Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010724

Physical Location & Seq

Genomic Coordinates Reverse (-)

28558095 .. 28560191

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTCTGCAACTGTGGGAAACACTGAAAGAGGCAATCGTAGCATACACAGGGCTCTCTCCTGCGACCTTCTTCACACTGTTAGCTCTGCTGGTTGCCATATACCATGTCATCTCGGGCCTCTTTGGGTCGTCTGATAACCATCAGACCCCCAGGAACATGGAGGAGATGCAGCCTCTGGCTCCTCCTGTCCAGTTGGGCGAGATCACTGAAGACGAGTTGAAGCAATACGACGGCACCGATTCCAAGAAGCCTTTGCTCATGGCTATCAAGGGTCAGATCTATGACGTGTCTCAAAGCAGGATGTTTTATGGACCTGGTGGGCCTTACGCACTGTTCGCAGGAAAAGATGCTAGCAGAGCTCTTGCAAAAATGTCTTTTGAAGACAAAGATCTGACTGGTGATATCTCTGGTCTTGGTCCATTTGAACTAGATGCCTTACAGGATTGGGAATACAAGTTCATGAGCAAGTATGTCACAGTTGGAACTATTAAGAAGGCAGAAACTGATGGAGAAGCCACTGGTGAAACCACTAAAGCTGCTGAAGATATTCCATCTGAAAGCTCAGCTGTTAAATCTGAGGAAACCTCAACTAGTGCTGAAGCTAAGCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

206

Amino Acids

22.34

Weight (kDa)

4.55

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52240 AT5G52240
fragaria_vesca	FvH4_7g29310
malus_domestica	MD01G1199500.v1.1 MD06G1084900.v1.1 MD07G1267300.v1.1 MD13G1074400.v1.1 MD17G1239500.v1.1
prunus_persica	Prupe.2G293000_v2.0.a1
pyrus_communis	pycom01g20940
rosa_chinensis	RchiOBHm_Chr1g0377051
rosa_laevigata	RLG00000026547
rosa_multiflora	Rmu_ssc0000155.1_g000020
rosa_roxburghii	Rroxscaffold_4G00281470
rosa_rugosa	Rorug01G0401300
rosa_samantha	Rh1AG418400 Rh1BG377500 Rh1CG391500 Rh1DG408200
rosa_wichuraiana	Rw1G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	231, 564
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	223, 383, 428
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	152, 316
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	6 cut(s)	86, 362, 539, 564, 569, 605
AluI	AGCT	6 cut(s)	86, 362, 539, 564, 569, 605
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	297
AlwNI	CAGNNNCTG	2 cut(s)	178, 506
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	118, 323
ApeKI	GCWGC	2 cut(s)	172, 539
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	4 cut(s)	118, 314, 323, 419
AsuHPI	GGTGA	2 cut(s)	413, 536
AsuNHI	GCTAGC	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	314, 419
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	57, 364
BbsI	GAAGAC	2 cut(s)	219, 390
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	184, 526
BccI	CCATC	3 cut(s)	150, 503, 562
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	154, 318
BcoDI	GTCTC	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	3 cut(s)	354, 431, 594
BglII	AGATCT	2 cut(s)	279, 391
BisI	GCNGC	2 cut(s)	173, 540
BlpI	GCTNAGC	2 cut(s)	565, 606
BlsI	GCNGC	2 cut(s)	174, 541
Bme1390I	CCNGG	2 cut(s)	154, 318
Bme18I	GGWCC	2 cut(s)	314, 419
BmeT110I	CYCGRG	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	118, 314, 323, 419
BmiI	GGNNCC	2 cut(s)	183, 238
BmrFI	CCNGG	2 cut(s)	154, 318
BmsI	GCATC	3 cut(s)	159, 340, 424
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	219, 390
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu1102I	GCTNAGC	2 cut(s)	565, 606
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	3 cut(s)	193, 403, 526
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	154, 318
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	309
BseJI	GATNNNNATC	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	570, 579
BseNI	ACTGG	3 cut(s)	193, 403, 526
BseRI	GAGGAG	2 cut(s)	174, 179
BseXI	GCAGC	2 cut(s)	184, 526
BshFI	GGCC	2 cut(s)	120, 325
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	120, 325
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	57, 364
Bsp143I	GATC	3 cut(s)	204, 279, 391
Bsp1720I	GCTNAGC	2 cut(s)	565, 606
BspANI	GGCC	2 cut(s)	120, 325
BspCNI	CTCAG	2 cut(s)	571, 578
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	183, 238
BspOI	GCTAGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	193, 403, 526
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	204, 279, 391
Bst2UI	CCWGG	2 cut(s)	154, 318
Bst4CI	ACNGT	4 cut(s)	15, 81, 336, 481
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	565, 579, 606
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	207, 282, 394
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	204, 279, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 338, 359
BstNI	CCWGG	2 cut(s)	154, 318
BstSCI	CCNGG	2 cut(s)	152, 316
BstV1I	GCAGC	2 cut(s)	184, 526
BstV2I	GAAGAC	2 cut(s)	219, 390
BstX2I	RGATCY	2 cut(s)	279, 391
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	2 cut(s)	279, 391
BsuRI	GGCC	2 cut(s)	120, 325
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	5 cut(s)	23, 77, 207, 332, 519
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	2 cut(s)	178, 506
CciI	TCATGA	1 cut(s)	462
Cfr13I	GGNCC	4 cut(s)	118, 314, 323, 419
CsiI	ACCWGGT	1 cut(s)	316
CviAII	CATG	4 cut(s)	107, 160, 262, 463
DdeI	CTNAG	3 cut(s)	565, 579, 606
DpnI	GATC	3 cut(s)	206, 281, 393
DpnII	GATC	3 cut(s)	204, 279, 391
Ecl136II	GAGCTC	1 cut(s)	362
Eco24I	GRGCYC	2 cut(s)	57, 364
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	314, 419
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	231, 564
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	152, 316
EcoRV	GATATC	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	57, 364
FaeI	CATG	4 cut(s)	110, 163, 265, 466
FatI	CATG	4 cut(s)	106, 159, 261, 462
Fnu4HI	GCNGC	2 cut(s)	173, 540
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	2 cut(s)	57, 364
Fsp4HI	GCNGC	2 cut(s)	173, 540
FspBI	CTAG	3 cut(s)	354, 431, 594
GluI	GCNGC	2 cut(s)	173, 540
HaeIII	GGCC	2 cut(s)	120, 325
Hin1II	CATG	4 cut(s)	110, 163, 265, 466
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	2 cut(s)	413, 536
Hpy188I	TCNGA	6 cut(s)	136, 147, 279, 396, 559, 580
Hpy188III	TCNNGA	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	79, 490
HpyCH4III	ACNGT	4 cut(s)	15, 81, 336, 481
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	10, 172, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 338, 359
HpyF3I	CTNAG	3 cut(s)	565, 579, 606
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	110, 163, 265, 466
Kzo9I	GATC	3 cut(s)	204, 279, 391
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	184, 526
LweI	GCATC	3 cut(s)	159, 340, 424
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	3 cut(s)	354, 431, 594
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	3 cut(s)	206, 281, 393
MboI	GATC	3 cut(s)	204, 279, 391
MboII	GAAGA	4 cut(s)	64, 224, 395, 557
MflI	RGATCY	2 cut(s)	279, 391
MhlI	GDGCHC	2 cut(s)	57, 364
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	7 cut(s)	25, 131, 157, 186, 195, 574, 598
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	2 cut(s)	492, 573
MspA1I	CMGCKG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	154, 318
MvaI	CCWGG	2 cut(s)	154, 318
MwoI	GCNNNNNNNGC	3 cut(s)	41, 338, 359
NdeII	GATC	3 cut(s)	204, 279, 391
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	4 cut(s)	110, 163, 265, 466
NlaIV	GGNNCC	2 cut(s)	183, 238
NmuCI	GTSAC	1 cut(s)	475
PagI	TCATGA	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	174, 541
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	152, 316
PspGI	CCWGG	2 cut(s)	152, 316
PspN4I	GGNNCC	2 cut(s)	183, 238
PspPI	GGNCC	4 cut(s)	118, 314, 323, 419
PstNI	CAGNNNCTG	2 cut(s)	178, 506
PsuI	RGATCY	2 cut(s)	279, 391
PvuII	CAGCTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	492, 573
SatI	GCNGC	2 cut(s)	173, 540
Sau3AI	GATC	3 cut(s)	204, 279, 391
Sau96I	GGNCC	4 cut(s)	118, 314, 323, 419
ScrFI	CCNGG	2 cut(s)	154, 318
SduI	GDGCHC	2 cut(s)	57, 364
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	159, 340, 424
SinI	GGWCC	2 cut(s)	314, 419
SpeI	ACTAGT	1 cut(s)	593
SspMI	CTAG	3 cut(s)	354, 431, 594
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	2 cut(s)	152, 316
TaaI	ACNGT	4 cut(s)	15, 81, 336, 481
TaiI	ACGT	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	492, 573
Tru9I	TTAA	2 cut(s)	492, 573
TscAI	CASTG	5 cut(s)	30, 84, 214, 339, 526
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	172, 539
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	5 cut(s)	30, 84, 214, 339, 526
VpaK11BI	GGWCC	2 cut(s)	314, 419
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	3 cut(s)	354, 431, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.