Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003479

Physical Location & Seq

Genomic Coordinates Reverse (-)

23273704 .. 23274154

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGGCAGCAGGCTCATTGGCCGTGATCATATGCTTGTTATGGTGTGGTGTTTGGGAGGTGGTTCCGATGGCAAAGGCGGACACGTCGCCGAGCCAGTGTAAGCAGGAGGTGGGCCGTCTCCGTGATGAATGCAGGAGCGCTATACTTCCAGGACGCAATCCTTCTGCGCTCTGCTGCCAAATTGTTAGGGCTGCTCATGTTGAGTGTGTCTGCCCTTATGTCACCCCCAAGGTGGCCAATTTGATCCCCGTCGGACGTACAATTAAGCAGATTGAAGGTTGTGGAAGAAGTGTCCCTCGCAACTTCAAGTGTGGGAGCATCACCACCCCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

113

Amino Acids

12.05

Weight (kDa)

9.07

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26400 FvH4_7g26430
malus_domestica	MD07G1239500.v1.1 MD07G1239700.v1.1 MD07G1239800.v1.1
prunus_persica	Prupe.5G054600_v2.0.a1 Prupe.7G057100_v2.0.a1
pyrus_communis	pycom07g21530 pycom07g21620
rosa_chinensis	RchiOBHm_Chr1g0328141 RchiOBHm_Chr1g0328171 RchiOBHm_Chr1g0372951 RchiOBHm_Chr1g0372991
rosa_laevigata	RLG00000026859 RLG00000026862
rosa_multiflora	Rmu_sc0002809.1_g000022 Rmu_sc0004646.1_g000018 Rmu_ssc0000425.1_g000013
rosa_roxburghii	Rroxscaffold_4G00284570
rosa_rugosa	Rorug01G0375200 Rorug01G0375400
rosa_samantha	Rh1AG090900 Rh1AG091000 Rh1AG383700 Rh1BG347600 Rh1CG087400 Rh1CG087600 Rh1CG360900 Rh1CG361000 Rh1DG094300 Rh1DG094500 Rh1DG378500
rosa_wichuraiana	Rw1G007050 Rw1G007060 Rw1G033810 Rw1G033820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 332
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	21, 237
AfaI	GTAC	1 cut(s)	262
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	278, 310
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	241
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	3 cut(s)	21, 115, 237
ApeKI	GCWGC	3 cut(s)	8, 177, 194
AspLEI	GCGC	2 cut(s)	143, 172
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	217, 316
BalI	TGGCCA	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	20, 164, 181
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	8, 102
BciT130I	CCWGG	1 cut(s)	153
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	3 cut(s)	9, 178, 195
BlsI	GCNGC	3 cut(s)	10, 179, 196
Bme1390I	CCNGG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	20, 164, 181
BshFI	GGCC	3 cut(s)	23, 117, 239
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	23, 117, 239
Bsp143I	GATC	2 cut(s)	27, 246
BspACI	CCGC	2 cut(s)	80, 332
BspANI	GGCC	3 cut(s)	23, 117, 239
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	27, 246
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 172
BstKTI	GATC	2 cut(s)	30, 249
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	27, 246
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	20, 164, 181
BsuRI	GGCC	3 cut(s)	23, 117, 239
BtrI	CACGTC	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	143, 172
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	200, 336
CviJI	RGCY	6 cut(s)	15, 23, 96, 117, 194, 239
CviKI_1	RGCY	6 cut(s)	15, 23, 96, 117, 194, 239
CviQI	GTAC	1 cut(s)	261
DpnI	GATC	2 cut(s)	29, 248
DpnII	GATC	2 cut(s)	27, 246
EaeI	YGGCCR	2 cut(s)	21, 237
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	203, 339
FaiI	YATR	7 cut(s)	32, 34, 43, 146, 201, 222, 337
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	199, 335
FauNDI	CATATG	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	9, 178, 195
Fsp4HI	GCNGC	3 cut(s)	9, 178, 195
GlaI	GCGC	2 cut(s)	142, 171
GluI	GCNGC	3 cut(s)	9, 178, 195
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	23, 117, 239
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	2 cut(s)	143, 172
Hin1II	CATG	2 cut(s)	203, 339
Hin6I	GCGC	2 cut(s)	141, 170
HinP1I	GCGC	2 cut(s)	141, 170
HphI	GGTGA	2 cut(s)	217, 316
Hpy188I	TCNGA	2 cut(s)	69, 257
Hpy99I	CGWCG	2 cut(s)	91, 257
HpyAV	CCTTC	2 cut(s)	174, 272
HpyCH4IV	ACGT	2 cut(s)	86, 259
HpyCH4V	TGCA	1 cut(s)	135
HpySE526I	ACGT	2 cut(s)	86, 259
Hsp92II	CATG	2 cut(s)	203, 339
HspAI	GCGC	2 cut(s)	141, 170
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	27, 246
LmnI	GCTCC	2 cut(s)	138, 318
LpnPI	CCDG	5 cut(s)	92, 110, 121, 138, 165
Lsp1109I	GCAGC	3 cut(s)	20, 164, 181
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	2 cut(s)	86, 259
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	29, 248
MboI	GATC	2 cut(s)	27, 246
MboII	GAAGA	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	183, 241, 264
MluNI	TGGCCA	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	52, 103, 309
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	32
NdeII	GATC	2 cut(s)	27, 246
NlaIII	CATG	2 cut(s)	203, 339
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	10, 179, 196
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	9, 178, 195
Sau3AI	GATC	2 cut(s)	27, 246
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	6 cut(s)	63, 89, 114, 237, 262, 283
SfaNI	GCATC	1 cut(s)	330
Sse9I	AATT	3 cut(s)	183, 241, 264
SsiI	CCGC	2 cut(s)	80, 332
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	2 cut(s)	89, 262
TasI	AATT	3 cut(s)	183, 241, 264
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	8, 177, 194
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.