Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Reverse (-)

21592766 .. 21594897

Gene Structure 2132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTCTGCAACTCTGGGAAACACTCAAGGAGGCGATCGTGGCCTACACGGGCCTATCTCCGGCGACCTTCTTCACACTCCTGGCTCTTCTCGTCGCCGCTTACCATATCCTCTCCGGGCTCTTTGGGCCGTCGGAGACCCACCACCAGCCCAGAAACCTGGAGGAGATGCAGCCTCTGCTGCCGCCGGTCCAGGTCGGCGAGGTCACCGAGGAGGAGCTCAAGCAGTACGACGGAACCGATCCCAAGAAGCCTCTGCTTATGGCCATCAAGGGTCAGATCTATGACGTGTCTCAGAGCAGGATGTTTTATGGACCTGGAGGTCCTTATGCTCTATTTGCAGGAAAAGATGCTAGCAGGGCTCTTGCAAAAATGTCTTTTGAAGACAAAGATCTCACTGGTGATACCACTGGTCTTGGTCCTTTTGAGCTTGAGGCCTTGCAAGATTGGGAATATAAGTTCATGAGTAAGTATGTCAAGGTTGGTACCATTAAGAGTACAGTTCCAGAAACTCAGGGGGAATCCACTAGTGATGCCCCTAAAGCTGAAGATGTTCCATCAGAAAGCCCAGCTGTTAAATCTGAGGAAACCTCCTCATCTACTGCTGATGCTAAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

208

Amino Acids

22.61

Weight (kDa)

4.63

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	70 - 164	1.3e-12	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
Acc65I	GGTACC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	485
AciI	CCGC	2 cut(s)	99, 185
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	230, 487, 499
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	4 cut(s)	81, 159, 192, 316
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	4 cut(s)	220, 430, 545, 572
AluI	AGCT	4 cut(s)	220, 430, 545, 572
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	131, 297
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	5 cut(s)	42, 52, 128, 264, 435
ApeKI	GCWGC	2 cut(s)	172, 181
Asp700I	GAANNNNTTC	1 cut(s)	552
Asp718I	GGTACC	1 cut(s)	485
AspS9I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	199, 413
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	4 cut(s)	190, 314, 323, 419
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	3 cut(s)	123, 222, 364
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	168, 184
BccI	CCATC	2 cut(s)	275, 565
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	4 cut(s)	83, 161, 194, 318
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	131, 297
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	354, 528
BglII	AGATCT	2 cut(s)	279, 391
BisI	GCNGC	4 cut(s)	99, 173, 182, 185
BlsI	GCNGC	4 cut(s)	100, 174, 183, 186
Bme1390I	CCNGG	5 cut(s)	83, 118, 161, 194, 318
Bme18I	GGWCC	4 cut(s)	190, 314, 323, 419
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
BmiI	GGNNCC	2 cut(s)	238, 487
BmrFI	CCNGG	5 cut(s)	83, 118, 161, 194, 318
BmsI	GCATC	4 cut(s)	159, 340, 523, 598
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpmI	CTGGAG	2 cut(s)	182, 339
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	3 cut(s)	11, 206, 452
BpuMI	CCSGG	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	403, 415
BseBI	CCWGG	4 cut(s)	83, 161, 194, 318
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	308, 527, 573
BseNI	ACTGG	2 cut(s)	403, 415
BseRI	GAGGAG	4 cut(s)	179, 227, 230, 583
BseXI	GCAGC	2 cut(s)	168, 184
BseYI	CCCAGC	1 cut(s)	568
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	44, 54, 130, 266, 437
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	62, 117, 188
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	131, 297
BsnI	GGCC	5 cut(s)	44, 54, 130, 266, 437
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	123, 222, 364
Bsp143I	GATC	4 cut(s)	36, 241, 279, 391
BspACI	CCGC	2 cut(s)	99, 185
BspANI	GGCC	5 cut(s)	44, 54, 130, 266, 437
BspCNI	CTCAG	3 cut(s)	307, 526, 574
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	238, 487
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	403, 415
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	36, 241, 279, 391
Bst2UI	CCWGG	4 cut(s)	83, 161, 194, 318
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	93, 612
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	4 cut(s)	294, 513, 582, 612
BstEII	GGTNACC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	39, 244, 282, 394
BstMAI	GTCTC	2 cut(s)	131, 297
BstMBI	GATC	4 cut(s)	36, 241, 279, 391
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 127, 178, 181, 338, 359, 542
BstNI	CCWGG	4 cut(s)	83, 161, 194, 318
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	5 cut(s)	81, 116, 159, 192, 316
BstV1I	GCAGC	2 cut(s)	168, 184
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	279, 391
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	2 cut(s)	279, 391
BsuRI	GGCC	5 cut(s)	44, 54, 130, 266, 437
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	396, 408
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
Csp6I	GTAC	3 cut(s)	229, 486, 498
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	1 cut(s)	463
CviQI	GTAC	3 cut(s)	229, 486, 498
DdeI	CTNAG	4 cut(s)	294, 513, 582, 612
DpnI	GATC	4 cut(s)	38, 243, 281, 393
DpnII	GATC	4 cut(s)	36, 241, 279, 391
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	93, 612
EarI	CTCTTC	2 cut(s)	93, 612
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	3 cut(s)	123, 222, 364
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	4 cut(s)	190, 314, 323, 419
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	567
Eco91I	GGTNACC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	205
EcoRII	CCWGG	4 cut(s)	81, 159, 192, 316
EcoT38I	GRGCYC	3 cut(s)	123, 222, 364
FaeI	CATG	1 cut(s)	466
FaiI	YATR	8 cut(s)	108, 263, 285, 312, 330, 456, 464, 474
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	99, 173, 182, 185
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	3 cut(s)	123, 222, 364
Fsp4HI	GCNGC	4 cut(s)	99, 173, 182, 185
FspBI	CTAG	2 cut(s)	354, 528
GluI	GCNGC	4 cut(s)	99, 173, 182, 185
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	2 cut(s)	182, 339
HaeIII	GGCC	5 cut(s)	44, 54, 130, 266, 437
HapII	CCGG	3 cut(s)	62, 117, 188
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	3 cut(s)	62, 117, 188
HphI	GGTGA	2 cut(s)	199, 413
Hpy188I	TCNGA	5 cut(s)	136, 279, 297, 562, 583
Hpy188III	TCNNGA	2 cut(s)	463, 506
Hpy99I	CGWCG	3 cut(s)	98, 136, 236
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	10, 172, 341, 368, 442
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 127, 178, 181, 338, 359, 542
HpyF3I	CTNAG	4 cut(s)	294, 513, 582, 612
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	36, 241, 279, 391
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	168, 184
LweI	GCATC	4 cut(s)	159, 340, 523, 598
MaeI	CTAG	2 cut(s)	354, 528
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	4 cut(s)	38, 243, 281, 393
MboI	GATC	4 cut(s)	36, 241, 279, 391
MboII	GAAGA	4 cut(s)	64, 80, 395, 560
MflI	RGATCY	2 cut(s)	279, 391
MhlI	GDGCHC	3 cut(s)	123, 222, 364
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	114
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	492, 576
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	3 cut(s)	62, 117, 188
MspR9I	CCNGG	5 cut(s)	83, 118, 161, 194, 318
MvaI	CCWGG	4 cut(s)	83, 161, 194, 318
MwoI	GCNNNNNNNGC	7 cut(s)	41, 127, 178, 181, 338, 359, 542
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	36, 241, 279, 391
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	2 cut(s)	238, 487
NmuCI	GTSAC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	100, 174, 183, 186
Ple19I	CGATCG	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	4 cut(s)	81, 159, 192, 316
PspEI	GGTNACC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	4 cut(s)	81, 159, 192, 316
PspN4I	GGNNCC	2 cut(s)	238, 487
PspPI	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	279, 391
PvuI	CGATCG	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	3 cut(s)	230, 487, 499
RsaNI	GTAC	3 cut(s)	229, 486, 498
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	492, 576
SatI	GCNGC	4 cut(s)	99, 173, 182, 185
Sau3AI	GATC	4 cut(s)	36, 241, 279, 391
Sau96I	GGNCC	6 cut(s)	52, 128, 190, 314, 323, 419
ScrFI	CCNGG	5 cut(s)	83, 118, 161, 194, 318
SduI	GDGCHC	3 cut(s)	123, 222, 364
SfaNI	GCATC	4 cut(s)	159, 340, 523, 598
SinI	GGWCC	4 cut(s)	190, 314, 323, 419
SmlI	CTYRAG	3 cut(s)	26, 221, 431
SmoI	CTYRAG	3 cut(s)	26, 221, 431
SpeI	ACTAGT	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	2 cut(s)	99, 185
SspMI	CTAG	2 cut(s)	354, 528
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	5 cut(s)	81, 116, 159, 192, 316
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	291
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	2 cut(s)	101, 187
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	492, 576
Tru9I	TTAA	2 cut(s)	492, 576
TscAI	CASTG	2 cut(s)	403, 415
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	172, 181
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	451
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	403, 415
VpaK11BI	GGWCC	4 cut(s)	190, 314, 323, 419
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	2 cut(s)	354, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.