Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003479

Physical Location & Seq

Genomic Coordinates Reverse (-)

31130919 .. 31131492

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1239800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGGGCAGCAGGCTCATTCTCAGTGGCCGTGATCATATGCTTGTTATGGTGTGGTGTTTGGGAGGTGGCTCCGATGGCGAAGGCGAACACGTCGCCGAGCCAGTGTAAGCAGGAAGTGGGCCGTCTCCGTGATGAATGCAGGAGCGCTATACTTCCAGGACGTAATCCTTCTGCGCTCTGCTGCCAAATTGTTAGGGCTGCTCATGTTGAGTGTGTGTGCCCTTATGTCACCCCCAAGGTGGCCAATTTGATCCCCGTCGGACGTACAATTAAGCAGATTGAAGGTTGTGGAAGAAGTGTCCCTCGCAACTTCAAGTGTGGGAGCATCACCACCCCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

115

Amino Acids

12.24

Weight (kDa)

9.21

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26400 FvH4_7g26430
malus_domestica	MD07G1239500.v1.1 MD07G1239700.v1.1 MD07G1239800.v1.1
prunus_persica	Prupe.5G054600_v2.0.a1 Prupe.7G057100_v2.0.a1
pyrus_communis	pycom07g21530 pycom07g21620
rosa_chinensis	RchiOBHm_Chr1g0328141 RchiOBHm_Chr1g0328171 RchiOBHm_Chr1g0372951 RchiOBHm_Chr1g0372991
rosa_laevigata	RLG00000026859 RLG00000026862
rosa_multiflora	Rmu_sc0002809.1_g000022 Rmu_sc0004646.1_g000018 Rmu_ssc0000425.1_g000013
rosa_roxburghii	Rroxscaffold_4G00284570
rosa_rugosa	Rorug01G0375200 Rorug01G0375400
rosa_samantha	Rh1AG090900 Rh1AG091000 Rh1AG383700 Rh1BG347600 Rh1CG087400 Rh1CG087600 Rh1CG360900 Rh1CG361000 Rh1DG094300 Rh1DG094500 Rh1DG378500
rosa_wichuraiana	Rw1G007050 Rw1G007060 Rw1G033810 Rw1G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	27, 243
AfaI	GTAC	1 cut(s)	268
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	284, 316
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	247
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	3 cut(s)	27, 121, 243
ApeKI	GCWGC	3 cut(s)	8, 183, 200
AspLEI	GCGC	2 cut(s)	149, 178
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	223, 322
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	20, 170, 187
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	14, 108
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	3 cut(s)	9, 184, 201
BlsI	GCNGC	3 cut(s)	10, 185, 202
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	20, 170, 187
BshFI	GGCC	3 cut(s)	29, 123, 245
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	29, 123, 245
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	33, 252
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	3 cut(s)	29, 123, 245
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	33, 252
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 178
BstKTI	GATC	2 cut(s)	36, 255
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	33, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	20, 170, 187
BsuRI	GGCC	3 cut(s)	29, 123, 245
BtrI	CACGTC	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	30, 110
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	149, 178
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	2 cut(s)	206, 342
CviJI	RGCY	7 cut(s)	15, 29, 71, 102, 123, 200, 245
CviKI_1	RGCY	7 cut(s)	15, 29, 71, 102, 123, 200, 245
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	2 cut(s)	35, 254
DpnII	GATC	2 cut(s)	33, 252
EaeI	YGGCCR	2 cut(s)	27, 243
Eco130I	CCWWGG	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	209, 345
FaiI	YATR	7 cut(s)	38, 40, 49, 152, 207, 228, 343
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	205, 341
FauNDI	CATATG	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	9, 184, 201
Fsp4HI	GCNGC	3 cut(s)	9, 184, 201
GlaI	GCGC	2 cut(s)	148, 177
GluI	GCNGC	3 cut(s)	9, 184, 201
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	29, 123, 245
HhaI	GCGC	2 cut(s)	149, 178
Hin1II	CATG	2 cut(s)	209, 345
Hin6I	GCGC	2 cut(s)	147, 176
HinP1I	GCGC	2 cut(s)	147, 176
HphI	GGTGA	2 cut(s)	223, 322
Hpy188I	TCNGA	2 cut(s)	75, 263
Hpy99I	CGWCG	2 cut(s)	97, 263
HpyAV	CCTTC	3 cut(s)	76, 180, 278
HpyCH4IV	ACGT	3 cut(s)	92, 163, 265
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	3 cut(s)	92, 163, 265
Hsp92II	CATG	2 cut(s)	209, 345
HspAI	GCGC	2 cut(s)	147, 176
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	33, 252
LmnI	GCTCC	3 cut(s)	76, 144, 324
LpnPI	CCDG	5 cut(s)	98, 116, 127, 144, 171
Lsp1109I	GCAGC	3 cut(s)	20, 170, 187
LweI	GCATC	1 cut(s)	336
MaeII	ACGT	3 cut(s)	92, 163, 265
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	35, 254
MboI	GATC	2 cut(s)	33, 252
MboII	GAAGA	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	3 cut(s)	189, 247, 270
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	58, 315
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	33, 252
NlaIII	CATG	2 cut(s)	209, 345
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	229
PctI	GAATGC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	10, 185, 202
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	9, 184, 201
Sau3AI	GATC	2 cut(s)	33, 252
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	69, 95, 166, 243, 268, 289
SfaNI	GCATC	1 cut(s)	336
Sse9I	AATT	3 cut(s)	189, 247, 270
SsiI	CCGC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	3 cut(s)	95, 166, 268
TasI	AATT	3 cut(s)	189, 247, 270
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	30, 110
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	8, 183, 200
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	30, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.