Rh1AG383700

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003479
Physical Location & Seq
Reverse (-)
61491887 .. 61493654
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG383700.1

Sequence Viewer

Length: 705 bp
ATGATGAGGCCAGGATTATTTGGTTTGATGGCATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCGGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACTCATGTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAATCTTCCAACTAGATCCCGATCCACCGACAATATCAACCACCGTCCCCCCGTCCTCCAGATCTCCACCACCTCTGTCGCCGCCGCCGGATCCATCAAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCTCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCATCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

234

Amino Acids

25.73

Weight (kDa)

9.5

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 105 2.9e-09 Probable lipid transfer
PRA1 PF03208 166 - 231 1.4e-14 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 459, 537
AccII CGCG 2 cut(s) 582, 588
AclWI GGATC 6 cut(s) 155, 327, 333, 402, 415, 446
AcyI GRCGYC 1 cut(s) 570
AfiI CCNNNNNNNGG 3 cut(s) 106, 435, 517
AgsI TTSAA 2 cut(s) 278, 310
AjnI CCWGG 5 cut(s) 10, 420, 447, 515, 668
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 3 cut(s) 121, 235, 526
AluI AGCT 3 cut(s) 121, 235, 526
AlwI GGATC 6 cut(s) 155, 327, 333, 402, 415, 446
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 6 cut(s) 8, 423, 450, 496, 519, 655
ApeKI GCWGC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 469, 628
AvaI CYCGRG 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 188
BamHI GGATCC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 22, 419, 632
BceAI ACGGC 2 cut(s) 511, 587
BciT130I CCWGG 5 cut(s) 12, 422, 449, 517, 670
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 511
BglI GCCNNNNNGGC 1 cut(s) 449
BglII AGATCT 1 cut(s) 378
BisI GCNGC 5 cut(s) 178, 399, 402, 511, 666
BlsI GCNGC 5 cut(s) 179, 400, 403, 512, 667
Bme1390I CCNGG 5 cut(s) 12, 422, 449, 517, 670
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 2 cut(s) 69, 409
BmrFI CCNGG 5 cut(s) 12, 422, 449, 517, 670
BmsI GCATC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 6 cut(s) 420, 434, 447, 515, 516, 652
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 4 cut(s) 485, 515, 632, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 435, 517
Bse1I ACTGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 337
BseBI CCWGG 5 cut(s) 12, 422, 449, 517, 670
BseDI CCNNGG 6 cut(s) 420, 434, 447, 515, 516, 652
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 3 cut(s) 106, 435, 517
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 125, 650
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 2 cut(s) 429, 504
Bsh1236I CGCG 2 cut(s) 582, 588
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 6 cut(s) 10, 425, 452, 498, 521, 657
BsiEI CGRYCG 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 2 cut(s) 71, 405
BslFI GGGAC 4 cut(s) 98, 239, 348, 403
BslI CCNNNNNNNGG 3 cut(s) 106, 435, 517
BsmFI GGGAC 4 cut(s) 98, 239, 348, 403
BsnI GGCC 6 cut(s) 10, 425, 452, 498, 521, 657
BsoBI CYCGRG 1 cut(s) 554
Bsp143I GATC 6 cut(s) 160, 332, 338, 378, 407, 438
BspANI GGCC 6 cut(s) 10, 425, 452, 498, 521, 657
BspFNI CGCG 2 cut(s) 582, 588
BspLI GGNNCC 2 cut(s) 69, 409
BspPI GGATC 6 cut(s) 155, 327, 333, 402, 415, 446
BspQI GCTCTTC 1 cut(s) 680
BsrBI CCGCTC 2 cut(s) 459, 537
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 6 cut(s) 420, 434, 447, 515, 516, 652
BssMI GATC 6 cut(s) 160, 332, 338, 378, 407, 438
BssNI GRCGYC 1 cut(s) 570
Bst2UI CCWGG 5 cut(s) 12, 422, 449, 517, 670
Bst4CI ACNGT 3 cut(s) 295, 362, 487
Bst6I CTCTTC 3 cut(s) 638, 680, 692
BstACI GRCGYC 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 34, 136, 237, 528
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 582, 588
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 163, 335, 341, 381, 410, 441
BstMBI GATC 6 cut(s) 160, 332, 338, 378, 407, 438
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 5 cut(s) 140, 183, 449, 527, 608
BstNI CCWGG 5 cut(s) 12, 422, 449, 517, 670
BstNSI RCATGY 1 cut(s) 36
BstSCI CCNGG 5 cut(s) 10, 420, 447, 515, 668
BstUI CGCG 2 cut(s) 582, 588
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 3 cut(s) 332, 378, 407
BstYI RGATCY 3 cut(s) 332, 378, 407
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 6 cut(s) 10, 425, 452, 498, 521, 657
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 4 cut(s) 34, 136, 237, 528
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 519
CseI GACGC 3 cut(s) 571, 577, 578
CviAII CATG 2 cut(s) 33, 200
DdeI CTNAG 1 cut(s) 188
DpnI GATC 6 cut(s) 162, 334, 340, 380, 409, 440
DpnII GATC 6 cut(s) 160, 332, 338, 378, 407, 438
Eam1104I CTCTTC 3 cut(s) 638, 680, 692
EarI CTCTTC 3 cut(s) 638, 680, 692
EciI GGCGGA 2 cut(s) 529, 680
Eco147I AGGCCT 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 554
EcoRII CCWGG 5 cut(s) 10, 420, 447, 515, 668
FaeI CATG 2 cut(s) 36, 203
FaiI YATR 5 cut(s) 34, 172, 201, 214, 222
FaqI GGGAC 4 cut(s) 98, 239, 348, 403
FatI CATG 2 cut(s) 32, 199
Fnu4HI GCNGC 5 cut(s) 178, 399, 402, 511, 666
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 5 cut(s) 178, 399, 402, 511, 666
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 509
GluI GCNGC 5 cut(s) 178, 399, 402, 511, 666
GsaI CCCAGC 2 cut(s) 433, 508
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 6 cut(s) 10, 425, 452, 498, 521, 657
HapII CCGG 2 cut(s) 71, 405
HgaI GACGC 3 cut(s) 571, 577, 578
HhaI GCGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 2 cut(s) 36, 203
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 2 cut(s) 119, 233
HinfI GANTC 1 cut(s) 557
HpaII CCGG 2 cut(s) 71, 405
HphI GGTGA 2 cut(s) 469, 628
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 3 cut(s) 438, 568, 700
Hpy188III TCNNGA 2 cut(s) 336, 376
Hpy8I GTNNAC 1 cut(s) 592
Hpy99I CGWCG 4 cut(s) 572, 608, 611, 623
HpyAV CCTTC 7 cut(s) 272, 282, 463, 472, 553, 571, 655
HpyCH4III ACNGT 3 cut(s) 295, 362, 487
HpyCH4IV ACGT 2 cut(s) 252, 259
HpyCH4V TGCA 2 cut(s) 138, 170
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 183, 449, 527, 608
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 252, 259
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 2 cut(s) 36, 203
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 6 cut(s) 160, 332, 338, 378, 407, 438
LguI GCTCTTC 1 cut(s) 680
LmnI GCTCC 2 cut(s) 464, 542
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 252, 259
MaeIII GTNAC 3 cut(s) 148, 193, 223
MalI GATC 6 cut(s) 162, 334, 340, 380, 409, 440
MbiI CCGCTC 2 cut(s) 459, 537
MboI GATC 6 cut(s) 160, 332, 338, 378, 407, 438
MboII GAAGA 4 cut(s) 314, 625, 667, 679
MflI RGATCY 3 cut(s) 332, 378, 407
MluCI AATT 1 cut(s) 273
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 2 cut(s) 350, 591
MseI TTAA 1 cut(s) 267
MspI CCGG 2 cut(s) 71, 405
MspR9I CCNGG 5 cut(s) 12, 422, 449, 517, 670
MvaI CCWGG 5 cut(s) 12, 422, 449, 517, 670
MvnI CGCG 2 cut(s) 582, 588
MwoI GCNNNNNNNGC 5 cut(s) 140, 183, 449, 527, 608
NdeII GATC 6 cut(s) 160, 332, 338, 378, 407, 438
NlaIII CATG 2 cut(s) 36, 203
NlaIV GGNNCC 2 cut(s) 69, 409
NmeAIII GCCGAG 2 cut(s) 547, 633
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PasI CCCWGGG 1 cut(s) 516
PceI AGGCCT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 680
PcsI WCGNNNNNNNCGW 2 cut(s) 552, 615
PflFI GACNNNGTC 1 cut(s) 485
PkrI GCNGC 5 cut(s) 179, 400, 403, 512, 667
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 5 cut(s) 10, 420, 447, 515, 668
PspFI CCCAGC 2 cut(s) 429, 504
PspGI CCWGG 5 cut(s) 10, 420, 447, 515, 668
PspN4I GGNNCC 2 cut(s) 69, 409
PspPI GGNCC 1 cut(s) 519
PsuI RGATCY 3 cut(s) 332, 378, 407
PsyI GACNNNGTC 1 cut(s) 485
SapI GCTCTTC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 5 cut(s) 178, 399, 402, 511, 666
Sau3AI GATC 6 cut(s) 160, 332, 338, 378, 407, 438
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 5 cut(s) 12, 422, 449, 517, 670
SetI ASST 9 cut(s) 123, 237, 255, 262, 283, 392, 528, 600, 687
SfaNI GCATC 1 cut(s) 121
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 425
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 5 cut(s) 10, 420, 447, 515, 668
TaaI ACNGT 3 cut(s) 295, 362, 487
TaiI ACGT 2 cut(s) 255, 262
TasI AATT 1 cut(s) 273
TauI GCSGC 4 cut(s) 401, 404, 513, 668
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 485
XceI RCATGY 1 cut(s) 36
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.