Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Reverse (-)

64563128 .. 64565104

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTCTGCAACTCTGGGAAACACTGAAGGAGGCGATCGTGGTCTACACGGGCCTATCTCCGGCGACCTTCTTCACACTCCTGGCTCTGCTCTTCGCCGCTTACCATGTCCTTTCTGGGCTTTTTGGGCCGTCCGATACCCACCACCCCAGGAGCTTGGAGGAGATGCAGCCTCTTCAGCCGCCGGTCCAGCTCGGCGAGATCACCGCCGAGGAGCTCAAGCAGTACGACGGCTCCGATCCCAAGAAGCCTCTGCTCATGGCCATCAAGTCTCAGATCTATGACGTGTCTCAGAGCAGGATGTTTTATGGACCTGGAGGTCCTTATGCTCTATTTGCAGGAAAAGATGCTAGCAGGGCTCTTGCAAAAATGTCTTTCGAAGACAAAGATCTCACTGGTGATACTACTGGTCTTGGTCCTTTTGAGCTTGAGGCCTTGCAAGATTGGGAATATAAGTTCATGAGCAAGTATGTCAAGGTCGGAACCATTAAGAGTTCAGTTCCAGAAACTCAGGAGGAATCCACTAGTGAGGCCACCAAAGATGCTGAAGATGTACCATCAGAAATCCCAGCTGTCAAATCTGAGGAAACCTCCTCGCCTACTGCTGATGCCAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

207

Amino Acids

22.73

Weight (kDa)

4.62

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	69 - 163	1e-11	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	3 cut(s)	99, 182, 207
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	3 cut(s)	47, 161, 567
AfaI	GTAC	2 cut(s)	227, 555
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	285
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	81, 149, 313
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	5 cut(s)	156, 193, 217, 427, 572
AluI	AGCT	5 cut(s)	156, 193, 217, 427, 572
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	276, 294
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	5 cut(s)	52, 128, 261, 432, 531
ApeKI	GCWGC	1 cut(s)	169
AspS9I	GGNCC	6 cut(s)	52, 128, 187, 311, 320, 416
AsuHPI	GGTGA	2 cut(s)	196, 410
AsuII	TTCGAA	1 cut(s)	378
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	4 cut(s)	187, 311, 320, 416
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	219, 361
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	272, 565
BceAI	ACGGC	2 cut(s)	115, 247
BciT130I	CCWGG	3 cut(s)	83, 151, 315
BcoDI	GTCTC	2 cut(s)	276, 294
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	2 cut(s)	351, 525
BglII	AGATCT	2 cut(s)	276, 388
BisI	GCNGC	3 cut(s)	99, 170, 182
BlsI	GCNGC	3 cut(s)	100, 171, 183
Bme1390I	CCNGG	3 cut(s)	83, 151, 315
Bme18I	GGWCC	4 cut(s)	187, 311, 320, 416
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	6 cut(s)	52, 128, 187, 311, 320, 416
BmiI	GGNNCC	2 cut(s)	235, 484
BmrFI	CCNGG	3 cut(s)	83, 151, 315
BmsI	GCATC	4 cut(s)	156, 337, 532, 598
BmtI	GCTAGC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpmI	CTGGAG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	203, 449
BsaJI	CCNNGG	2 cut(s)	149, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	400, 412
BseBI	CCWGG	3 cut(s)	83, 151, 315
BseDI	CCNNGG	2 cut(s)	149, 210
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	287, 305, 524, 573
BseNI	ACTGG	2 cut(s)	400, 412
BseRI	GAGGAG	3 cut(s)	176, 227, 583
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	568
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	54, 130, 263, 434, 533
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	62, 185
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	276, 294
BsnI	GGCC	5 cut(s)	54, 130, 263, 434, 533
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	219, 361
Bsp143I	GATC	5 cut(s)	36, 201, 238, 276, 388
BspACI	CCGC	3 cut(s)	99, 182, 207
BspANI	GGCC	5 cut(s)	54, 130, 263, 434, 533
BspCNI	CTCAG	4 cut(s)	286, 304, 523, 574
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	235, 484
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	400, 412
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	149, 210
BssMI	GATC	5 cut(s)	36, 201, 238, 276, 388
Bst2UI	CCWGG	3 cut(s)	83, 151, 315
Bst6I	CTCTTC	2 cut(s)	98, 180
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	4 cut(s)	273, 291, 510, 582
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	5 cut(s)	39, 204, 241, 279, 391
BstMAI	GTCTC	2 cut(s)	276, 294
BstMBI	GATC	5 cut(s)	36, 201, 238, 276, 388
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 178, 190, 335, 356
BstNI	CCWGG	3 cut(s)	83, 151, 315
BstSCI	CCNGG	3 cut(s)	81, 149, 313
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	2 cut(s)	276, 388
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	276, 388
BsuRI	GGCC	5 cut(s)	54, 130, 263, 434, 533
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	23, 393
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	6 cut(s)	52, 128, 187, 311, 320, 416
Csp6I	GTAC	2 cut(s)	226, 554
CviAII	CATG	3 cut(s)	107, 259, 460
CviQI	GTAC	2 cut(s)	226, 554
DdeI	CTNAG	4 cut(s)	273, 291, 510, 582
DpnI	GATC	5 cut(s)	38, 203, 240, 278, 390
DpnII	GATC	5 cut(s)	36, 201, 238, 276, 388
DrdI	GACNNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	98, 180
EarI	CTCTTC	2 cut(s)	98, 180
Ecl136II	GAGCTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	219, 361
Eco47I	GGWCC	4 cut(s)	187, 311, 320, 416
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	3 cut(s)	47, 161, 567
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	81, 149, 313
EcoT38I	GRGCYC	2 cut(s)	219, 361
FaeI	CATG	3 cut(s)	110, 262, 463
FaiI	YATR	8 cut(s)	108, 260, 282, 309, 327, 453, 461, 471
FatI	CATG	3 cut(s)	106, 258, 459
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	99, 170, 182
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	2 cut(s)	219, 361
Fsp4HI	GCNGC	3 cut(s)	99, 170, 182
FspBI	CTAG	2 cut(s)	351, 525
GluI	GCNGC	3 cut(s)	99, 170, 182
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	5 cut(s)	54, 130, 263, 434, 533
HapII	CCGG	2 cut(s)	62, 185
Hin1II	CATG	3 cut(s)	110, 262, 463
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	2 cut(s)	62, 185
HphI	GGTGA	2 cut(s)	196, 410
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	7 cut(s)	136, 238, 276, 294, 482, 562, 583
Hpy188III	TCNNGA	3 cut(s)	460, 503, 512
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	22, 79
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	10, 169, 338, 365, 439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 178, 190, 335, 356
HpyF3I	CTNAG	4 cut(s)	273, 291, 510, 582
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	110, 262, 463
Kzo9I	GATC	5 cut(s)	36, 201, 238, 276, 388
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	153, 214, 239
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	4 cut(s)	156, 337, 532, 598
MaeI	CTAG	2 cut(s)	351, 525
MaeII	ACGT	1 cut(s)	285
MalI	GATC	5 cut(s)	38, 203, 240, 278, 390
MboI	GATC	5 cut(s)	36, 201, 238, 276, 388
MboII	GAAGA	5 cut(s)	64, 85, 167, 392, 560
MflI	RGATCY	2 cut(s)	276, 388
MhlI	GDGCHC	2 cut(s)	219, 361
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	62, 185
MspR9I	CCNGG	3 cut(s)	83, 151, 315
MvaI	CCWGG	3 cut(s)	83, 151, 315
MwoI	GCNNNNNNNGC	5 cut(s)	127, 178, 190, 335, 356
NdeII	GATC	5 cut(s)	36, 201, 238, 276, 388
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	110, 262, 463
NlaIV	GGNNCC	2 cut(s)	235, 484
NmeAIII	GCCGAG	2 cut(s)	174, 235
NspV	TTCGAA	1 cut(s)	378
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	100, 171, 183
Ple19I	CGATCG	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	81, 149, 313
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	3 cut(s)	81, 149, 313
PspN4I	GGNNCC	2 cut(s)	235, 484
PspPI	GGNCC	6 cut(s)	52, 128, 187, 311, 320, 416
PspPPI	RGGWCCY	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	276, 388
PvuI	CGATCG	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	227, 555
RsaNI	GTAC	2 cut(s)	226, 554
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	3 cut(s)	99, 170, 182
Sau3AI	GATC	5 cut(s)	36, 201, 238, 276, 388
Sau96I	GGNCC	6 cut(s)	52, 128, 187, 311, 320, 416
ScrFI	CCNGG	3 cut(s)	83, 151, 315
SduI	GDGCHC	2 cut(s)	219, 361
SfaNI	GCATC	4 cut(s)	156, 337, 532, 598
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	4 cut(s)	187, 311, 320, 416
SmlI	CTYRAG	2 cut(s)	218, 428
SmoI	CTYRAG	2 cut(s)	218, 428
SpeI	ACTAGT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	99, 182, 207
SspMI	CTAG	2 cut(s)	351, 525
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	81, 149, 313
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	378
TauI	GCSGC	2 cut(s)	101, 184
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	30, 400
TseI	GCWGC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	30, 400
VpaK11BI	GGWCC	4 cut(s)	187, 311, 320, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	2 cut(s)	351, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.