjuI	GAANNNNNNNTTGG	2 cut(s)	3511, 3543
Alw21I	GWGCWC	3 cut(s)	228, 1535, 2652
Alw26I	GTCTC	5 cut(s)	2210, 2475, 3104, 4162, 4928
AlwI	GGATC	8 cut(s)	223, 866, 1254, 2075, 2666, 2679, 3726, 4397
AlwNI	CAGNNNCTG	2 cut(s)	3760, 4937
Ama87I	CYCGRG	1 cut(s)	2280
Aor51HI	AGCGCT	2 cut(s)	3190, 4474
ApaI	GGGCCC	1 cut(s)	2777
ArsI	GACNNNNNNTTYG	2 cut(s)	1199, 1231
AseI	ATTAAT	1 cut(s)	3780
AsiGI	ACCGGT	2 cut(s)	66, 3212
Asp700I	GAANNNNTTC	5 cut(s)	353, 1081, 2757, 3063, 3384
AspLEI	GCGC	7 cut(s)	930, 1635, 3127, 3191, 3711, 3804, 4475
AspS9I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3220, 3350, 3646
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	5 cut(s)	56, 1817, 2420, 3528, 4073
AsuII	TTCGAA	1 cut(s)	4105
AvaI	CYCGRG	1 cut(s)	2280
AvaII	GGWCC	4 cut(s)	497, 1774, 3220, 3350
AxyI	CCTNAGG	1 cut(s)	2193
BaeGI	GKGCMC	2 cut(s)	2777, 4079
BaeI	ACNNNNGTAYC	2 cut(s)	2886, 2919
BalI	TGGCCA	1 cut(s)	3723
BamHI	GGATCC	1 cut(s)	2671
BanI	GGYRCC	1 cut(s)	1574
BanII	GRGCYC	2 cut(s)	2571, 2777
BarI	GAAGNNNNNNTAC	2 cut(s)	3840, 3872
BbsI	GAAGAC	1 cut(s)	1212
Bbv12I	GWGCWC	3 cut(s)	228, 1535, 2652
BbvCI	CCTCAGC	1 cut(s)	2655
BciT130I	CCWGG	2 cut(s)	2763, 3005
BclI	TGATCA	2 cut(s)	3105, 3271
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	5 cut(s)	2210, 2475, 3104, 4162, 4928
BfaI	CTAG	9 cut(s)	663, 735, 1395, 1473, 3096, 3227, 3237, 3653, 4986
BfmI	CTRYAG	2 cut(s)	4056, 4398
BfoI	RGCGCY	4 cut(s)	931, 3128, 3192, 4476
BfrI	CTTAAG	2 cut(s)	325, 620
BglI	GCCNNNNNGGC	1 cut(s)	989
BglII	AGATCT	1 cut(s)	4601
BlpI	GCTNAGC	1 cut(s)	2338
BmcAI	AGTACT	1 cut(s)	2942
Bme1390I	CCNGG	3 cut(s)	932, 2763, 3005
Bme18I	GGWCC	4 cut(s)	497, 1774, 3220, 3350
BmeT110I	CYCGRG	1 cut(s)	2280
BmgT120I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3220, 3350, 3646
BmiI	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3352
BmrFI	CCNGG	3 cut(s)	932, 2763, 3005
BmrI	ACTGGG	3 cut(s)	1606, 3992, 4073
BmuI	ACTGGG	3 cut(s)	1606, 3992, 4073
BoxI	GACNNNNGTC	1 cut(s)	1664
BpiI	GAAGAC	1 cut(s)	1212
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BpmI	CTGGAG	3 cut(s)	2211, 3450, 3719
Bpu10I	CCTNAGC	2 cut(s)	2446, 2655
Bpu1102I	GCTNAGC	1 cut(s)	2338
Bpu14I	TTCGAA	1 cut(s)	4105
BpuEI	CTTGAG	8 cut(s)	2418, 2589, 3437, 3732, 3826, 3922, 4414, 5003
BpuMI	CCSGG	1 cut(s)	932
BsaHI	GRCGYC	1 cut(s)	1688
BsaJI	CCNNGG	4 cut(s)	1242, 2762, 3003, 3735
BsaWI	WCCGGW	3 cut(s)	66, 333, 3212
BsaXI	ACNNNNNCTCC	8 cut(s)	1543, 1573, 1870, 1900, 1966, 1996, 2209, 2239
Bsc4I	CCNNNNNNNGG	5 cut(s)	506, 1073, 2438, 3643, 4494
Bse118I	RCCGGY	3 cut(s)	57, 66, 3212
Bse1I	ACTGG	8 cut(s)	793, 947, 1576, 1612, 2228, 3882, 3998, 4079
Bse21I	CCTNAGG	1 cut(s)	2193
Bse3DI	GCAATG	2 cut(s)	3637, 4998
BseBI	CCWGG	2 cut(s)	2763, 3005
BseDI	CCNNGG	4 cut(s)	1242, 2762, 3003, 3735
BseGI	GGATG	7 cut(s)	42, 951, 1897, 2339, 3155, 3896, 4503
BseLI	CCNNNNNNNGG	5 cut(s)	506, 1073, 2438, 3643, 4494
BseMI	GCAATG	2 cut(s)	3637, 4998
BseNI	ACTGG	8 cut(s)	793, 947, 1576, 1612, 2228, 3882, 3998, 4079
BseRI	GAGGAG	2 cut(s)	2107, 3311
BseSI	GKGCMC	2 cut(s)	2777, 4079
BseYI	CCCAGC	3 cut(s)	836, 2573, 4289
BsgI	GTGCAG	2 cut(s)	1073, 3468
Bsh1236I	CGCG	1 cut(s)	1642
BshNI	GGYRCC	1 cut(s)	1574
BshTI	ACCGGT	2 cut(s)	66, 3212
BsiHKAI	GWGCWC	3 cut(s)	228, 1535, 2652
BsiHKCI	CYCGRG	1 cut(s)	2280
BsiSI	CCGG	5 cut(s)	58, 67, 334, 931, 3213
BslFI	GGGAC	3 cut(s)	1993, 2779, 3336
BslI	CCNNNNNNNGG	5 cut(s)	506, 1073, 2438, 3643, 4494
BsmAI	GTCTC	5 cut(s)	2210, 2475, 3104, 4162, 4928
BsmFI	GGGAC	3 cut(s)	1993, 2779, 3336
BsmI	GAATGC	3 cut(s)	2951, 4052, 5029
BsoBI	CYCGRG	1 cut(s)	2280
Bsp119I	TTCGAA	1 cut(s)	4105
Bsp120I	GGGCCC	1 cut(s)	2773
Bsp1286I	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
Bsp1720I	GCTNAGC	1 cut(s)	2338
BspACI	CCGC	6 cut(s)	104, 1772, 2375, 2665, 4688, 5014
BspFNI	CGCG	1 cut(s)	1642
BspHI	TCATGA	2 cut(s)	2970, 5042
BspLI	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3352
BspPI	GGATC	8 cut(s)	223, 866, 1254, 2075, 2666, 2679, 3726, 4397
BspQI	GCTCTTC	3 cut(s)	2229, 2640, 3069
BspT104I	TTCGAA	1 cut(s)	4105
BspT107I	GGYRCC	1 cut(s)	1574
BspTI	CTTAAG	2 cut(s)	325, 620
BsrDI	GCAATG	2 cut(s)	3637, 4998
BsrFI	RCCGGY	3 cut(s)	57, 66, 3212
BsrI	ACTGG	8 cut(s)	793, 947, 1576, 1612, 2228, 3882, 3998, 4079
BssAI	RCCGGY	3 cut(s)	57, 66, 3212
BssECI	CCNNGG	4 cut(s)	1242, 2762, 3003, 3735
BssNAI	GTATAC	1 cut(s)	1470
BssNI	GRCGYC	1 cut(s)	1688
BssT1I	CCWWGG	1 cut(s)	3735
Bst1107I	GTATAC	1 cut(s)	1470
Bst2UI	CCWGG	2 cut(s)	2763, 3005
BstACI	GRCGYC	1 cut(s)	1688
BstAFI	CTTAAG	2 cut(s)	325, 620
BstAPI	GCANNNNNTGC	2 cut(s)	635, 4247
BstBI	TTCGAA	1 cut(s)	4105
BstENI	CCTNNNNNAGG	2 cut(s)	2436, 4492
BstF5I	GGATG	7 cut(s)	42, 951, 1897, 2339, 3155, 3896, 4503
BstFNI	CGCG	1 cut(s)	1642
BstH2I	RGCGCY	4 cut(s)	931, 3128, 3192, 4476
BstHHI	GCGC	7 cut(s)	930, 1635, 3127, 3191, 3711, 3804, 4475
BstMAI	GTCTC	5 cut(s)	2210, 2475, 3104, 4162, 4928
BstNI	CCWGG	2 cut(s)	2763, 3005
BstPAI	GACNNNNGTC	1 cut(s)	1664
BstSCI	CCNGG	3 cut(s)	930, 2761, 3003
BstSFI	CTRYAG	2 cut(s)	4056, 4398
BstSLI	GKGCMC	2 cut(s)	2777, 4079
BstUI	CGCG	1 cut(s)	1642
BstV2I	GAAGAC	1 cut(s)	1212
BstX2I	RGATCY	7 cut(s)	871, 1246, 2080, 2671, 3731, 4402, 4601
BstXI	CCANNNNNNTGG	2 cut(s)	1381, 2482
BstYI	RGATCY	7 cut(s)	871, 1246, 2080, 2671, 3731, 4402, 4601
BstZ17I	GTATAC	1 cut(s)	1470
Bsu36I	CCTNAGG	1 cut(s)	2193
BtgZI	GCGATG	1 cut(s)	981
BtsCI	GGATG	7 cut(s)	42, 951, 1897, 2339, 3155, 3896, 4503
BtsI	GCAGTG	3 cut(s)	289, 1085, 4830
CaiI	CAGNNNCTG	2 cut(s)	3760, 4937
CciI	TCATGA	2 cut(s)	2970, 5042
CfoI	GCGC	7 cut(s)	930, 1635, 3127, 3191, 3711, 3804, 4475
Cfr10I	RCCGGY	3 cut(s)	57, 66, 3212
Cfr13I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3220, 3350, 3646
CseI	GACGC	4 cut(s)	1232, 1654, 1677, 1821
Csp6I	GTAC	9 cut(s)	524, 950, 1340, 2886, 2941, 3042, 4730, 4913, 4928
CspAI	ACCGGT	2 cut(s)	66, 3212
CspCI	CAANNNNNGTGG	2 cut(s)	4181, 4216
CviQI	GTAC	9 cut(s)	524, 950, 1340, 2886, 2941, 3042, 4730, 4913, 4928
DraI	TTTAAA	3 cut(s)	138, 2134, 4540
EaeI	YGGCCR	2 cut(s)	3721, 4582
Eco130I	CCWWGG	1 cut(s)	3735
Eco147I	AGGCCT	2 cut(s)	2451, 4898
Eco24I	GRGCYC	2 cut(s)	2571, 2777
Eco32I	GATATC	2 cut(s)	1717, 3304
Eco47I	GGWCC	4 cut(s)	497, 1774, 3220, 3350
Eco47III	AGCGCT	2 cut(s)	3190, 4474
Eco57I	CTGAAG	5 cut(s)	261, 2664, 3471, 3846, 4453
Eco81I	CCTNAGG	1 cut(s)	2193
Eco88I	CYCGRG	1 cut(s)	2280
EcoNI	CCTNNNNNAGG	2 cut(s)	2436, 4492
EcoO109I	RGGNCCY	1 cut(s)	2774
EcoRI	GAATTC	2 cut(s)	416, 4380
EcoRII	CCWGG	2 cut(s)	2761, 3003
EcoRV	GATATC	2 cut(s)	1717, 3304
EcoT14I	CCWWGG	1 cut(s)	3735
EcoT22I	ATGCAT	4 cut(s)	1363, 2881, 3841, 4052
EcoT38I	GRGCYC	2 cut(s)	2571, 2777
ErhI	CCWWGG	1 cut(s)	3735
FalI	AAGNNNNNCTT	6 cut(s)	3051, 3083, 3915, 3947, 4541, 4573
FaqI	GGGAC	3 cut(s)	1993, 2779, 3336
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	5 cut(s)	1352, 1756, 2086, 3204, 4348
FbaI	TGATCA	2 cut(s)	3105, 3271
FblI	GTMKAC	4 cut(s)	814, 1469, 4222, 4397
FokI	GGATG	7 cut(s)	49, 958, 1904, 2346, 3142, 3883, 4510
FriOI	GRGCYC	2 cut(s)	2571, 2777
FspBI	CTAG	9 cut(s)	663, 735, 1395, 1473, 3096, 3227, 3237, 3653, 4986
FspI	TGCGCA	1 cut(s)	3710
GlaI	GCGC	7 cut(s)	929, 1634, 3126, 3190, 3710, 3803, 4474
GsaI	CCCAGC	3 cut(s)	840, 2577, 4293
GsuI	CTGGAG	3 cut(s)	2211, 3450, 3719
HaeII	RGCGCY	4 cut(s)	931, 3128, 3192, 4476
HapII	CCGG	5 cut(s)	58, 67, 334, 931, 3213
HgaI	GACGC	4 cut(s)	1232, 1654, 1677, 1821
HhaI	GCGC	7 cut(s)	930, 1635, 3127, 3191, 3711, 3804, 4475
Hin1I	GRCGYC	1 cut(s)	1688
Hin6I	GCGC	7 cut(s)	928, 1633, 3125, 3189, 3709, 3802, 4473
HinP1I	GCGC	7 cut(s)	928, 1633, 3125, 3189, 3709, 3802, 4473
HincII	GTYRAC	5 cut(s)	594, 815, 1749, 2634, 4223
HindII	GTYRAC	5 cut(s)	594, 815, 1749, 2634, 4223
HindIII	AAGCTT	3 cut(s)	371, 2408, 4555
HpaII	CCGG	5 cut(s)	58, 67, 334, 931, 3213
HphI	GGTGA	5 cut(s)	56, 1817, 2420, 3528, 4073
Hpy99I	CGWCG	1 cut(s)	1815
HpyCH4IV	ACGT	4 cut(s)	590, 2868, 4073, 4452
HpySE526I	ACGT	4 cut(s)	590, 2868, 4073, 4452
Hsp92I	GRCGYC	1 cut(s)	1688
HspAI	GCGC	7 cut(s)	928, 1633, 3125, 3189, 3709, 3802, 4473
Ksp22I	TGATCA	2 cut(s)	3105, 3271
LguI	GCTCTTC	3 cut(s)	2229, 2640, 3069
LmnI	GCTCC	7 cut(s)	1279, 1301, 2105, 2741, 4459, 4637, 5023
MaeI	CTAG	9 cut(s)	663, 735, 1395, 1473, 3096, 3227, 3237, 3653, 4986
MaeII	ACGT	4 cut(s)	590, 2868, 4073, 4452
MfeI	CAATTG	2 cut(s)	570, 1375
MflI	RGATCY	7 cut(s)	871, 1246, 2080, 2671, 3731, 4402, 4601
MhlI	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
MlsI	TGGCCA	1 cut(s)	3723
MluI	ACGCGT	1 cut(s)	1640
MluNI	TGGCCA	1 cut(s)	3723
MlyI	GAGTC	6 cut(s)	100, 653, 753, 1781, 1975, 2968
MmeI	TCCRAC	7 cut(s)	1440, 1874, 2308, 2488, 3036, 3553, 4638
Mox20I	TGGCCA	1 cut(s)	3723
Mph1103I	ATGCAT	4 cut(s)	1363, 2881, 3841, 4052
MroXI	GAANNNNTTC	5 cut(s)	353, 1081, 2757, 3063, 3384
MscI	TGGCCA	1 cut(s)	3723
MslI	CAYNNNNRTG	3 cut(s)	1803, 2480, 4233
Msp20I	TGGCCA	1 cut(s)	3723
MspA1I	CMGCKG	3 cut(s)	1528, 2424, 5006
MspCI	CTTAAG	2 cut(s)	325, 620
MspI	CCGG	5 cut(s)	58, 67, 334, 931, 3213
MspR9I	CCNGG	3 cut(s)	932, 2763, 3005
MunI	CAATTG	2 cut(s)	570, 1375
Mva1269I	GAATGC	3 cut(s)	2951, 4052, 5029
MvaI	CCWGG	2 cut(s)	2763, 3005
MvnI	CGCG	1 cut(s)	1642
NciI	CCSGG	1 cut(s)	932
NdeI	CATATG	5 cut(s)	1352, 1756, 2086, 3204, 4348
NlaIV	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3352
NmuCI	GTSAC	7 cut(s)	645, 721, 1346, 2426, 2780, 3086, 3510
NsbI	TGCGCA	1 cut(s)	3710
NsiI	ATGCAT	4 cut(s)	1363, 2881, 3841, 4052
NspV	TTCGAA	1 cut(s)	4105
PaeI	GCATGC	3 cut(s)	2040, 3709, 4466
PagI	TCATGA	2 cut(s)	2970, 5042
PceI	AGGCCT	2 cut(s)	2451, 4898
PciI	ACATGT	4 cut(s)	428, 2788, 4217, 4669
PciSI	GCTCTTC	3 cut(s)	2229, 2640, 3069
PctI	GAATGC	3 cut(s)	2951, 4052, 5029
PdmI	GAANNNNTTC	5 cut(s)	353, 1081, 2757, 3063, 3384
PfeI	GAWTC	9 cut(s)	1824, 2357, 2627, 3233, 3527, 3554, 3757, 4274, 4737
PflMI	CCANNNNNTGG	1 cut(s)	1073
PinAI	ACCGGT	2 cut(s)	66, 3212
PleI	GAGTC	6 cut(s)	99, 652, 752, 1781, 1975, 2968
PpsI	GAGTC	6 cut(s)	99, 652, 752, 1781, 1975, 2968
PscI	ACATGT	4 cut(s)	428, 2788, 4217, 4669
PshAI	GACNNNNGTC	1 cut(s)	1664
PshBI	ATTAAT	1 cut(s)	3780
PsiI	TTATAA	3 cut(s)	1586, 3629, 4493
Psp6I	CCWGG	2 cut(s)	2761, 3003
PspFI	CCCAGC	3 cut(s)	836, 2573, 4289
PspGI	CCWGG	2 cut(s)	2761, 3003
PspN4I	GGNNCC	6 cut(s)	332, 1576, 2673, 2775, 2776, 3352
PspOMI	GGGCCC	1 cut(s)	2773
PspPI	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3220, 3350, 3646
PstNI	CAGNNNCTG	2 cut(s)	3760, 4937
PsuI	RGATCY	7 cut(s)	871, 1246, 2080, 2671, 3731, 4402, 4601
PvuII	CAGCTG	3 cut(s)	1528, 2424, 5006
RsaI	GTAC	9 cut(s)	525, 951, 1341, 2887, 2942, 3043, 4731, 4914, 4929
RsaNI	GTAC	9 cut(s)	524, 950, 1340, 2886, 2941, 3042, 4730, 4913, 4928
RseI	CAYNNNNRTG	3 cut(s)	1803, 2480, 4233
SalI	GTCGAC	2 cut(s)	813, 4221
SapI	GCTCTTC	3 cut(s)	2229, 2640, 3069
Sau96I	GGNCC	8 cut(s)	497, 982, 1774, 2773, 2774, 3220, 3350, 3646
ScaI	AGTACT	1 cut(s)	2942
SchI	GAGTC	6 cut(s)	100, 653, 753, 1781, 1975, 2968
ScrFI	CCNGG	3 cut(s)	932, 2763, 3005
SduI	GDGCHC	6 cut(s)	228, 1535, 2571, 2652, 2777, 4079
SfcI	CTRYAG	2 cut(s)	4056, 4398
SfiI	GGCCNNNNNGGCC	1 cut(s)	989
SfuI	TTCGAA	1 cut(s)	4105
SinI	GGWCC	4 cut(s)	497, 1774, 3220, 3350
SmiMI	CAYNNNNRTG	3 cut(s)	1803, 2480, 4233
SphI	GCATGC	3 cut(s)	2040, 3709, 4466
SseBI	AGGCCT	2 cut(s)	2451, 4898
SsiI	CCGC	6 cut(s)	104, 1772, 2375, 2665, 4688, 5014
SspI	AATATT	4 cut(s)	1869, 2493, 3246, 4246
SspMI	CTAG	9 cut(s)	663, 735, 1395, 1473, 3096, 3227, 3237, 3653, 4986
StuI	AGGCCT	2 cut(s)	2451, 4898
StyD4I	CCNGG	3 cut(s)	930, 2761, 3003
StyI	CCWWGG	1 cut(s)	3735
TaiI	ACGT	4 cut(s)	593, 2871, 4076, 4455
TaqI	TCGA	8 cut(s)	814, 1810, 2054, 3256, 3325, 4105, 4222, 4893
TaqII	GACCGA	1 cut(s)	192
TatI	WGTACW	4 cut(s)	2885, 2940, 3041, 4729
TauI	GCSGC	2 cut(s)	4690, 5017
TfiI	GAWTC	9 cut(s)	1824, 2357, 2627, 3233, 3527, 3554, 3757, 4274, 4737
TseFI	GTSAC	7 cut(s)	645, 721, 1346, 2426, 2780, 3086, 3510
Tsp45I	GTSAC	7 cut(s)	645, 721, 1346, 2426, 2780, 3086, 3510
TspGWI	ACGGA	1 cut(s)	4650
Van91I	CCANNNNNTGG	1 cut(s)	1073
Vha464I	CTTAAG	2 cut(s)	325, 620
VpaK11BI	GGWCC	4 cut(s)	497, 1774, 3220, 3350
VspI	ATTAAT	1 cut(s)	3780
XagI	CCTNNNNNAGG	2 cut(s)	2436, 4492
XbaI	TCTAGA	1 cut(s)	3236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4108
XmiI	GTMKAC	4 cut(s)	814, 1469, 4222, 4397
XmnI	GAANNNNTTC	5 cut(s)	353, 1081, 2757, 3063, 3384
XspI	CTAG	9 cut(s)	663, 735, 1395, 1473, 3096, 3227, 3237, 3653, 4986
ZrmI	AGTACT	1 cut(s)	2942
Zsp2I	ATGCAT	4 cut(s)	1363, 2881, 3841, 4052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.