RLG00000026545

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001452
Physical Location & Seq
Forward (+)
3732976 .. 3733821
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026545

Sequence Viewer

Length: 846 bp
ATGGGATCCCATATAACTCTGAGAAGATGGGAAGGCCTGCCTAGTGACATACTGCAGAAGATTCTAGTTGAGTCTGATTTTGATGACACCTCTGGTTTAACTTCTCTCATTTCTCGGCTCCATTGCGGTGCCGTTTGTAATGCATGGCGTTCGATTCTCTCTGACCCCCAGCTTTGGAATACACTTGACTTGTCCACAATGAAATCTGATTTCATCTACATTCCTGTCGAGCCCTATGTTTATGTTTCTGAAAAGTCAGATTCGATATTGAGTTGCTTTCTGAAGAGTGCATTAAGTCTTAGCAAGGGGAACATAACCACCTTGATCTTCCATCCCAACTTGTATCTGCCTAATGATCTCTTCAATTACACTGCTGAAAGGTTCCTGAAGCTGAAACGGCTGGTTATGCCGGCATGGAACAGATTAAATAGGGATGGAATCTGCAAGGCCATTGCTTGTTCGAAAGACCTTGAATCCCTCACAATAGAACACATTGACAACAAAAGCTTCTCATACCTCATCCACCAGATTTCGAACAACTGCAAGAACTTCAGAGAGCTGAGGTTGATGGTAGCTTCTGAATTTCAGATAGCTTCAATACTAGTTGCTCTTCCAAAACGGAAAGTTTTGAGCCTCCGATGCTCGAACGTCCTGCAGGAGCATTTGATCGCTATATTGGATAGTTTACATGATTTGGAAATTCTGAATGTATCACATTGCCTTGTGATGGAAACTTTACCACCTCTACCAGATCGACCACCTAGAAGAAGGGTCCTTACACAAATTGATCCATTAATGCTTGACAAGGCTTCTAGGTTTAGGGTTTATAACTTGCATGCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

282

Amino Acids

32.16

Weight (kDa)

8.39

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 64 4.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 126
AclWI GGATC 2 cut(s) 13, 782
AcsI RAATTY 2 cut(s) 581, 699
AcuI CTGAAG 3 cut(s) 302, 407, 535
AfiI CCNNNNNNNGG 2 cut(s) 174, 727
AgsI TTSAA 3 cut(s) 364, 473, 597
AhlI ACTAGT 1 cut(s) 601
AluBI AGCT 6 cut(s) 172, 391, 507, 559, 575, 593
AluI AGCT 6 cut(s) 172, 391, 507, 559, 575, 593
AlwI GGATC 2 cut(s) 13, 782
AoxI GGCC 2 cut(s) 34, 447
ApoI RAATTY 2 cut(s) 581, 699
AseI ATTAAT 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 772
AsuII TTCGAA 2 cut(s) 461, 533
AvaII GGWCC 1 cut(s) 772
BamHI GGATCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 760, 792
BbvCI CCTCAGC 1 cut(s) 560
BccI CCATC 5 cut(s) 21, 339, 428, 562, 721
BceAI ACGGC 2 cut(s) 116, 413
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 634, 668
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 5 cut(s) 42, 65, 602, 762, 813
BfmI CTRYAG 2 cut(s) 53, 653
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 1 cut(s) 772
BmiI GGNNCC 5 cut(s) 7, 119, 130, 383, 773
BmsI GCATC 1 cut(s) 629
Bpu10I CCTNAGC 1 cut(s) 560
Bpu14I TTCGAA 2 cut(s) 461, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 727
Bse118I RCCGGY 1 cut(s) 409
Bse3DI GCAATG 3 cut(s) 121, 450, 715
BseGI GGATG 3 cut(s) 331, 439, 519
BseLI CCNNNNNNNGG 2 cut(s) 174, 727
BseMI GCAATG 3 cut(s) 121, 450, 715
BseMII CTCAG 2 cut(s) 11, 551
BseYI CCCAGC 1 cut(s) 168
BshFI GGCC 2 cut(s) 36, 449
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 174, 727
BsnI GGCC 2 cut(s) 36, 449
Bsp119I TTCGAA 2 cut(s) 461, 533
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 6 cut(s) 5, 324, 355, 666, 751, 787
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 36, 449
BspCNI CTCAG 2 cut(s) 12, 552
BspLI GGNNCC 5 cut(s) 7, 119, 130, 383, 773
BspMAI CTGCAG 2 cut(s) 57, 657
BspPI GGATC 2 cut(s) 13, 782
BspQI GCTCTTC 1 cut(s) 615
BspT104I TTCGAA 2 cut(s) 461, 533
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 3 cut(s) 121, 450, 715
BsrFI RCCGGY 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 409
BssMI GATC 6 cut(s) 5, 324, 355, 666, 751, 787
Bst6I CTCTTC 3 cut(s) 278, 365, 615
BstBI TTCGAA 2 cut(s) 461, 533
BstC8I GCNNGC 3 cut(s) 38, 411, 837
BstDEI CTNAG 3 cut(s) 20, 299, 560
BstF5I GGATG 3 cut(s) 331, 439, 519
BstKTI GATC 6 cut(s) 8, 327, 358, 669, 754, 790
BstMBI GATC 6 cut(s) 5, 324, 355, 666, 751, 787
BstMWI GCNNNNNNNGC 3 cut(s) 397, 406, 639
BstNSI RCATGY 1 cut(s) 839
BstSFI CTRYAG 2 cut(s) 53, 653
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 36, 449
BtsCI GGATG 3 cut(s) 331, 439, 519
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 38, 411, 837
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 772
CviAII CATG 4 cut(s) 144, 414, 689, 836
DdeI CTNAG 3 cut(s) 20, 299, 560
DpnI GATC 6 cut(s) 7, 326, 357, 668, 753, 789
DpnII GATC 6 cut(s) 5, 324, 355, 666, 751, 787
Eam1104I CTCTTC 3 cut(s) 278, 365, 615
EarI CTCTTC 3 cut(s) 278, 365, 615
Eco147I AGGCCT 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 772
Eco57I CTGAAG 3 cut(s) 302, 407, 535
EcoO109I RGGNCCY 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 4 cut(s) 147, 417, 692, 839
FatI CATG 4 cut(s) 143, 413, 688, 835
FokI GGATG 3 cut(s) 318, 446, 506
FriOI GRGCYC 1 cut(s) 234
FspBI CTAG 5 cut(s) 42, 65, 602, 762, 813
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 36, 449
HapII CCGG 1 cut(s) 410
Hin1II CATG 4 cut(s) 147, 417, 692, 839
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 6 cut(s) 61, 71, 154, 260, 438, 473
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 195, 686
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 2 cut(s) 195, 686
HpyAV CCTTC 2 cut(s) 26, 762
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 7 cut(s) 55, 143, 290, 444, 543, 655, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 406, 639
HpyF3I CTNAG 3 cut(s) 20, 299, 560
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 4 cut(s) 147, 417, 692, 839
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Kzo9I GATC 6 cut(s) 5, 324, 355, 666, 751, 787
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 2 cut(s) 123, 658
LweI GCATC 1 cut(s) 629
MaeI CTAG 5 cut(s) 42, 65, 602, 762, 813
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 1 cut(s) 44
MalI GATC 6 cut(s) 7, 326, 357, 668, 753, 789
MboI GATC 6 cut(s) 5, 324, 355, 666, 751, 787
MboII GAAGA 7 cut(s) 36, 70, 295, 319, 352, 602, 777
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 364, 581, 699, 783
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 100, 488, 527, 555, 644, 753
Mph1103I ATGCAT 1 cut(s) 145
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 4 cut(s) 98, 293, 425, 794
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 397, 406, 639
NaeI GCCGGC 1 cut(s) 411
NdeII GATC 6 cut(s) 5, 324, 355, 666, 751, 787
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 4 cut(s) 147, 417, 692, 839
NlaIV GGNNCC 5 cut(s) 7, 119, 130, 383, 773
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 839
NspV TTCGAA 2 cut(s) 461, 533
PaeI GCATGC 1 cut(s) 839
PceI AGGCCT 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 61, 154, 260, 438, 473
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 772
PshBI ATTAAT 1 cut(s) 794
PsiI TTATAA 1 cut(s) 828
Psp5II RGGWCCY 1 cut(s) 772
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 5 cut(s) 7, 119, 130, 383, 773
PspPI GGNCC 1 cut(s) 772
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 2 cut(s) 57, 657
PsuI RGATCY 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 4 cut(s) 98, 293, 425, 794
Sau3AI GATC 6 cut(s) 5, 324, 355, 666, 751, 787
Sau96I GGNCC 1 cut(s) 772
SbfI CCTGCAGG 1 cut(s) 657
SchI GAGTC 1 cut(s) 80
SdaI CCTGCAGG 1 cut(s) 657
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 1 cut(s) 629
SfcI CTRYAG 2 cut(s) 53, 653
SfuI TTCGAA 2 cut(s) 461, 533
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 601
SphI GCATGC 1 cut(s) 839
Sse8387I CCTGCAGG 1 cut(s) 657
Sse9I AATT 4 cut(s) 364, 581, 699, 783
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 1 cut(s) 126
SspMI CTAG 5 cut(s) 42, 65, 602, 762, 813
StuI AGGCCT 1 cut(s) 36
TaiI ACGT 1 cut(s) 651
TaqI TCGA 7 cut(s) 152, 228, 263, 461, 533, 644, 754
TasI AATT 4 cut(s) 364, 581, 699, 783
TfiI GAWTC 5 cut(s) 61, 154, 260, 438, 473
Tru1I TTAA 4 cut(s) 98, 293, 425, 794
Tru9I TTAA 4 cut(s) 98, 293, 425, 794
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 202, 215
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 772
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 2 cut(s) 581, 699
XceI RCATGY 1 cut(s) 839
XspI CTAG 5 cut(s) 42, 65, 602, 762, 813
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.