FvH4_7g26430

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003479
Physical Location & Seq
Reverse (-)
19968966 .. 19969637
672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26430.t1

Sequence Viewer

Length: 330 bp
ATGGAGAGGGGAGGCTTTGTGGTTTTGATGATGTGCTTGTTGTGCTTGGTGAGTGTGGTTCCAATGGCAAAGGGAGCCGATACAACTCCAAGTGAGTGTAAGAGGGAGAAGAATCTTCTGGTTGGTGCATGCAAGCCAGTTATAGCTGGGTTTAATCCGTCTGCAGCCTGCTGCCAACGAGTTAGGGTTACTCATGCCGAGTGTGTCTGTCCTTACCTTAGTCCCAAGGTTGCCAATTTGATCAATGTCAATCGCAGCATCAGGCAAATCCAAGGTTGCGGAAGGACTGTGCCTCACAACTTCAAGTGTGGAAGTGTCACCACTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

110

Amino Acids

11.69

Weight (kDa)

9.19

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 16 - 103 1.3e-08 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 164, 171, 255
AsuHPI GGTGA 2 cut(s) 61, 310
BbvI GCAGC 3 cut(s) 158, 176, 267
BclI TGATCA 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 165, 172, 256
BlsI GCNGC 3 cut(s) 166, 173, 257
BmiI GGNNCC 2 cut(s) 60, 76
BmsI GCATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 225, 271
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 225, 271
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 158, 176, 267
BseYI CCCAGC 1 cut(s) 146
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 60, 76
BspMAI CTGCAG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 225, 271
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 225, 271
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 130, 134, 169
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 42, 74
BstNSI RCATGY 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 158, 176, 267
Cac8I GCNNGC 3 cut(s) 130, 134, 169
CviAII CATG 2 cut(s) 129, 194
CviJI RGCY 5 cut(s) 15, 77, 136, 146, 167
CviKI_1 RGCY 5 cut(s) 15, 77, 136, 146, 167
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 225, 271
EcoT14I CCWWGG 2 cut(s) 225, 271
ErhI CCWWGG 2 cut(s) 225, 271
FaeI CATG 2 cut(s) 132, 197
FaiI YATR 4 cut(s) 130, 143, 195, 328
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 128, 193
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 165, 172, 256
Fsp4HI GCNGC 3 cut(s) 165, 172, 256
GluI GCNGC 3 cut(s) 165, 172, 256
GsaI CCCAGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 132, 197
HinfI GANTC 1 cut(s) 112
HphI GGTGA 2 cut(s) 61, 310
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 128, 132, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 74
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 2 cut(s) 132, 197
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 104, 132, 150, 181, 247
Lsp1109I GCAGC 3 cut(s) 158, 176, 267
LweI GCATC 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 187, 316
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 107, 121
MluCI AATT 1 cut(s) 235
MnlI CCTC 3 cut(s) 5, 96, 303
MseI TTAA 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 42, 74
NdeII GATC 1 cut(s) 240
NlaIII CATG 2 cut(s) 132, 197
NlaIV GGNNCC 2 cut(s) 60, 76
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 166, 173, 257
PspFI CCCAGC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 60, 76
PstI CTGCAG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 165, 172, 256
Sau3AI GATC 1 cut(s) 240
SetI ASST 4 cut(s) 148, 219, 231, 277
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 132
Sse9I AATT 1 cut(s) 235
SsiI CCGC 1 cut(s) 279
StyI CCWWGG 2 cut(s) 225, 271
TaaI ACNGT 1 cut(s) 289
TasI AATT 1 cut(s) 235
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 164, 171, 255
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 147
XceI RCATGY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.