Rw1G033810

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003479
Physical Location & Seq
Reverse (-)
61780333 .. 61782283
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033810.1

Sequence Viewer

Length: 339 bp
ATGATGAGGCCAGGATTATTTGGTTTGATGGCATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCAGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAGGGTCACTCATGTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACTGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

112

Amino Acids

12.18

Weight (kDa)

8.62

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 105 2.6e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 278, 310
AjnI CCWGG 1 cut(s) 10
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 2 cut(s) 121, 235
AluI AGCT 2 cut(s) 121, 235
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 12
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 71, 100
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 71, 100
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 10
BslFI GGGAC 2 cut(s) 98, 239
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 98, 239
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 71, 100
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 34, 136, 237
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 140, 183
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 34, 136, 237
CviAII CATG 2 cut(s) 33, 200
CviJI RGCY 4 cut(s) 10, 99, 121, 235
CviKI_1 RGCY 4 cut(s) 10, 99, 121, 235
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 36, 203
FaiI YATR 6 cut(s) 34, 172, 201, 214, 222, 337
FaqI GGGAC 2 cut(s) 98, 239
FatI CATG 2 cut(s) 32, 199
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 2 cut(s) 36, 203
HindIII AAGCTT 2 cut(s) 119, 233
HphI GGTGA 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 272, 282
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 252, 259
HpyCH4V TGCA 2 cut(s) 138, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 183
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 252, 259
Hsp92II CATG 2 cut(s) 36, 203
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 24, 84, 113, 138
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 252, 259
MaeIII GTNAC 3 cut(s) 148, 193, 223
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 273
MnlI CCTC 3 cut(s) 103, 175, 309
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 140, 183
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 36, 203
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 12
SetI ASST 5 cut(s) 123, 237, 255, 262, 283
SfaNI GCATC 1 cut(s) 121
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 255, 262
TasI AATT 1 cut(s) 273
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 193
TspRI CASTG 1 cut(s) 107
XceI RCATGY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.