Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001452

Physical Location & Seq

Genomic Coordinates Forward (+)

50948070 .. 50948989

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACGTCATTTCCCGGCAGCAGCCGCAGTCGACTCTGAACCCGAACGCTCCGATGTTCGTTCCGTCGGCGTATCGGACGGTGGAGGACTTCTCCGCCGAGTGGTGGGCCCTGGTCCAGTCCTCCCCTTGGTTCCGCGACTACTGGCTCCAGGAGAACTTCCAGGATCCCCAGAATGACCCCTTCTTTTCCGATATTCCCGACGACTCCGACTACATCGACGACCTCTTCGACGAGGAACACTACCCCACCACCACCACCAACAACAACACACAACAGGTGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAGAAAGACTATCACAAGGAGCTGGTTTCGTTGGGACTGTTGAAGTGGCCGAGGGGTCGAGCTGTGGCGAAGGCCCCGAGGTTTATAGAGAAAGCTCCGAAGATTGTGAATGTCAAAGTGAGTCCCAGGGCGATTCAGCAGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

153

Amino Acids

18.04

Weight (kDa)

4.38

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48880 AT3G48880 AT3G48880
fragaria_vesca	FvH4_7g29321 FvH4_7g29340 FvH4_7g29350 FvH4_7g29350
malus_domestica	MD01G1199600.v1.1 MD06G1077200.v1.1 MD07G1267400.v1.1 MD09G1056800.v1.1 MD14G1098500.v1.1
prunus_persica	Prupe.2G293100_v2.0.a1 Prupe.2G293200_v2.0.a1
pyrus_communis	pycom01g20960 pycom07g24510 pycom111g04760
rosa_chinensis	RchiOBHm_Chr1g0377061 RchiOBHm_Chr1g0377071 RchiOBHm_Chr1g0377081 RchiOBHm_Chr1g0377091 RchiOBHm_Chr1g0377111
rosa_laevigata	RLG00000026542 RLG00000026544 RLG00000026545 RLG00000026546
rosa_multiflora	Rmu_ssc0000155.1_g000019
rosa_roxburghii	Rroxscaffold_4G00281440 Rroxscaffold_4G00281450 Rroxscaffold_4G00281460
rosa_rugosa	Rorug01G0401300 Rorug01G0401300
rosa_samantha	Rh1AG418500 Rh1AG418600 Rh1AG418700 Rh1AG418800 Rh1AG418900 Rh1BG377600 Rh1BG377700 Rh1BG377800 Rh1BG378000 Rh1CG391600 Rh1CG391700 Rh1CG391800 Rh1CG392000 Rh1DG408300 Rh1DG408400 Rh1DG408500 Rh1DG408700
rosa_wichuraiana	Rw1G036720 Rw1G036730 Rw1G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	26, 96, 136
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	4 cut(s)	111, 150, 162, 437
AluBI	AGCT	3 cut(s)	334, 374, 407
AluI	AGCT	3 cut(s)	334, 374, 407
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	108, 359, 384
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	19, 22, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspS9I	GGNCC	4 cut(s)	108, 109, 115, 385
AsuC2I	CCSGG	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	31, 34
BciT130I	CCWGG	4 cut(s)	113, 152, 164, 439
BcnI	CCSGG	1 cut(s)	16
BisI	GCNGC	4 cut(s)	20, 23, 26, 452
BlsI	GCNGC	4 cut(s)	21, 24, 27, 453
Bme1390I	CCNGG	5 cut(s)	16, 113, 152, 164, 439
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	4 cut(s)	108, 109, 115, 385
BmiI	GGNNCC	5 cut(s)	110, 134, 149, 168, 387
BmrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 439
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	7 cut(s)	111, 128, 362, 389, 437, 438, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 105, 129
Bse1I	ACTGG	2 cut(s)	118, 149
BseBI	CCWGG	4 cut(s)	113, 152, 164, 439
BseDI	CCNNGG	7 cut(s)	111, 128, 362, 389, 437, 438, 455
BseLI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BseNI	ACTGG	2 cut(s)	118, 149
BseRI	GAGGAG	3 cut(s)	299, 302, 326
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	31, 34
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	110, 361, 386
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	360, 420
BslI	CCNNNNNNNGG	3 cut(s)	102, 105, 129
BsmFI	GGGAC	2 cut(s)	360, 420
BsnI	GGCC	3 cut(s)	110, 361, 386
BsoBI	CYCGRG	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	3 cut(s)	26, 96, 136
BspANI	GGCC	3 cut(s)	110, 361, 386
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	110, 134, 149, 168, 387
BspPI	GGATC	2 cut(s)	161, 174
BsrI	ACTGG	2 cut(s)	118, 149
BssECI	CCNNGG	7 cut(s)	111, 128, 362, 389, 437, 438, 455
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	4 cut(s)	113, 152, 164, 439
Bst4CI	ACNGT	2 cut(s)	82, 351
Bst6I	CTCTTC	2 cut(s)	233, 303
BstACI	GRCGYC	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	4 cut(s)	113, 152, 164, 439
BstSCI	CCNGG	5 cut(s)	14, 111, 150, 162, 437
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	31, 34
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	110, 361, 386
Cfr13I	GGNCC	4 cut(s)	108, 109, 115, 385
CviJI	RGCY	9 cut(s)	25, 110, 148, 334, 361, 374, 386, 407, 454
CviKI_1	RGCY	9 cut(s)	25, 110, 148, 334, 361, 374, 386, 407, 454
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	233, 303
EarI	CTCTTC	2 cut(s)	233, 303
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	388
EcoO109I	RGGNCCY	2 cut(s)	109, 385
EcoRII	CCWGG	4 cut(s)	111, 150, 162, 437
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	1 cut(s)	398
FaqI	GGGAC	2 cut(s)	360, 420
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	20, 23, 26, 452
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	20, 23, 26, 452
GluI	GCNGC	4 cut(s)	20, 23, 26, 452
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	110, 361, 386
HapII	CCGG	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	34, 206, 433, 445
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	6 cut(s)	39, 54, 78, 193, 211, 411
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	70, 206, 224, 236
HpyAV	CCTTC	2 cut(s)	193, 376
HpyCH4III	ACNGT	2 cut(s)	82, 351
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	4 cut(s)	55, 153, 331, 412
Lsp1109I	GCAGC	2 cut(s)	31, 34
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	8 cut(s)	220, 305, 308, 311, 314, 317, 320, 424
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	112
MlyI	GAGTC	3 cut(s)	28, 200, 442
MmeI	TCCRAC	1 cut(s)	234
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	5 cut(s)	16, 113, 152, 164, 439
MvaI	CCWGG	4 cut(s)	113, 152, 164, 439
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	5 cut(s)	110, 134, 149, 168, 387
NmeAIII	GCCGAG	2 cut(s)	124, 387
PasI	CCCWGGG	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	445
PfoI	TCCNGGA	2 cut(s)	150, 162
PkrI	GCNGC	4 cut(s)	21, 24, 27, 453
PleI	GAGTC	3 cut(s)	28, 200, 441
PpsI	GAGTC	3 cut(s)	28, 200, 441
Psp6I	CCWGG	4 cut(s)	111, 150, 162, 437
PspGI	CCWGG	4 cut(s)	111, 150, 162, 437
PspN4I	GGNNCC	5 cut(s)	110, 134, 149, 168, 387
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	4 cut(s)	108, 109, 115, 385
PsuI	RGATCY	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	31
SatI	GCNGC	4 cut(s)	20, 23, 26, 452
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	4 cut(s)	108, 109, 115, 385
SchI	GAGTC	3 cut(s)	28, 200, 442
ScrFI	CCNGG	5 cut(s)	16, 113, 152, 164, 439
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	8 cut(s)	9, 228, 282, 336, 376, 395, 409, 461
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	3 cut(s)	26, 96, 136
StyD4I	CCNGG	5 cut(s)	14, 111, 150, 162, 437
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	82, 351
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	32, 219, 231, 370
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	19, 22, 451
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.