MD07G1239500.v1.1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003479
Physical Location & Seq
Reverse (-)
31087795 .. 31088556
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1239500.v1.1.491

Sequence Viewer

Length: 324 bp
ATGAGGCATGCAGCAAGCTGCAGTGTGGTATTAGGGTTCATAATATTATGCGTGGTGATGGTAGTGGATGCGGACACGAGCCCTAGCCAGTGCAAGCAGGAGAACAACATTCTGATTAGTGCATGCAAGCCAGTTTTCATGGGGCAGAAGGCTTCTGCATACTGCTGCCAACGATTTAGGATTATGCACTTCGAGTGCGTCTGCCCTCTCGTTACTCCCAAGCTCACTAATTTGATCAACGTCCAGCATACCATTCAGCAGATTCGAGCTTGCGGAAAGCGTATCCCTCACAACTTCAAGTGTGGTAGTATCACCACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

108

Amino Acids

11.84

Weight (kDa)

9.05

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 24 - 101 5.1e-08 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 273
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 3 cut(s) 18, 223, 269
AluI AGCT 3 cut(s) 18, 223, 269
ApeKI GCWGC 3 cut(s) 11, 18, 165
AsuHPI GGTGA 2 cut(s) 67, 304
BanII GRGCYC 1 cut(s) 83
BarI GAAGNNNNNNTAC 1 cut(s) 301
BauI CACGAG 1 cut(s) 76
BbvI GCAGC 3 cut(s) 5, 23, 152
BccI CCATC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 234
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 19
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 3 cut(s) 12, 19, 166
BlsI GCNGC 3 cut(s) 13, 20, 167
BmsI GCATC 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 88, 131
BseGI GGATG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 88, 131
BseXI GCAGC 3 cut(s) 5, 23, 152
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 2 cut(s) 71, 273
BspMAI CTGCAG 1 cut(s) 23
BsrI ACTGG 2 cut(s) 88, 131
BssMI GATC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 9, 16, 95, 124, 128, 271
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 11, 126
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 5, 23, 152
BsuI GTATCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 95
Cac8I GCNNGC 6 cut(s) 9, 16, 95, 124, 128, 271
CseI GACGC 1 cut(s) 187
CviAII CATG 3 cut(s) 8, 123, 139
CviJI RGCY 7 cut(s) 18, 81, 87, 130, 152, 223, 269
CviKI_1 RGCY 7 cut(s) 18, 81, 87, 130, 152, 223, 269
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 3 cut(s) 11, 126, 142
FaiI YATR 9 cut(s) 9, 41, 49, 124, 140, 160, 185, 249, 322
FatI CATG 3 cut(s) 7, 122, 138
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 12, 19, 166
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 12, 19, 166
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 12, 19, 166
HgaI GACGC 1 cut(s) 187
Hin1II CATG 3 cut(s) 11, 126, 142
HinfI GANTC 1 cut(s) 262
HphI GGTGA 2 cut(s) 67, 304
Hpy188I TCNGA 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 7 cut(s) 11, 21, 93, 122, 126, 158, 187
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 11, 126, 142
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 83, 101, 144, 257
Lsp1109I GCAGC 3 cut(s) 5, 23, 152
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 216, 297
NdeII GATC 1 cut(s) 234
NlaIII CATG 3 cut(s) 11, 126, 142
NspI RCATGY 2 cut(s) 11, 126
PaeI GCATGC 2 cut(s) 11, 126
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 13, 20, 167
PstI CTGCAG 1 cut(s) 23
SatI GCNGC 3 cut(s) 12, 19, 166
Sau3AI GATC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 83
SetI ASST 4 cut(s) 20, 225, 243, 271
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 19
SphI GCATGC 2 cut(s) 11, 126
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 71, 273
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 84
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 192, 265
TasI AATT 1 cut(s) 229
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 2 cut(s) 28, 95
TseI GCWGC 3 cut(s) 11, 18, 165
TspDTI ATGAA 3 cut(s) 28, 127, 309
TspRI CASTG 2 cut(s) 28, 95
XceI RCATGY 2 cut(s) 11, 126
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.