Rh1BG347600

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003479
Physical Location & Seq
Reverse (-)
48086593 .. 48087181
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG347600.1

Sequence Viewer

Length: 312 bp
ATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCGCCGTTCCGGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACTCATCTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

103

Amino Acids

10.92

Weight (kDa)

8.57

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 21 - 97 3.6e-09 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 261
AclWI GGATC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 254, 286
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 2 cut(s) 97, 211
AluI AGCT 2 cut(s) 97, 211
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 76
Bse21I CCTNAGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 74, 215
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 74, 215
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 39, 261
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 112, 213
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 116, 159
BstV1I GCAGC 1 cut(s) 140
Bsu36I CCTNAGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 112, 213
CviAII CATG 1 cut(s) 309
CviJI RGCY 3 cut(s) 75, 97, 211
CviKI_1 RGCY 3 cut(s) 75, 97, 211
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 164
FaeI CATG 1 cut(s) 312
FaiI YATR 4 cut(s) 148, 190, 198, 310
FaqI GGGAC 2 cut(s) 74, 215
FatI CATG 1 cut(s) 308
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 312
HindIII AAGCTT 2 cut(s) 95, 209
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 248, 258
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 228, 235
HpyCH4V TGCA 2 cut(s) 114, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 159
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 228, 235
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 60, 89, 114
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 97
MaeII ACGT 2 cut(s) 228, 235
MaeIII GTNAC 3 cut(s) 124, 169, 199
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MluCI AATT 1 cut(s) 249
MnlI CCTC 3 cut(s) 79, 151, 285
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 116, 159
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 136
SetI ASST 5 cut(s) 99, 213, 231, 238, 259
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 39, 261
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 231, 238
TasI AATT 1 cut(s) 249
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 169
TspRI CASTG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.