FvH4_7g26400

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003479
Physical Location & Seq
Reverse (-)
19962087 .. 19962576
490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26400.t1

Sequence Viewer

Length: 339 bp
ATGATGAGGGCAGGATTAGTTGGTTTCATGATGATGTGCTTATTGTTCTTGGTAGGTGTTTGGGATGTGGTTCCGGTAGCGGTGGCGGACACGACGCCGAGCCAGTGTAAGGAGGAGAAGAAGCTTTGGGTTGATGCCTGCAAGGCTGTTGCTACAGGGAGTAATCCCTCTCCATACTGCTGCCAACGCGTTAGGGTTACTCATGTTGAGTGTGTCTGCCCCTATGTTACTCCCAAGATTGCCAATCTCTTCAACATTCCTCGTGTTATTAAGCAAATTGAAGGTTGCGGAAGAACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

113

Amino Acids

12.3

Weight (kDa)

8.8

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 29 - 106 1.3e-09 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 80, 86, 288
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 3 cut(s) 253, 281, 313
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 319
BauI CACGAG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 109
BspACI CCGC 3 cut(s) 80, 86, 288
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 143, 186
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 139
CciI TCATGA 1 cut(s) 27
CseI GACGC 1 cut(s) 103
CviAII CATG 2 cut(s) 28, 203
CviJI RGCY 3 cut(s) 102, 124, 146
CviKI_1 RGCY 3 cut(s) 102, 124, 146
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 101
FaeI CATG 2 cut(s) 31, 206
FaiI YATR 5 cut(s) 29, 175, 204, 225, 337
FatI CATG 2 cut(s) 27, 202
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 31, 206
HindIII AAGCTT 1 cut(s) 122
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 186
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 31, 206
LpnPI CCDG 4 cut(s) 87, 116, 141, 151
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 196, 226
MboII GAAGA 3 cut(s) 130, 241, 303
MluCI AATT 1 cut(s) 276
MluI ACGCGT 1 cut(s) 187
MnlI CCTC 4 cut(s) 106, 178, 270, 312
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 143, 186
NlaIII CATG 2 cut(s) 31, 206
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 27
PkrI GCNGC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 181
SetI ASST 3 cut(s) 58, 126, 286
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 1 cut(s) 276
SsiI CCGC 3 cut(s) 80, 86, 288
TaaI ACNGT 1 cut(s) 298
TasI AATT 1 cut(s) 276
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 110
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.