Rorug01G0375400

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003479
Physical Location & Seq
Reverse (-)
48942762 .. 48947215
4454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0375400.1

Sequence Viewer

Length: 954 bp
ATGGCGAATCGATGGTGGGCTGGAAATGTGGCGATGGGAGCTCATGACTCAATCACCGCCTCGACACCACCGTCTCTTCATCTTAGAAACTCTGAAGCCGAAGAGCACAACAACAACAACAACACACCCACCAACAGCAGCACCAGCAACCCAAACAACACTCCACCTCAGAAGCAGGACGACGACCAGGACAGCCGTGACAACGATCGAGAAGTTGACAATCAAGACCCTAGCTCCGGCGGCCCCGACAGCCTCGAGCCTGGCTCCAGCAACCGCCGGCCCAGAGGCCGTCCCCCCGGCTCGAAAAACAAGCCGAAACCGCCGATAATCATCACCAAAGAGTCTCCCAACGCTCTCCGGAGCCATGTCTTGGAAATCAGCAGCGGCAGCGACATCGTCGAGAGCATTGCCACCTTCGCACAGCGCAGGCACAGAGGAGTCTCCGTCTTAAGCGGCAGCGGCATTGTTTCTAACGTCACTCTTCGTCAGCCGGCAGCGCCGAGCGGGGTCATAACGCTCCACGGAAGGTTCGAGATTCTGTCCCTAAACGGTGCGTTTCTGCCTGCCCCGTCGCCGCCGGGGGCTAGTGGCCTGACCGTGTACTTGGGCGGCGGGCAGGGGCAGGTGGTTGGTGGGACTGTTGTTGGAGCTCTGTTGGCTTCCGGGCCGGTGATGATCATTGCGGCGACGTTCACTAATGCCACTTATGAGAGACTGCCGCTTGAGGATGAGAGCAATGAAGGGATGCAATTGCAACAGCAACAGCAGCAGCAATCCGGTGTGAATTCGGCAGGGAACGGAGGGAATTCGGGTTCTCAGGGCTTGAGTGATCAGCAGCAACAACAGCAACAAGTGCCCATTTACGCTTTGCCTCCGACTTTGCTTCCAAATGGTCAGATGCCGCCTGATGTGTACTGGGGTCCTCCACCGCCTAGACCTCCGCCTGCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

317

Amino Acids

33.4

Weight (kDa)

5.51

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 120 - 233 1.2e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 357
AcsI RAATTY 2 cut(s) 784, 805
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 602, 914
AfiI CCNNNNNNNGG 2 cut(s) 236, 370
AflII CTTAAG 1 cut(s) 448
AjnI CCWGG 2 cut(s) 186, 259
AloI GAACNNNNNNTCC 2 cut(s) 796, 828
AluBI AGCT 3 cut(s) 41, 234, 650
AluI AGCT 3 cut(s) 41, 234, 650
Alw21I GWGCWC 3 cut(s) 43, 108, 652
Alw26I GTCTC 4 cut(s) 78, 348, 445, 706
Ama87I CYCGRG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 5 cut(s) 241, 278, 286, 589, 665
ApeKI GCWGC 8 cut(s) 138, 381, 387, 456, 494, 766, 769, 835
ApoI RAATTY 2 cut(s) 784, 805
AspLEI GCGC 2 cut(s) 426, 499
AspS9I GGNCC 4 cut(s) 242, 279, 665, 920
AsuC2I CCSGG 3 cut(s) 297, 579, 664
AsuHPI GGTGA 3 cut(s) 46, 325, 682
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 858
BanII GRGCYC 2 cut(s) 43, 652
Bbv12I GWGCWC 3 cut(s) 43, 108, 652
BbvI GCAGC 8 cut(s) 150, 393, 399, 468, 506, 778, 781, 847
BccI CCATC 2 cut(s) 6, 28
BceAI ACGGC 2 cut(s) 180, 273
BcgI CGANNNNNNTGC 4 cut(s) 376, 389, 410, 423
BciT130I CCWGG 2 cut(s) 188, 261
BclI TGATCA 2 cut(s) 675, 829
BcnI CCSGG 3 cut(s) 297, 579, 664
BcoDI GTCTC 4 cut(s) 78, 348, 445, 706
BfaI CTAG 3 cut(s) 231, 585, 933
BfoI RGCGCY 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 448
BfuAI ACCTGC 1 cut(s) 613
Bme1390I CCNGG 5 cut(s) 188, 261, 297, 579, 664
Bme18I GGWCC 1 cut(s) 920
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 4 cut(s) 242, 279, 665, 920
BmiI GGNNCC 4 cut(s) 244, 265, 362, 921
BmrFI CCNGG 5 cut(s) 188, 261, 297, 579, 664
BmrI ACTGGG 1 cut(s) 925
BmsI GCATC 2 cut(s) 735, 888
BmuI ACTGGG 1 cut(s) 925
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 250
BpuEI CTTGAG 2 cut(s) 743, 844
BpuMI CCSGG 3 cut(s) 297, 579, 664
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 295, 520, 578
BsaWI WCCGGW 2 cut(s) 357, 776
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 429, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 370
Bse118I RCCGGY 3 cut(s) 276, 490, 667
Bse1I ACTGG 1 cut(s) 920
Bse3DI GCAATG 3 cut(s) 405, 678, 742
Bse8I GATNNNNATC 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 2 cut(s) 188, 261
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 3 cut(s) 295, 520, 578
BseGI GGATG 2 cut(s) 733, 750
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 236, 370
BseMI GCAATG 3 cut(s) 405, 678, 742
BseMII CTCAG 2 cut(s) 182, 830
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 8 cut(s) 150, 393, 399, 468, 506, 778, 781, 847
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 5 cut(s) 243, 280, 288, 591, 667
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 3 cut(s) 43, 108, 652
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 9 cut(s) 237, 277, 297, 358, 491, 578, 663, 668, 777
BslFI GGGAC 3 cut(s) 276, 526, 649
BslI CCNNNNNNNGG 2 cut(s) 236, 370
BsmAI GTCTC 4 cut(s) 78, 348, 445, 706
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 3 cut(s) 276, 526, 649
BsnI GGCC 5 cut(s) 243, 280, 288, 591, 667
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 4 cut(s) 43, 108, 652, 858
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 3 cut(s) 205, 675, 829
BspANI GGCC 5 cut(s) 243, 280, 288, 591, 667
BspCNI CTCAG 2 cut(s) 181, 829
BspDI ATCGAT 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 357
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 4 cut(s) 244, 265, 362, 921
BspMI ACCTGC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 448
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 3 cut(s) 405, 678, 742
BsrFI RCCGGY 3 cut(s) 276, 490, 667
BsrI ACTGG 1 cut(s) 920
BssAI RCCGGY 3 cut(s) 276, 490, 667
BssECI CCNNGG 3 cut(s) 295, 520, 578
BssMI GATC 3 cut(s) 205, 675, 829
Bst2UI CCWGG 2 cut(s) 188, 261
Bst4CI ACNGT 4 cut(s) 72, 551, 598, 640
Bst6I CTCTTC 3 cut(s) 81, 96, 486
BstAFI CTTAAG 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 853
BstC8I GCNNGC 6 cut(s) 278, 428, 492, 564, 614, 945
BstDEI CTNAG 3 cut(s) 83, 168, 816
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 733, 750
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 2 cut(s) 426, 499
BstKTI GATC 3 cut(s) 208, 678, 832
BstMAI GTCTC 4 cut(s) 78, 348, 445, 706
BstMBI GATC 3 cut(s) 205, 675, 829
BstMCI CGRYCG 1 cut(s) 208
BstNI CCWGG 2 cut(s) 188, 261
BstSCI CCNGG 5 cut(s) 186, 259, 295, 577, 662
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 8 cut(s) 150, 393, 399, 468, 506, 778, 781, 847
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 5 cut(s) 243, 280, 288, 591, 667
BsuTUI ATCGAT 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 733, 750
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 6 cut(s) 278, 428, 492, 564, 614, 945
CciI TCATGA 1 cut(s) 43
CfoI GCGC 2 cut(s) 426, 499
Cfr10I RCCGGY 3 cut(s) 276, 490, 667
Cfr13I GGNCC 4 cut(s) 242, 279, 665, 920
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 601, 913
CviAII CATG 2 cut(s) 44, 365
CviQI GTAC 2 cut(s) 601, 913
DdeI CTNAG 3 cut(s) 83, 168, 816
DpnI GATC 3 cut(s) 207, 677, 831
DpnII GATC 3 cut(s) 205, 675, 829
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 3 cut(s) 81, 96, 486
EarI CTCTTC 3 cut(s) 81, 96, 486
EciI GGCGGA 1 cut(s) 930
Ecl136II GAGCTC 2 cut(s) 41, 650
Eco24I GRGCYC 2 cut(s) 43, 652
Eco47I GGWCC 1 cut(s) 920
Eco53kI GAGCTC 2 cut(s) 41, 650
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 2 cut(s) 41, 650
EcoO109I RGGNCCY 1 cut(s) 920
EcoRI GAATTC 2 cut(s) 784, 805
EcoRII CCWGG 2 cut(s) 186, 259
EcoT38I GRGCYC 2 cut(s) 43, 652
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 47, 368
FaiI YATR 4 cut(s) 45, 366, 512, 708
FaqI GGGAC 3 cut(s) 276, 526, 649
FatI CATG 2 cut(s) 43, 364
FauI CCCGC 2 cut(s) 497, 605
FbaI TGATCA 2 cut(s) 675, 829
FokI GGATG 2 cut(s) 740, 757
FriOI GRGCYC 2 cut(s) 43, 652
FspBI CTAG 3 cut(s) 231, 585, 933
GlaI GCGC 2 cut(s) 425, 498
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 5 cut(s) 243, 280, 288, 591, 667
HapII CCGG 9 cut(s) 237, 277, 297, 358, 491, 578, 663, 668, 777
HhaI GCGC 2 cut(s) 426, 499
Hin1II CATG 2 cut(s) 47, 368
Hin6I GCGC 2 cut(s) 424, 497
HinP1I GCGC 2 cut(s) 424, 497
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 5 cut(s) 7, 47, 341, 438, 535
HpaII CCGG 9 cut(s) 237, 277, 297, 358, 491, 578, 663, 668, 777
HphI GGTGA 3 cut(s) 46, 325, 682
Hpy166II GTNNAC 4 cut(s) 217, 601, 693, 913
Hpy188I TCNGA 4 cut(s) 94, 171, 876, 897
Hpy188III TCNNGA 6 cut(s) 44, 209, 224, 358, 400, 532
Hpy8I GTNNAC 4 cut(s) 217, 601, 693, 913
Hpy99I CGWCG 4 cut(s) 185, 401, 574, 691
HpyAV CCTTC 3 cut(s) 424, 519, 734
HpyCH4III ACNGT 4 cut(s) 72, 551, 598, 640
HpyCH4IV ACGT 2 cut(s) 474, 689
HpyCH4V TGCA 2 cut(s) 748, 754
HpyF3I CTNAG 3 cut(s) 83, 168, 816
HpySE526I ACGT 2 cut(s) 474, 689
Hsp92II CATG 2 cut(s) 47, 368
HspAI GCGC 2 cut(s) 424, 497
Kpn2I TCCGGA 1 cut(s) 357
KroI GCCGGC 2 cut(s) 276, 490
KroNI GCCGGC 2 cut(s) 278, 492
Ksp22I TGATCA 2 cut(s) 675, 829
Kzo9I GATC 3 cut(s) 205, 675, 829
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 6 cut(s) 38, 239, 269, 360, 522, 647
Lsp1109I GCAGC 8 cut(s) 150, 393, 399, 468, 506, 778, 781, 847
LweI GCATC 2 cut(s) 735, 888
MaeI CTAG 3 cut(s) 231, 585, 933
MaeII ACGT 2 cut(s) 474, 689
MaeIII GTNAC 2 cut(s) 197, 475
MalI GATC 3 cut(s) 207, 677, 831
MbiI CCGCTC 1 cut(s) 504
MboI GATC 3 cut(s) 205, 675, 829
MboII GAAGA 3 cut(s) 68, 113, 473
MfeI CAATTG 1 cut(s) 749
MhlI GDGCHC 4 cut(s) 43, 108, 652, 858
MluCI AATT 3 cut(s) 749, 784, 805
MlyI GAGTC 3 cut(s) 41, 350, 447
MmeI TCCRAC 2 cut(s) 625, 899
MroI TCCGGA 1 cut(s) 357
MroNI GCCGGC 2 cut(s) 276, 490
MseI TTAA 1 cut(s) 449
MspA1I CMGCKG 2 cut(s) 384, 459
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 9 cut(s) 237, 277, 297, 358, 491, 578, 663, 668, 777
MspR9I CCNGG 5 cut(s) 188, 261, 297, 579, 664
MunI CAATTG 1 cut(s) 749
MvaI CCWGG 2 cut(s) 188, 261
NaeI GCCGGC 2 cut(s) 278, 492
NciI CCSGG 3 cut(s) 297, 579, 664
NdeII GATC 3 cut(s) 205, 675, 829
NgoMIV GCCGGC 2 cut(s) 276, 490
NlaIII CATG 2 cut(s) 47, 368
NlaIV GGNNCC 4 cut(s) 244, 265, 362, 921
NmeAIII GCCGAG 1 cut(s) 525
NmuCI GTSAC 2 cut(s) 197, 475
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 528
PdiI GCCGGC 2 cut(s) 278, 492
PfeI GAWTC 2 cut(s) 7, 535
PflFI GACNNNGTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 370
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 3 cut(s) 41, 349, 446
PpsI GAGTC 3 cut(s) 41, 349, 446
PpuMI RGGWCCY 1 cut(s) 920
Psp124BI GAGCTC 2 cut(s) 43, 652
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 2 cut(s) 186, 259
PspGI CCWGG 2 cut(s) 186, 259
PspN4I GGNNCC 4 cut(s) 244, 265, 362, 921
PspPI GGNCC 4 cut(s) 242, 279, 665, 920
PspPPI RGGWCCY 1 cut(s) 920
PspXI VCTCGAGB 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 395
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 2 cut(s) 602, 914
RsaNI GTAC 2 cut(s) 601, 913
SacI GAGCTC 2 cut(s) 43, 652
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 449
Sau3AI GATC 3 cut(s) 205, 675, 829
Sau96I GGNCC 4 cut(s) 242, 279, 665, 920
SchI GAGTC 3 cut(s) 41, 350, 447
ScrFI CCNGG 5 cut(s) 188, 261, 297, 579, 664
SduI GDGCHC 4 cut(s) 43, 108, 652, 858
SfaNI GCATC 2 cut(s) 735, 888
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 920
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 4 cut(s) 254, 448, 722, 823
SmoI CTYRAG 4 cut(s) 254, 448, 722, 823
Sse9I AATT 3 cut(s) 749, 784, 805
SspMI CTAG 3 cut(s) 231, 585, 933
SstI GAGCTC 2 cut(s) 43, 652
StyD4I CCNGG 5 cut(s) 186, 259, 295, 577, 662
TaaI ACNGT 4 cut(s) 72, 551, 598, 640
TaiI ACGT 2 cut(s) 477, 692
TaqI TCGA 7 cut(s) 10, 62, 208, 255, 302, 399, 531
TasI AATT 3 cut(s) 749, 784, 805
TatI WGTACW 2 cut(s) 600, 912
TauI GCSGC 9 cut(s) 243, 387, 456, 462, 577, 612, 686, 721, 904
TfiI GAWTC 2 cut(s) 7, 535
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseFI GTSAC 2 cut(s) 197, 475
TseI GCWGC 8 cut(s) 138, 381, 387, 456, 494, 766, 769, 835
Tsp45I GTSAC 2 cut(s) 197, 475
TspDTI ATGAA 2 cut(s) 68, 753
TspGWI ACGGA 3 cut(s) 433, 537, 813
Tth111I GACNNNGTC 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 370
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 2 cut(s) 784, 805
XhoI CTCGAG 1 cut(s) 254
XspI CTAG 3 cut(s) 231, 585, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.