Rh1AG418900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001452
Physical Location & Seq
Reverse (-)
64983984 .. 64986541
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418900.1

Sequence Viewer

Length: 1005 bp
ATGACTGATAAACCCTCCTCCAGAACCCGAACCGAAAAGCATTGCGATGGAGTAAGGTTGTGCGGGCAAGTTTGGAGATCTGGTGAAATGGAAGACTGTGTCTCTGCTGTGAGGAGATGGGAGGACTTGGAGACGGATATTTTGGTCAAGATTTTTCAGTCGTTTGATGTGTTTGAGTTAACTTCCGGAATAGCTCATGTTTGTAGTGGGTGGCGTTTGGCGTGCTGTGATCCTCTGCTGTGGAAGACGTTGGATTTGTCGATGATGAAATCTAATTTCATCAAAATCCCCTCGGAGCCTTATGTATATGTGGATGACCCGTCCGATAAGCTCTTGTCTCGTTTGTTGAAGATTTCCATGAGTCTCAGCAGGGGAAACATCACGACCTTGATTTTTCATTTCAACTTATATGTGAGCGACGATCAGTTGACTTATACTGCTGAAAGGTGCCCAAAGCTGAAACGACTAGTTTTGCCAGGTTGGAACAGAATAAAAAAGACAGGAATCTGCAAGGCCATTTCCTGCTGGAAGGATCTTGAATCCTTGACAATGCCTAGCATAGCGAATCCCCCATACTTCATAGAAGAGATTGCCAAGAACTGCAGGAACTTCAGAGAACTAAAGATCATGGGTCCTTGTGATATCTTTTTTGCTTCGACCCTAGTTGCATATCTTCCTAAGCTGAAGGTTTTAAGCCTCCGGTGCTCAATGCTCCTAAGGGAGGCTCTCCTCATGATCTTGGAGGGCCTACCACAGCTAGAAGTTCTGAATATTTCGCATTGCCTTCTTTTCGACCTCTCTCCATCGCCTACATCTAAAAAAATTTTGAGAGAGATCGATCCTTTTATCCATGAGAAGGCCTCTCGACTACGCAGGTTTTTGACTTGCAGTCAAGACACCTGCGTGATGTGCCAAAGGACGAAAACCGACGAGGGGATCTTGAGGTGGTACAAGTATGAAGAAGGGCTATGGAAAGAAGACGAGGTGAGCTCCCTTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

334

Amino Acids

38.54

Weight (kDa)

8.27

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 45 - 86 1.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 2 cut(s) 864, 908
AccB1I GGYRCC 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 1 cut(s) 63
AclWI GGATC 4 cut(s) 224, 540, 833, 944
AcsI RAATTY 1 cut(s) 822
AcuI CTGAAG 2 cut(s) 595, 704
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 3 cut(s) 721, 856, 933
AgsI TTSAA 3 cut(s) 349, 403, 539
AhdI GACNNNNNGTC 1 cut(s) 888
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 1 cut(s) 475
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 6 cut(s) 194, 331, 457, 682, 757, 990
AluI AGCT 6 cut(s) 194, 331, 457, 682, 757, 990
Alw21I GWGCWC 2 cut(s) 707, 992
Alw26I GTCTC 4 cut(s) 106, 125, 342, 368
AlwI GGATC 4 cut(s) 224, 540, 833, 944
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 3 cut(s) 513, 745, 858
ApoI RAATTY 1 cut(s) 822
ArsI GACNNNNNNTTYG 4 cut(s) 124, 156, 238, 270
AspS9I GGNCC 2 cut(s) 632, 745
AsuHPI GGTGA 2 cut(s) 95, 997
AvaII GGWCC 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 992
BbsI GAAGAC 3 cut(s) 99, 251, 984
Bbv12I GWGCWC 2 cut(s) 707, 992
BccI CCATC 3 cut(s) 41, 111, 811
BciT130I CCWGG 1 cut(s) 477
BcoDI GTCTC 4 cut(s) 106, 125, 342, 368
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 4 cut(s) 467, 555, 662, 758
BfmI CTRYAG 1 cut(s) 601
BfuAI ACCTGC 2 cut(s) 864, 908
BglII AGATCT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 632
BmeRI GACNNNNNGTC 1 cut(s) 888
BmgT120I GGNCC 2 cut(s) 632, 745
BmiI GGNNCC 3 cut(s) 297, 449, 633
BmrFI CCNGG 1 cut(s) 477
BpiI GAAGAC 3 cut(s) 99, 251, 984
BplI GAGNNNNNCTC 3 cut(s) 845, 877, 974
BpmI CTGGAG 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 961
Bsa29I ATCGAT 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 2 cut(s) 185, 699
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 856, 933
Bse21I CCTNAGG 1 cut(s) 716
Bse3DI GCAATG 2 cut(s) 40, 778
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 1 cut(s) 477
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 721, 856, 933
BseMI GCAATG 2 cut(s) 40, 778
BseMII CTCAG 1 cut(s) 379
BseRI GAGGAG 3 cut(s) 7, 127, 719
BseSI GKGCMC 1 cut(s) 452
BshFI GGCC 3 cut(s) 515, 747, 860
BshNI GGYRCC 1 cut(s) 447
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 2 cut(s) 707, 992
BsiSI CCGG 2 cut(s) 186, 700
BslI CCNNNNNNNGG 3 cut(s) 721, 856, 933
BsmAI GTCTC 4 cut(s) 106, 125, 342, 368
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 515, 747, 860
Bsp1286I GDGCHC 3 cut(s) 452, 707, 992
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
BspACI CCGC 1 cut(s) 63
BspANI GGCC 3 cut(s) 515, 747, 860
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 837
BspEI TCCGGA 1 cut(s) 185
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 3 cut(s) 297, 449, 633
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 2 cut(s) 864, 908
BspPI GGATC 4 cut(s) 224, 540, 833, 944
BspT107I GGYRCC 1 cut(s) 447
BsrDI GCAATG 2 cut(s) 40, 778
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 65, 223
BstDEI CTNAG 3 cut(s) 365, 678, 716
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 9 cut(s) 80, 232, 424, 535, 627, 738, 837, 841, 939
BstMAI GTCTC 4 cut(s) 106, 125, 342, 368
BstMBI GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
BstMWI GCNNNNNNNGC 2 cut(s) 702, 909
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 452
BstV2I GAAGAC 3 cut(s) 99, 251, 984
BstX2I RGATCY 3 cut(s) 77, 532, 936
BstYI RGATCY 3 cut(s) 77, 532, 936
Bsu15I ATCGAT 1 cut(s) 837
Bsu36I CCTNAGG 1 cut(s) 716
BsuRI GGCC 3 cut(s) 515, 747, 860
BsuTUI ATCGAT 1 cut(s) 837
BtgZI GCGATG 2 cut(s) 60, 789
BtsCI GGATG 1 cut(s) 319
BveI ACCTGC 2 cut(s) 864, 908
Cac8I GCNNGC 2 cut(s) 65, 223
CciI TCATGA 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 632, 745
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 1 cut(s) 949
CviAII CATG 5 cut(s) 197, 358, 628, 733, 851
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 3 cut(s) 365, 678, 716
DpnI GATC 9 cut(s) 79, 231, 423, 534, 626, 737, 836, 840, 938
DpnII GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
DriI GACNNNNNGTC 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 579
Eam1105I GACNNNNNGTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 990
Eco147I AGGCCT 1 cut(s) 860
Eco24I GRGCYC 1 cut(s) 992
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 632
Eco53kI GAGCTC 1 cut(s) 990
Eco57I CTGAAG 2 cut(s) 595, 704
Eco81I CCTNAGG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 990
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoO109I RGGNCCY 2 cut(s) 632, 745
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 992
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 5 cut(s) 200, 361, 631, 736, 854
FatI CATG 5 cut(s) 196, 357, 627, 732, 850
FauI CCCGC 1 cut(s) 56
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 992
FspBI CTAG 4 cut(s) 467, 555, 662, 758
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 515, 747, 860
HapII CCGG 2 cut(s) 186, 700
Hin1II CATG 5 cut(s) 200, 361, 631, 736, 854
HincII GTYRAC 2 cut(s) 180, 429
HindII GTYRAC 2 cut(s) 180, 429
HinfI GANTC 4 cut(s) 361, 504, 539, 565
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 2 cut(s) 186, 700
HphI GGTGA 2 cut(s) 95, 997
Hpy166II GTNNAC 2 cut(s) 180, 429
Hpy188I TCNGA 4 cut(s) 295, 325, 614, 768
Hpy188III TCNNGA 9 cut(s) 21, 148, 186, 382, 536, 733, 864, 893, 940
Hpy8I GTNNAC 2 cut(s) 180, 429
Hpy99I CGWCG 2 cut(s) 422, 932
HpyAV CCTTC 5 cut(s) 523, 679, 794, 850, 956
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 510, 603, 668, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 702, 909
HpyF3I CTNAG 3 cut(s) 365, 678, 716
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 5 cut(s) 200, 361, 631, 736, 854
Kpn2I TCCGGA 1 cut(s) 185
KspAI GTTAAC 1 cut(s) 180
Kzo9I GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
LmnI GCTCC 3 cut(s) 295, 717, 995
MaeI CTAG 4 cut(s) 467, 555, 662, 758
MaeII ACGT 1 cut(s) 248
MalI GATC 9 cut(s) 79, 231, 423, 534, 626, 737, 836, 840, 938
MboI GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
MboII GAAGA 7 cut(s) 104, 256, 361, 596, 665, 971, 989
MflI RGATCY 3 cut(s) 77, 532, 936
MhlI GDGCHC 3 cut(s) 452, 707, 992
MluCI AATT 2 cut(s) 274, 822
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 2 cut(s) 231, 461
MroI TCCGGA 1 cut(s) 185
MseI TTAA 2 cut(s) 179, 692
MslI CAYNNNNRTG 2 cut(s) 45, 902
MspI CCGG 2 cut(s) 186, 700
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 702, 909
NdeII GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
NlaIII CATG 5 cut(s) 200, 361, 631, 736, 854
NlaIV GGNNCC 3 cut(s) 297, 449, 633
OliI CACNNNNGTG 1 cut(s) 902
PagI TCATGA 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 908
PceI AGGCCT 1 cut(s) 860
PfeI GAWTC 3 cut(s) 504, 539, 565
PflFI GACNNNGTC 1 cut(s) 98
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PpuMI RGGWCCY 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 992
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 3 cut(s) 297, 449, 633
PspPI GGNCC 2 cut(s) 632, 745
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 3 cut(s) 77, 532, 936
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 2 cut(s) 45, 902
SacI GAGCTC 1 cut(s) 992
SaqAI TTAA 2 cut(s) 179, 692
Sau3AI GATC 9 cut(s) 77, 229, 421, 532, 624, 735, 834, 838, 936
Sau96I GGNCC 2 cut(s) 632, 745
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 3 cut(s) 452, 707, 992
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 2 cut(s) 45, 902
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 2 cut(s) 274, 822
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 1 cut(s) 63
SspI AATATT 1 cut(s) 772
SspMI CTAG 4 cut(s) 467, 555, 662, 758
SstI GAGCTC 1 cut(s) 992
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 260, 656, 792, 837, 865
TasI AATT 2 cut(s) 274, 822
TfiI GAWTC 3 cut(s) 504, 539, 565
Tru1I TTAA 2 cut(s) 179, 692
Tru9I TTAA 2 cut(s) 179, 692
TspDTI ATGAA 5 cut(s) 268, 281, 386, 568, 972
TspGWI ACGGA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 632
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 822
XspI CTAG 4 cut(s) 467, 555, 662, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.