RLG00000026862

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003479
Physical Location & Seq
Forward (+)
6584883 .. 6585329
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026862

Sequence Viewer

Length: 342 bp
ATGGTGATGGTGATCAGGGGCTTGATGACGATATGCTTAGTTTCTTGCTTGGTGAATGTGTTGGATTTGGTTCCGAAGGTGCAGGCGGACACGACGCCGAGGCAGTGCAAGCAGGAGAAGAAGCTTCTCGTGAACGAGTGCAAGGCGCTTATTCTTGGGGGCAATAAGGTTTCTGCAAACTGCTGCAAATTGGTTAGGAACATGCATTTTGAGTGTGTGTGCCCCATGATTACTCCCAAGCTCGCTAATTTGATCAATGTCCCTAGCCTCGTTAGGAAGATTGAAGCTTATGGAAGGCGAGTCCCTCGCAACGTCAATTGTGGTATCACCACTCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

114

Amino Acids

12.49

Weight (kDa)

9.47

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 3 cut(s) 124, 241, 287
AluI AGCT 3 cut(s) 124, 241, 287
ApeKI GCWGC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 4 cut(s) 16, 22, 64, 319
BaeGI GKGCMC 1 cut(s) 224
BauI CACGAG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 170
BclI TGATCA 2 cut(s) 12, 252
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 98
BseJI GATNNNNATC 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 245, 287
BsmFI GGGAC 2 cut(s) 245, 287
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 12, 252
BspACI CCGC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 12, 252
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 84, 110, 243
BstDEI CTNAG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 15, 255
BstMBI GATC 2 cut(s) 12, 252
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 84, 110, 243
CfoI GCGC 1 cut(s) 148
CseI GACGC 1 cut(s) 103
CviAII CATG 2 cut(s) 202, 226
CviJI RGCY 5 cut(s) 21, 124, 241, 267, 287
CviKI_1 RGCY 5 cut(s) 21, 124, 241, 267, 287
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 14, 254
DpnII GATC 2 cut(s) 12, 252
EciI GGCGGA 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 2 cut(s) 205, 229
FaiI YATR 5 cut(s) 34, 203, 227, 291, 340
FaqI GGGAC 2 cut(s) 245, 287
FatI CATG 2 cut(s) 201, 225
FbaI TGATCA 2 cut(s) 12, 252
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 149
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 205, 229
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 2 cut(s) 122, 285
HinfI GANTC 1 cut(s) 300
HphI GGTGA 4 cut(s) 16, 22, 64, 319
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 70, 288
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 82, 108, 141, 176, 186, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 205, 229
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 12, 252
Kzo9I GATC 2 cut(s) 12, 252
LpnPI CCDG 2 cut(s) 68, 98
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 312
MalI GATC 2 cut(s) 14, 254
MboI GATC 2 cut(s) 12, 252
MboII GAAGA 2 cut(s) 130, 289
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 3 cut(s) 188, 247, 316
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 93, 278, 315
Mph1103I ATGCAT 1 cut(s) 207
MunI CAATTG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 12, 252
NlaIII CATG 2 cut(s) 205, 229
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 207
NspI RCATGY 1 cut(s) 205
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 72
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 12, 252
SchI GAGTC 1 cut(s) 309
SduI GDGCHC 1 cut(s) 224
SetI ASST 6 cut(s) 81, 126, 171, 243, 289, 315
Sse9I AATT 3 cut(s) 188, 247, 316
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 264
TaiI ACGT 1 cut(s) 315
TasI AATT 3 cut(s) 188, 247, 316
TscAI CASTG 1 cut(s) 110
TseI GCWGC 1 cut(s) 183
TspRI CASTG 1 cut(s) 110
XceI RCATGY 1 cut(s) 205
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.