FvH4_7g29340

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001452
Physical Location & Seq
Reverse (-)
21610374 .. 21612236
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29340.t1

Sequence Viewer

Length: 951 bp
ATGGAAGAGGGTGATTCCCTTCTCACCTTAAGAAGATGGGATGATCTCAACTCCGACATACTACGTAAGATTTTCGGTTCTTTCGACTACATCAGTGATGCAACCTCAGCTATTGCTCAGGTTCGTTGCAGCGCCGTTTGTATTGCTTGGCGTTCGATTCTATGTGATCCTCAGCTCTGGGATGTTCTAGATTTGTCTTGGTTGAAATCCAACTTCATCAAGATCCATCAGGAGCCTTACGTCTATGTGGATAGCCGGTCCGACGAGACATTGAGCCGGGTTTTGAAGGTCTCGTTGAGTCTTAGCAGAGGTAACATTACCACTTTGGTTTTAAACCCCGAGTTGTATATCAGTGACGACCAGCTGACGTTCACTGCTGAAAGGTGCCCGAATCTAAAACGACTAGTGATGCCAACCGGGGACAGAATAAAGAAGACTGGAATCTGCCAGGCAATTCGGAATTGGCAAGAACTCGAATCGCTGACAGTGCCGGGCATAATGTATCCCCCGTACCTAATGGAGGTGATCTCCAATCACTGCAGTAACTTCAGGGAGCTAAAGATCATGGGTCGTTTCGACGTCAGATTCGCTTCAACATTAGTTGGTACTTATCTTCCTAATCTCAAGGTCATGAGCCTGCGGTGTTCGCAGCTGGTTAGGGAAGCTTTGATCACTATATTGGACGGGTTACCACAGCTAGAAGTCCTCAATATAGCACATTGTGTGCTTCTGATTGAACCCCCGCGGCGTAATCAGCCTCTCCAAATTGTTGAGGAGCTTGATGAAGTTATTCTTGAGAAGGCTTCTCGGTTAGAGAGATTCATAACGTGCACGCAAATAGACCGGTGCATCATGTGCCAAAGGGCCAGAAACGATGGGGGGATTATGAAATGGTATAAATATGAAGAAGGGCTCTGGAAACAAGATGAGGTGAACACTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

317

Amino Acids

36.42

Weight (kDa)

5.6

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 60 9.5e-06 F-box domain
LRR_At5g56370 PF24758 151 - 280 4.7e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 384
AccII CGCG 1 cut(s) 745
AciI CCGC 3 cut(s) 640, 743, 745
AclWI GGATC 2 cut(s) 161, 217
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 2 cut(s) 512, 607
AfiI CCNNNNNNNGG 1 cut(s) 520
AflII CTTAAG 1 cut(s) 28
AgeI ACCGGT 1 cut(s) 843
AgsI TTSAA 4 cut(s) 205, 286, 594, 737
AhlI ACTAGT 1 cut(s) 403
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 8 cut(s) 110, 175, 364, 556, 652, 665, 697, 778
AluI AGCT 8 cut(s) 110, 175, 364, 556, 652, 665, 697, 778
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 2 cut(s) 260, 295
Alw44I GTGCAC 1 cut(s) 829
AlwI GGATC 2 cut(s) 161, 217
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 864
ApaLI GTGCAC 1 cut(s) 829
ApeKI GCWGC 2 cut(s) 129, 649
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsiGI ACCGGT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 258, 864
AsuC2I CCSGG 3 cut(s) 278, 418, 492
AsuHPI GGTGA 4 cut(s) 16, 23, 535, 943
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 2 cut(s) 389, 833
BanI GGYRCC 1 cut(s) 384
BanII GRGCYC 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 833
BbvCI CCTCAGC 2 cut(s) 106, 171
BbvI GCAGC 2 cut(s) 141, 661
BccI CCATC 3 cut(s) 30, 234, 869
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 449
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 3 cut(s) 278, 418, 492
BcoDI GTCTC 2 cut(s) 260, 295
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 3 cut(s) 188, 404, 698
BfmI CTRYAG 1 cut(s) 538
BfoI RGCGCY 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 28
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 3 cut(s) 130, 650, 746
BlsI GCNGC 3 cut(s) 131, 651, 747
Bme1390I CCNGG 4 cut(s) 278, 418, 449, 492
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 258, 864
BmiI GGNNCC 2 cut(s) 234, 386
BmrFI CCNGG 4 cut(s) 278, 418, 449, 492
BmsI GCATC 3 cut(s) 88, 399, 858
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu10I CCTNAGC 3 cut(s) 106, 117, 171
BpuEI CTTGAG 2 cut(s) 608, 815
BpuMI CCSGG 3 cut(s) 278, 418, 492
BsaAI YACGTR 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 417, 743
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse118I RCCGGY 2 cut(s) 255, 843
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 417, 743
BseGI GGATG 2 cut(s) 46, 187
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 120, 131, 185
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 2 cut(s) 389, 833
BseXI GCAGC 2 cut(s) 141, 661
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 1 cut(s) 866
BshNI GGYRCC 1 cut(s) 384
BshTI ACCGGT 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 5 cut(s) 256, 277, 417, 491, 844
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 260, 295
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 1 cut(s) 866
Bso31I GGTCTC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 389, 833, 915
Bsp143I GATC 6 cut(s) 43, 166, 222, 525, 561, 669
BspACI CCGC 3 cut(s) 640, 743, 745
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 3 cut(s) 119, 130, 184
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 2 cut(s) 234, 386
BspMAI CTGCAG 1 cut(s) 542
BspPI GGATC 2 cut(s) 161, 217
BspT107I GGYRCC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 255, 843
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 2 cut(s) 255, 843
BssECI CCNNGG 2 cut(s) 417, 743
BssMI GATC 6 cut(s) 43, 166, 222, 525, 561, 669
BssNI GRCGYC 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 579
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 855
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 638, 833
BstDEI CTNAG 4 cut(s) 106, 117, 171, 302
BstDSI CCRYGG 1 cut(s) 743
BstEII GGTNACC 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 2 cut(s) 46, 187
BstFNI CGCG 1 cut(s) 745
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 6 cut(s) 46, 169, 225, 528, 564, 672
BstMAI GTCTC 2 cut(s) 260, 295
BstMBI GATC 6 cut(s) 43, 166, 222, 525, 561, 669
BstMWI GCNNNNNNNGC 5 cut(s) 107, 487, 646, 754, 855
BstNI CCWGG 1 cut(s) 449
BstPI GGTNACC 1 cut(s) 687
BstSCI CCNGG 4 cut(s) 276, 416, 447, 490
BstSFI CTRYAG 1 cut(s) 538
BstSLI GKGCMC 2 cut(s) 389, 833
BstSNI TACGTA 1 cut(s) 65
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 141, 661
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 2 cut(s) 46, 187
BtsI GCAGTG 2 cut(s) 372, 535
BtsIMutI CAGTG 5 cut(s) 100, 358, 372, 492, 535
Cac8I GCNNGC 2 cut(s) 638, 833
CciI TCATGA 1 cut(s) 630
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 255, 843
Cfr13I GGNCC 2 cut(s) 258, 864
Cfr42I CCGCGG 1 cut(s) 746
CpoI CGGWCCG 1 cut(s) 258
Csp6I GTAC 2 cut(s) 511, 606
CspAI ACCGGT 1 cut(s) 843
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 3 cut(s) 565, 631, 853
CviQI GTAC 2 cut(s) 511, 606
DdeI CTNAG 4 cut(s) 106, 117, 171, 302
DpnI GATC 6 cut(s) 45, 168, 224, 527, 563, 671
DpnII GATC 6 cut(s) 43, 166, 222, 525, 561, 669
DraI TTTAAA 1 cut(s) 333
DraIII CACNNNGTG 1 cut(s) 722
Eco105I TACGTA 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 915
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 687
EcoRII CCWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 915
FaeI CATG 3 cut(s) 568, 634, 856
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 1 cut(s) 434
FatI CATG 3 cut(s) 564, 630, 852
FauI CCCGC 1 cut(s) 750
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 3 cut(s) 130, 650, 746
FokI GGATG 2 cut(s) 53, 194
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 3 cut(s) 130, 650, 746
FspBI CTAG 3 cut(s) 188, 404, 698
GlaI GCGC 1 cut(s) 133
GluI GCNGC 3 cut(s) 130, 650, 746
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 866
HapII CCGG 5 cut(s) 256, 277, 417, 491, 844
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 3 cut(s) 568, 634, 856
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 8 cut(s) 14, 157, 298, 391, 441, 476, 585, 819
HpaII CCGG 5 cut(s) 256, 277, 417, 491, 844
HphI GGTGA 4 cut(s) 16, 23, 535, 943
Hpy166II GTNNAC 3 cut(s) 372, 831, 934
Hpy188I TCNGA 5 cut(s) 55, 262, 459, 584, 732
Hpy188III TCNNGA 6 cut(s) 188, 220, 230, 631, 794, 916
Hpy8I GTNNAC 3 cut(s) 372, 831, 934
Hpy99I CGWCG 2 cut(s) 266, 581
HpyAV CCTTC 4 cut(s) 29, 280, 793, 902
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 5 cut(s) 64, 240, 368, 579, 827
HpyCH4V TGCA 5 cut(s) 101, 129, 540, 831, 849
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 487, 646, 754, 855
HpyF3I CTNAG 4 cut(s) 106, 117, 171, 302
HpySE526I ACGT 5 cut(s) 64, 240, 368, 579, 827
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 3 cut(s) 568, 634, 856
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 746
Kzo9I GATC 6 cut(s) 43, 166, 222, 525, 561, 669
LmnI GCTCC 3 cut(s) 232, 553, 775
Lsp1109I GCAGC 2 cut(s) 141, 661
LweI GCATC 3 cut(s) 88, 399, 858
MaeI CTAG 3 cut(s) 188, 404, 698
MaeII ACGT 5 cut(s) 64, 240, 368, 579, 827
MaeIII GTNAC 4 cut(s) 311, 353, 542, 687
MalI GATC 6 cut(s) 45, 168, 224, 527, 563, 671
MboI GATC 6 cut(s) 43, 166, 222, 525, 561, 669
MboII GAAGA 5 cut(s) 17, 45, 445, 605, 917
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 389, 833, 915
MluCI AATT 3 cut(s) 453, 460, 765
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 3 cut(s) 78, 234, 285
MnlI CCTC 8 cut(s) 115, 180, 302, 514, 716, 766, 768, 922
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 2 cut(s) 29, 332
MspA1I CMGCKG 3 cut(s) 364, 652, 745
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 5 cut(s) 256, 277, 417, 491, 844
MspR9I CCNGG 4 cut(s) 278, 418, 449, 492
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 5 cut(s) 107, 487, 646, 754, 855
NciI CCSGG 3 cut(s) 278, 418, 492
NdeII GATC 6 cut(s) 43, 166, 222, 525, 561, 669
NlaIII CATG 3 cut(s) 568, 634, 856
NlaIV GGNNCC 2 cut(s) 234, 386
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 7 cut(s) 14, 157, 391, 441, 476, 585, 819
PinAI ACCGGT 1 cut(s) 843
PkrI GCNGC 3 cut(s) 131, 651, 747
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 687
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 234, 386
PspPI GGNCC 2 cut(s) 258, 864
PstI CTGCAG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 222
PvuII CAGCTG 2 cut(s) 364, 652
RsaI GTAC 2 cut(s) 512, 607
RsaNI GTAC 2 cut(s) 511, 606
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SacII CCGCGG 1 cut(s) 746
SaqAI TTAA 2 cut(s) 29, 332
SatI GCNGC 3 cut(s) 130, 650, 746
Sau3AI GATC 6 cut(s) 43, 166, 222, 525, 561, 669
Sau96I GGNCC 2 cut(s) 258, 864
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 278, 418, 449, 492
SduI GDGCHC 3 cut(s) 389, 833, 915
SfaNI GCATC 3 cut(s) 88, 399, 858
SfcI CTRYAG 1 cut(s) 538
Sfr303I CCGCGG 1 cut(s) 746
SgrBI CCGCGG 1 cut(s) 746
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 28, 623, 794
SmoI CTYRAG 3 cut(s) 28, 623, 794
SnaBI TACGTA 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 403
Sse9I AATT 3 cut(s) 453, 460, 765
SsiI CCGC 3 cut(s) 640, 743, 745
SspMI CTAG 3 cut(s) 188, 404, 698
StyD4I CCNGG 4 cut(s) 276, 416, 447, 490
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 5 cut(s) 67, 243, 371, 582, 830
TaqI TCGA 4 cut(s) 84, 155, 474, 576
TasI AATT 3 cut(s) 453, 460, 765
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 7 cut(s) 14, 157, 391, 441, 476, 585, 819
Tru1I TTAA 2 cut(s) 29, 332
Tru9I TTAA 2 cut(s) 29, 332
TscAI CASTG 5 cut(s) 100, 358, 379, 492, 542
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 129, 649
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 205, 798, 811, 902, 918
TspRI CASTG 5 cut(s) 100, 358, 379, 492, 542
Vha464I CTTAAG 1 cut(s) 28
VneI GTGCAC 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 3 cut(s) 188, 404, 698
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.