Rh1DG378500

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003479
Physical Location & Seq
Reverse (-)
60070658 .. 60070990
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG378500.1

Sequence Viewer

Length: 258 bp
ATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACCCATGTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

8.68

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 7 - 79 2.7e-09 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AclWI GGATC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 200, 232
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 43, 157
AluI AGCT 2 cut(s) 43, 157
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 109, 238
AxyI CCTNAGG 1 cut(s) 110
BbvI GCAGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmsI GCATC 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 22
Bse21I CCTNAGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 86
BslFI GGGAC 2 cut(s) 20, 161
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 20, 161
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 22
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 58, 159
BstDEI CTNAG 1 cut(s) 110
BstEII GGTNACC 1 cut(s) 115
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 62, 105
BstPI GGTNACC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 58, 159
CviAII CATG 2 cut(s) 122, 255
CviJI RGCY 3 cut(s) 21, 43, 157
CviKI_1 RGCY 3 cut(s) 21, 43, 157
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
FaeI CATG 2 cut(s) 125, 258
FaiI YATR 5 cut(s) 94, 123, 136, 144, 256
FaqI GGGAC 2 cut(s) 20, 161
FatI CATG 2 cut(s) 121, 254
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 125, 258
HindIII AAGCTT 2 cut(s) 41, 155
HphI GGTGA 2 cut(s) 109, 238
HpyAV CCTTC 2 cut(s) 194, 204
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 174, 181
HpyCH4V TGCA 2 cut(s) 60, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 105
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 174, 181
Hsp92II CATG 2 cut(s) 125, 258
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 35, 60
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 174, 181
MaeIII GTNAC 3 cut(s) 70, 115, 145
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MluCI AATT 1 cut(s) 195
MnlI CCTC 3 cut(s) 25, 97, 231
MseI TTAA 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 62, 105
NdeII GATC 1 cut(s) 82
NlaIII CATG 2 cut(s) 125, 258
NmuCI GTSAC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 82
SetI ASST 5 cut(s) 45, 159, 177, 184, 205
SfaNI GCATC 1 cut(s) 43
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 207
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 2 cut(s) 177, 184
TasI AATT 1 cut(s) 195
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 115
TspRI CASTG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.