Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001452

Physical Location & Seq

Genomic Coordinates Reverse (-)

3753658 .. 3753957

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1056800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGGAAGGAGGCTTTACTCATTCTATTGGATGGCTTACGCCACCTGCAGGTTCTCAATATATCACATTGCCTTGTAATTGAAATATCTCCACCTTCTTACTACGATGAAATTCTTGACAAACTTGATCCGGTTATTCTTAACATGTCTGCTCGGCTGCAAAGATTTACAACCTGCATGCAATTAGATCATTGCATCATGTGCCAAAGGATTAGGGTCGATCTGCTGGGGATTATCAAGTGGTATAAATATGAGGAAGGGCTTTGGAAACAAGATGAGGTCAACTCCCTTTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

100

Amino Acids

11.67

Weight (kDa)

5.85

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48880 AT3G48880 AT3G48880
fragaria_vesca	FvH4_7g29321 FvH4_7g29340 FvH4_7g29350 FvH4_7g29350
malus_domestica	MD01G1199600.v1.1 MD06G1077200.v1.1 MD07G1267400.v1.1 MD09G1056800.v1.1 MD14G1098500.v1.1
prunus_persica	Prupe.2G293100_v2.0.a1 Prupe.2G293200_v2.0.a1
pyrus_communis	pycom01g20960 pycom07g24510 pycom111g04760
rosa_chinensis	RchiOBHm_Chr1g0377061 RchiOBHm_Chr1g0377071 RchiOBHm_Chr1g0377081 RchiOBHm_Chr1g0377091 RchiOBHm_Chr1g0377111
rosa_laevigata	RLG00000026542 RLG00000026544 RLG00000026545 RLG00000026546
rosa_multiflora	Rmu_ssc0000155.1_g000019
rosa_roxburghii	Rroxscaffold_4G00281440 Rroxscaffold_4G00281450 Rroxscaffold_4G00281460
rosa_rugosa	Rorug01G0401300 Rorug01G0401300
rosa_samantha	Rh1AG418500 Rh1AG418600 Rh1AG418700 Rh1AG418800 Rh1AG418900 Rh1BG377600 Rh1BG377700 Rh1BG377800 Rh1BG378000 Rh1CG391600 Rh1CG391700 Rh1CG391800 Rh1CG392000 Rh1DG408300 Rh1DG408400 Rh1DG408500 Rh1DG408700
rosa_wichuraiana	Rw1G036720 Rw1G036730 Rw1G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	3 cut(s)	40, 54, 182
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	83
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	3 cut(s)	40, 54, 182
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	204
BplI	GAGNNNNNCTC	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	67, 190
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	67, 190
BseXI	GCAGC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	127, 187, 220
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	3 cut(s)	40, 54, 182
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	67, 190
BssMI	GATC	3 cut(s)	127, 187, 220
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	3 cut(s)	130, 190, 223
BstMBI	GATC	3 cut(s)	127, 187, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	2 cut(s)	148, 181
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	37
BveI	ACCTGC	3 cut(s)	40, 54, 182
Cac8I	GCNNGC	1 cut(s)	179
CviAII	CATG	3 cut(s)	145, 178, 199
CviJI	RGCY	4 cut(s)	14, 36, 157, 262
CviKI_1	RGCY	4 cut(s)	14, 36, 157, 262
DpnI	GATC	3 cut(s)	129, 189, 222
DpnII	GATC	3 cut(s)	127, 187, 220
FaeI	CATG	3 cut(s)	148, 181, 202
FaiI	YATR	6 cut(s)	62, 146, 179, 200, 246, 252
FatI	CATG	3 cut(s)	144, 177, 198
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	230
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	3 cut(s)	148, 181, 202
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	105, 251
HpyCH4V	TGCA	5 cut(s)	49, 160, 177, 181, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	148, 181, 202
Kzo9I	GATC	3 cut(s)	127, 187, 220
LpnPI	CCDG	5 cut(s)	35, 59, 144, 187, 212
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	204
MalI	GATC	3 cut(s)	129, 189, 222
MboI	GATC	3 cut(s)	127, 187, 220
MluCI	AATT	3 cut(s)	78, 111, 182
MnlI	CCTC	3 cut(s)	4, 247, 271
MseI	TTAA	2 cut(s)	141, 298
MspI	CCGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	3 cut(s)	127, 187, 220
NlaIII	CATG	3 cut(s)	148, 181, 202
NmeAIII	GCCGAG	1 cut(s)	133
NspI	RCATGY	2 cut(s)	148, 181
PaeI	GCATGC	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	54
PciI	ACATGT	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	141, 298
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	127, 187, 220
SbfI	CCTGCAGG	1 cut(s)	51
SdaI	CCTGCAGG	1 cut(s)	51
SetI	ASST	5 cut(s)	48, 54, 97, 176, 282
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	181
Sse8387I	CCTGCAGG	1 cut(s)	51
Sse9I	AATT	3 cut(s)	78, 111, 182
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	78, 111, 182
Tru1I	TTAA	2 cut(s)	141, 298
Tru9I	TTAA	2 cut(s)	141, 298
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	2 cut(s)	148, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.