Rh1AG418500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001452
Physical Location & Seq
Reverse (-)
64976814 .. 64977743
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG418500.1

Sequence Viewer

Length: 930 bp
ATGGAAGAGTACGACTCCAGACGAGGGGATGACCTGCCTAGTGACGTACTGCGCAATTTATTTGAGTTTTTCGACGACACATCGGATCCAACTTCGGCCATTACCAGGGTTCATTGCAGTGCCGTTTGTAGTGCTTGGCGTTCGATTCTCTGTGACCCTCAGCTTTGGAACACAATTGACCTCTCCACCATGGAATCTGATTTCATCAGAATACAAATTGAGCCCTATGTTTGGGTTAGTGAAAAGACAGATTCGAGATTGAATTGCATTTTGAAGACTGCATTGAGTCTCAGCAGGAGAAATATAACCACCCTTCTCTTCAATCTCAACCTGTATGTTCCTGACCATCTCTTCACTTACACTGCTGAAAGATCCCCGAAGCTGAAACGACTGGTTATGCCGGTATGGAACAGGATAAGCATTGCCGGAATCCGCAAGGCCATTGCTTCATGGAAAGACCTTGAGTCCCTTACAATAGGTAACATCAATAGTTACAACTACGACTTCCTCATGAGACAGATTTCAACCAATTGCAAGAACTTCAGTGAGTTGAAGTTGGTCGGAACTTGGGGTTTCTTTGCTTCAGCACTAGTTAGATATGTTCCGAAACTGAAAGTTTTAAGCCTCCGGTGTTCGAATCTCTTGAAGGAGGATTTGATCGCCATATTAAATGGATTACAAGACTTGGAAGTTCTGAATATATCACATTGCGTTTTGCTAAATACTCGACCTAGAACGAGGATTACTCTTACAGAGCTTGATCCATTTATTCTTGGCAAGGCTTTTAGGTTAAGGAGATTCATAACGTGCATGAAATCTGAGTCGTGCGTCATGTGCCAAAGGGCCAGAAAAGACGAGGGGATCATGAGGTGGTATAGGTATGAAGAAGGGTTATGGAAAGTAGATGAGGTCGACTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

309

Amino Acids

35.88

Weight (kDa)

8.48

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 61 3.1e-09 F-box-like
F-box PF00646 11 - 57 1.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 912
AciI CCGC 1 cut(s) 433
AclWI GGATC 5 cut(s) 80, 93, 366, 755, 869
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 526, 567
AfaI GTAC 2 cut(s) 11, 48
AfiI CCNNNNNNNGG 3 cut(s) 24, 105, 231
AgsI TTSAA 6 cut(s) 262, 274, 322, 525, 553, 646
AhdI GACNNNNNGTC 1 cut(s) 463
AhlI ACTAGT 1 cut(s) 589
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 3 cut(s) 163, 382, 757
AluI AGCT 3 cut(s) 163, 382, 757
Alw26I GTCTC 2 cut(s) 293, 508
AlwI GGATC 5 cut(s) 80, 93, 366, 755, 869
AoxI GGCC 3 cut(s) 96, 438, 843
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 843
AsuII TTCGAA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 1 cut(s) 902
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 293, 508
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 3 cut(s) 39, 590, 732
BfuAI ACCTGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 843
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 281
BplI GAGNNNNNCTC 4 cut(s) 31, 730, 762, 899
Bpu10I CCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 105, 189
BsaWI WCCGGW 1 cut(s) 627
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 105, 231
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 4 cut(s) 112, 420, 441, 706
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 105, 189
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 24, 105, 231
BseMI GCAATG 4 cut(s) 112, 420, 441, 706
BseMII CTCAG 3 cut(s) 173, 304, 810
BseNI ACTGG 1 cut(s) 396
BshFI GGCC 3 cut(s) 98, 440, 845
BsiSI CCGG 3 cut(s) 401, 426, 628
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 3 cut(s) 24, 105, 231
BsmAI GTCTC 2 cut(s) 293, 508
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 3 cut(s) 98, 440, 845
Bsp119I TTCGAA 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 5 cut(s) 85, 371, 657, 760, 861
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 433
BspANI GGCC 3 cut(s) 98, 440, 845
BspCNI CTCAG 3 cut(s) 172, 303, 811
BspHI TCATGA 2 cut(s) 510, 864
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 5 cut(s) 80, 93, 366, 755, 869
BspT104I TTCGAA 1 cut(s) 635
BsrDI GCAATG 4 cut(s) 112, 420, 441, 706
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 105, 189
BssMI GATC 5 cut(s) 85, 371, 657, 760, 861
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 323, 356
BstBI TTCGAA 1 cut(s) 635
BstDEI CTNAG 3 cut(s) 159, 290, 819
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 88, 374, 660, 763, 864
BstMAI GTCTC 2 cut(s) 293, 508
BstMBI GATC 5 cut(s) 85, 371, 657, 760, 861
BstMWI GCNNNNNNNGC 1 cut(s) 834
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 2 cut(s) 85, 371
BstYI RGATCY 2 cut(s) 85, 371
BsuRI GGCC 3 cut(s) 98, 440, 845
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 2 cut(s) 124, 360
BtsIMutI CAGTG 3 cut(s) 124, 360, 550
BveI ACCTGC 1 cut(s) 42
CciI TCATGA 2 cut(s) 510, 864
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 843
CseI GACGC 1 cut(s) 817
Csp6I GTAC 2 cut(s) 10, 47
CviAII CATG 6 cut(s) 190, 450, 511, 811, 832, 865
CviJI RGCY 9 cut(s) 98, 163, 223, 382, 440, 624, 757, 782, 845
CviKI_1 RGCY 9 cut(s) 98, 163, 223, 382, 440, 624, 757, 782, 845
CviQI GTAC 2 cut(s) 10, 47
DdeI CTNAG 3 cut(s) 159, 290, 819
DpnI GATC 5 cut(s) 87, 373, 659, 762, 863
DpnII GATC 5 cut(s) 85, 371, 657, 760, 861
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 323, 356
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 2 cut(s) 323, 356
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 526, 567
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 193, 453, 514, 814, 835, 868
FaqI GGGAC 1 cut(s) 451
FatI CATG 6 cut(s) 189, 449, 510, 810, 831, 864
FblI GTMKAC 1 cut(s) 912
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 3 cut(s) 39, 590, 732
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
HaeIII GGCC 3 cut(s) 98, 440, 845
HapII CCGG 3 cut(s) 401, 426, 628
HgaI GACGC 1 cut(s) 817
HhaI GCGC 1 cut(s) 54
Hin1II CATG 6 cut(s) 193, 453, 514, 814, 835, 868
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HpaII CCGG 3 cut(s) 401, 426, 628
Hpy166II GTNNAC 1 cut(s) 913
Hpy188I TCNGA 7 cut(s) 85, 199, 209, 563, 606, 696, 820
Hpy188III TCNNGA 6 cut(s) 18, 255, 341, 511, 643, 865
Hpy8I GTNNAC 1 cut(s) 913
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 323, 640, 881
HpyCH4IV ACGT 2 cut(s) 45, 806
HpyCH4V TGCA 5 cut(s) 117, 267, 281, 534, 810
HpyF10VI GCNNNNNNNGC 1 cut(s) 834
HpyF3I CTNAG 3 cut(s) 159, 290, 819
HpySE526I ACGT 2 cut(s) 45, 806
Hsp92II CATG 6 cut(s) 193, 453, 514, 814, 835, 868
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 85, 371, 657, 760, 861
MaeI CTAG 3 cut(s) 39, 590, 732
MaeII ACGT 2 cut(s) 45, 806
MaeIII GTNAC 4 cut(s) 41, 152, 479, 491
MalI GATC 5 cut(s) 87, 373, 659, 762, 863
MboI GATC 5 cut(s) 85, 371, 657, 760, 861
MboII GAAGA 5 cut(s) 17, 286, 310, 343, 896
MfeI CAATTG 2 cut(s) 174, 529
MflI RGATCY 2 cut(s) 85, 371
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 55, 174, 216, 262, 529
MlyI GAGTC 5 cut(s) 8, 295, 473, 830, 908
MmeI TCCRAC 2 cut(s) 113, 541
MseI TTAA 3 cut(s) 620, 668, 791
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 3 cut(s) 401, 426, 628
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 2 cut(s) 174, 529
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 834
NcoI CCATGG 1 cut(s) 189
NdeII GATC 5 cut(s) 85, 371, 657, 760, 861
NlaIII CATG 6 cut(s) 193, 453, 514, 814, 835, 868
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 41, 152
NsbI TGCGCA 1 cut(s) 53
NspV TTCGAA 1 cut(s) 635
PagI TCATGA 2 cut(s) 510, 864
PfeI GAWTC 6 cut(s) 145, 194, 251, 429, 637, 798
PleI GAGTC 5 cut(s) 8, 294, 472, 829, 908
PpsI GAGTC 5 cut(s) 8, 294, 472, 829, 908
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 843
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PsuI RGATCY 2 cut(s) 85, 371
RsaI GTAC 2 cut(s) 11, 48
RsaNI GTAC 2 cut(s) 10, 47
RseI CAYNNNNRTG 1 cut(s) 117
SalI GTCGAC 1 cut(s) 911
SaqAI TTAA 3 cut(s) 620, 668, 791
Sau3AI GATC 5 cut(s) 85, 371, 657, 760, 861
Sau96I GGNCC 1 cut(s) 843
SchI GAGTC 5 cut(s) 8, 295, 473, 830, 908
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SpeI ACTAGT 1 cut(s) 589
Sse9I AATT 5 cut(s) 55, 174, 216, 262, 529
SsiI CCGC 1 cut(s) 433
SspMI CTAG 3 cut(s) 39, 590, 732
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 2 cut(s) 48, 809
TaqI TCGA 6 cut(s) 72, 143, 254, 635, 727, 912
TasI AATT 5 cut(s) 55, 174, 216, 262, 529
TfiI GAWTC 6 cut(s) 145, 194, 251, 429, 637, 798
Tru1I TTAA 3 cut(s) 620, 668, 791
Tru9I TTAA 3 cut(s) 620, 668, 791
TscAI CASTG 3 cut(s) 124, 367, 550
TseFI GTSAC 2 cut(s) 41, 152
Tsp45I GTSAC 2 cut(s) 41, 152
TspDTI ATGAA 6 cut(s) 101, 193, 438, 790, 827, 897
TspRI CASTG 3 cut(s) 124, 367, 550
XmiI GTMKAC 1 cut(s) 912
XspI CTAG 3 cut(s) 39, 590, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.