Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003479

Physical Location & Seq

Genomic Coordinates Forward (+)

5839439 .. 5840690

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGGGAAGAAGGCCATCGTGGTCGTCACCGGCTTTCGGGCTCTTATTAGTTCTTGTGGTTGTTCTTGGCATGGGGGAGGTGATCAAAATGGGTGGTGCAGCCCCAAGTGCTGCCCAGTGCCATGAGGAGAGGGCCCTTGCGGTTACTGCATGCATGCCGGTGGTGTTTGGTAAGCTTCCAACGCCAGAGTGTTGCGAACGCGCAAGGGTCAGCCATACTGAATGCATATGCCCTGTCGTCACCCCCAAGGTTGCAGCCACCATTCACGACATCAACCGCGCCGTCCGCCTCATTGAAGGGTGTGGTAGGAGGGTGCCTCGCCACTTCAAGTGTGGGAGCATCACCACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

119

Amino Acids

12.6

Weight (kDa)

9.27

Isoelectric Point (pI)

67.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26400 FvH4_7g26430
malus_domestica	MD07G1239500.v1.1 MD07G1239700.v1.1 MD07G1239800.v1.1
prunus_persica	Prupe.5G054600_v2.0.a1 Prupe.7G057100_v2.0.a1
pyrus_communis	pycom07g21530 pycom07g21620
rosa_chinensis	RchiOBHm_Chr1g0328141 RchiOBHm_Chr1g0328171 RchiOBHm_Chr1g0372951 RchiOBHm_Chr1g0372991
rosa_laevigata	RLG00000026859 RLG00000026862
rosa_multiflora	Rmu_sc0002809.1_g000022 Rmu_sc0004646.1_g000018 Rmu_ssc0000425.1_g000013
rosa_roxburghii	Rroxscaffold_4G00284570
rosa_rugosa	Rorug01G0375200 Rorug01G0375400
rosa_samantha	Rh1AG090900 Rh1AG091000 Rh1AG383700 Rh1BG347600 Rh1CG087400 Rh1CG087600 Rh1CG360900 Rh1CG361000 Rh1DG094300 Rh1DG094500 Rh1DG378500
rosa_wichuraiana	Rw1G007050 Rw1G007060 Rw1G033810 Rw1G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	2 cut(s)	204, 282
AciI	CCGC	3 cut(s)	143, 280, 289
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	299, 331
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	14, 135
ApaI	GGGCCC	1 cut(s)	139
ApeKI	GCWGC	3 cut(s)	101, 113, 257
AspLEI	GCGC	2 cut(s)	206, 284
AspS9I	GGNCC	2 cut(s)	135, 136
AsuHPI	GGTGA	4 cut(s)	21, 94, 235, 337
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	45, 139
BbvI	GCAGC	3 cut(s)	100, 113, 269
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	84
BisI	GCNGC	3 cut(s)	102, 114, 258
BlsI	GCNGC	3 cut(s)	103, 115, 259
BmgT120I	GGNCC	2 cut(s)	135, 136
BmiI	GGNNCC	2 cut(s)	137, 318
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	2 cut(s)	31, 160
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	100, 113, 269
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	204, 282
BshFI	GGCC	2 cut(s)	16, 137
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	32, 161
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	16, 137
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	45, 139
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	143, 280, 289
BspANI	GGCC	2 cut(s)	16, 137
BspFNI	CGCG	2 cut(s)	204, 282
BspLI	GGNNCC	2 cut(s)	137, 318
BspT107I	GGYRCC	1 cut(s)	316
BsrFI	RCCGGY	2 cut(s)	31, 160
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	2 cut(s)	31, 160
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	154, 158
BstFNI	CGCG	2 cut(s)	204, 282
BstHHI	GCGC	2 cut(s)	206, 284
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 149, 184, 288
BstNSI	RCATGY	2 cut(s)	156, 160
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	2 cut(s)	204, 282
BstV1I	GCAGC	3 cut(s)	100, 113, 269
BsuRI	GGCC	2 cut(s)	16, 137
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	154, 158
CfoI	GCGC	2 cut(s)	206, 284
Cfr10I	RCCGGY	2 cut(s)	31, 160
Cfr13I	GGNCC	2 cut(s)	135, 136
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	5 cut(s)	73, 125, 153, 157, 354
CviJI	RGCY	8 cut(s)	16, 35, 43, 104, 137, 178, 216, 260
CviKI_1	RGCY	8 cut(s)	16, 35, 43, 104, 137, 178, 216, 260
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	45, 139
EcoO109I	RGGNCCY	2 cut(s)	135, 136
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	2 cut(s)	158, 230
EcoT38I	GRGCYC	2 cut(s)	45, 139
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	76, 128, 156, 160, 357
FaiI	YATR	8 cut(s)	74, 126, 154, 158, 219, 230, 232, 355
FatI	CATG	5 cut(s)	72, 124, 152, 156, 353
FauNDI	CATATG	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	102, 114, 258
FriOI	GRGCYC	2 cut(s)	45, 139
Fsp4HI	GCNGC	3 cut(s)	102, 114, 258
GlaI	GCGC	2 cut(s)	205, 283
GluI	GCNGC	3 cut(s)	102, 114, 258
HaeIII	GGCC	2 cut(s)	16, 137
HapII	CCGG	2 cut(s)	32, 161
HhaI	GCGC	2 cut(s)	206, 284
Hin1II	CATG	5 cut(s)	76, 128, 156, 160, 357
Hin6I	GCGC	2 cut(s)	204, 282
HinP1I	GCGC	2 cut(s)	204, 282
HindIII	AAGCTT	1 cut(s)	176
HpaII	CCGG	2 cut(s)	32, 161
HphI	GGTGA	4 cut(s)	21, 94, 235, 337
Hpy188III	TCNNGA	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	6, 293
HpyCH4V	TGCA	5 cut(s)	101, 152, 156, 228, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 149, 184, 288
Hsp92II	CATG	5 cut(s)	76, 128, 156, 160, 357
HspAI	GCGC	2 cut(s)	204, 282
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	5 cut(s)	45, 131, 174, 201, 249
Lsp1109I	GCAGC	3 cut(s)	100, 113, 269
LweI	GCATC	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	27, 145, 241
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	45, 139
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	73, 121, 126, 302, 306, 330
Mph1103I	ATGCAT	2 cut(s)	158, 230
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	2 cut(s)	32, 161
Mva1269I	GAATGC	1 cut(s)	230
MvnI	CGCG	2 cut(s)	204, 282
MwoI	GCNNNNNNNGC	4 cut(s)	110, 149, 184, 288
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	5 cut(s)	76, 128, 156, 160, 357
NlaIV	GGNNCC	2 cut(s)	137, 318
NmuCI	GTSAC	2 cut(s)	27, 241
NsiI	ATGCAT	2 cut(s)	158, 230
NspI	RCATGY	2 cut(s)	156, 160
PaeI	GCATGC	2 cut(s)	156, 160
PctI	GAATGC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	103, 115, 259
PspN4I	GGNNCC	2 cut(s)	137, 318
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	135, 136
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	3 cut(s)	102, 114, 258
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	135, 136
SduI	GDGCHC	2 cut(s)	45, 139
SetI	ASST	3 cut(s)	84, 180, 255
SfaNI	GCATC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	2 cut(s)	156, 160
SsiI	CCGC	3 cut(s)	143, 280, 289
StyI	CCWWGG	1 cut(s)	249
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	27, 241
TseI	GCWGC	3 cut(s)	101, 113, 257
Tsp45I	GTSAC	2 cut(s)	27, 241
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	125
XceI	RCATGY	2 cut(s)	156, 160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
Zsp2I	ATGCAT	2 cut(s)	158, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.