Rh1DG408400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001452
Physical Location & Seq
Reverse (-)
62635755 .. 62636819
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG408400.1

Sequence Viewer

Length: 1065 bp
ATGACCTGCATTTGTCTCAATTGTGATTGCAGAATTATAGGATCGCTTAGCTTGAAGAGTAGTAGGCAAAAGAAAAAGAGAAGAACAATGGAATTAGACGGTGACTCCCATATAACTCTGAGAAGATGGGAAGACCTGCCTAGTGACATACTGCAGAAGATTCTAGTTGAGTCTGATTTTGATGACACCTCTGGTTTAACTTCTCTCATTTCTCAGCTCCATTGCGGTGCCGTTTGTAGTGCATGGCGTTCGATTCTCTCTGACCCCCAGCTTTGGAATACTCTTGACTTGTCCGCAATGAAATCTGATTTCATCTACATTGATGTCAAGCCCTATGTTTATGTTTCTGAAAAGTCGGATTCGATATTGAGTTGCTTTCTGAAGAGTGCATTAAGTCTTAGCAAGGGGAACATAACCACCTTGATCTTCCATCCCAACTTGTATCTGCCTAATGATCTCTTCAATTACACTGCTGAAAGGTCCCTGAAGCTGAAACGGCTGGTTATGCCGGCATGGCACAGATTAAATAGGGATGGAATCTGCAAGGCCATTGCTTGTTGGAAAGACCTTGAATCCCTCACAATAGAAGACATTGACAACAAAAGCTTCTCATACCTCATCCACCAGATTTCGAACAACTGCAAGAACTTCAGAGAGCTGAGGTTGATGGAAGCTTCTGAATTTCAGATAGCTTCAATACTAGTTGCTCTTCCAAAACTGAAAGTTTTGAGCCTCCGATGCTCGAACGTCCTGCAGGAGCATTTGATCGCTATATTGGATAGTTTACATGATTTGGAAATTCTGAATTTATCACATTGCCTTGTGATGGAAACTCTACCACCTCTACCAGATCGACCTCATCGACCACCTAGAAGAAGGGTCCTTACACAAATTGATCCATTAATTCTTGACAAGGCTTCTAGGTTAAAAAAATTTATAACTTGCATGCGATTTGATTCGTGCATCATGTGCCAGAGGGCCAGAAAAGACGAGGGGCACATGAAGTGGTATAGATATGAACCAGGGCTATGGAAAGAAGATGAGGTCAATTCCCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

354

Amino Acids

40.86

Weight (kDa)

8.44

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 43 - 97 3e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 938
Acc36I ACCTGC 2 cut(s) 14, 144
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 2 cut(s) 225, 294
AclWI GGATC 2 cut(s) 49, 890
AcsI RAATTY 4 cut(s) 680, 798, 805, 932
AcuI CTGAAG 3 cut(s) 401, 506, 634
AfiI CCNNNNNNNGG 2 cut(s) 273, 826
AgsI TTSAA 4 cut(s) 55, 463, 572, 696
AhlI ACTAGT 1 cut(s) 700
AjnI CCWGG 1 cut(s) 1021
AluBI AGCT 8 cut(s) 51, 217, 271, 490, 606, 658, 674, 692
AluI AGCT 8 cut(s) 51, 217, 271, 490, 606, 658, 674, 692
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 49, 890
AoxI GGCC 2 cut(s) 546, 978
ApoI RAATTY 4 cut(s) 680, 798, 805, 932
AseI ATTAAT 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 480, 880, 978
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 632
AvaII GGWCC 2 cut(s) 480, 880
BaeGI GKGCMC 1 cut(s) 999
BanI GGYRCC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BbsI GAAGAC 2 cut(s) 138, 594
BbvCI CCTCAGC 1 cut(s) 659
BccI CCATC 5 cut(s) 120, 438, 527, 661, 820
BceAI ACGGC 2 cut(s) 215, 512
BcgI CGANNNNNNTGC 4 cut(s) 231, 265, 733, 767
BciT130I CCWGG 1 cut(s) 1023
BcoDI GTCTC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 5 cut(s) 141, 164, 701, 870, 921
BfmI CTRYAG 2 cut(s) 152, 752
BfuAI ACCTGC 2 cut(s) 14, 144
BglI GCCNNNNNGGC 1 cut(s) 514
BlpI GCTNAGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 1023
Bme18I GGWCC 2 cut(s) 480, 880
BmgT120I GGNCC 3 cut(s) 480, 880, 978
BmiI GGNNCC 3 cut(s) 229, 482, 881
BmrFI CCNGG 1 cut(s) 1023
BmsI GCATC 2 cut(s) 728, 972
BpiI GAAGAC 2 cut(s) 138, 594
Bpu10I CCTNAGC 1 cut(s) 659
Bpu1102I GCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 1022
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 826
Bse118I RCCGGY 1 cut(s) 508
Bse3DI GCAATG 4 cut(s) 220, 303, 549, 814
BseBI CCWGG 1 cut(s) 1023
BseDI CCNNGG 1 cut(s) 1022
BseGI GGATG 3 cut(s) 430, 538, 618
BseLI CCNNNNNNNGG 2 cut(s) 273, 826
BseMI GCAATG 4 cut(s) 220, 303, 549, 814
BseMII CTCAG 3 cut(s) 110, 227, 650
BseSI GKGCMC 1 cut(s) 999
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 548, 980
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 2 cut(s) 273, 826
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 2 cut(s) 548, 980
Bsp119I TTCGAA 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 999
Bsp143I GATC 6 cut(s) 41, 423, 454, 765, 850, 895
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 2 cut(s) 225, 294
BspANI GGCC 2 cut(s) 548, 980
BspCNI CTCAG 3 cut(s) 111, 226, 651
BspLI GGNNCC 3 cut(s) 229, 482, 881
BspMAI CTGCAG 2 cut(s) 156, 756
BspMI ACCTGC 2 cut(s) 14, 144
BspPI GGATC 2 cut(s) 49, 890
BspQI GCTCTTC 1 cut(s) 714
BspT104I TTCGAA 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 4 cut(s) 220, 303, 549, 814
BsrFI RCCGGY 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 1022
BssMI GATC 6 cut(s) 41, 423, 454, 765, 850, 895
Bst2UI CCWGG 1 cut(s) 1023
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 4 cut(s) 50, 377, 464, 714
BstAPI GCANNNNNTGC 1 cut(s) 969
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 510, 947
BstDEI CTNAG 5 cut(s) 47, 119, 213, 398, 659
BstF5I GGATG 3 cut(s) 430, 538, 618
BstKTI GATC 6 cut(s) 44, 426, 457, 768, 853, 898
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 6 cut(s) 41, 423, 454, 765, 850, 895
BstMWI GCNNNNNNNGC 5 cut(s) 496, 505, 514, 738, 969
BstNI CCWGG 1 cut(s) 1023
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 1 cut(s) 1021
BstSFI CTRYAG 2 cut(s) 152, 752
BstSLI GKGCMC 1 cut(s) 999
BstV2I GAAGAC 2 cut(s) 138, 594
BstXI CCANNNNNNTGG 1 cut(s) 1029
BsuRI GGCC 2 cut(s) 548, 980
BtsCI GGATG 3 cut(s) 430, 538, 618
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 2 cut(s) 14, 144
Cac8I GCNNGC 2 cut(s) 510, 947
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 480, 880, 978
CviAII CATG 6 cut(s) 243, 513, 788, 946, 967, 1000
DdeI CTNAG 5 cut(s) 47, 119, 213, 398, 659
DpnI GATC 6 cut(s) 43, 425, 456, 767, 852, 897
DpnII GATC 6 cut(s) 41, 423, 454, 765, 850, 895
Eam1104I CTCTTC 4 cut(s) 50, 377, 464, 714
EarI CTCTTC 4 cut(s) 50, 377, 464, 714
Eco47I GGWCC 2 cut(s) 480, 880
Eco57I CTGAAG 3 cut(s) 401, 506, 634
EcoO109I RGGNCCY 2 cut(s) 480, 880
EcoRII CCWGG 1 cut(s) 1021
FaeI CATG 6 cut(s) 246, 516, 791, 949, 970, 1003
FaqI GGGAC 1 cut(s) 466
FatI CATG 6 cut(s) 242, 512, 787, 945, 966, 999
FokI GGATG 3 cut(s) 417, 545, 605
FspBI CTAG 5 cut(s) 141, 164, 701, 870, 921
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 548, 980
HapII CCGG 1 cut(s) 509
Hin1II CATG 6 cut(s) 246, 516, 791, 949, 970, 1003
HindIII AAGCTT 2 cut(s) 604, 672
HinfI GANTC 8 cut(s) 104, 160, 170, 253, 359, 537, 572, 956
HpaII CCGG 1 cut(s) 509
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 785
Hpy188III TCNNGA 2 cut(s) 284, 908
Hpy8I GTNNAC 1 cut(s) 785
HpyAV CCTTC 1 cut(s) 870
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 747
HpyF10VI GCNNNNNNNGC 5 cut(s) 496, 505, 514, 738, 969
HpyF3I CTNAG 5 cut(s) 47, 119, 213, 398, 659
HpySE526I ACGT 1 cut(s) 747
Hsp92II CATG 6 cut(s) 246, 516, 791, 949, 970, 1003
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Kzo9I GATC 6 cut(s) 41, 423, 454, 765, 850, 895
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 2 cut(s) 222, 757
LweI GCATC 2 cut(s) 728, 972
MaeI CTAG 5 cut(s) 141, 164, 701, 870, 921
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 2 cut(s) 101, 143
MalI GATC 6 cut(s) 43, 425, 456, 767, 852, 897
MboI GATC 6 cut(s) 41, 423, 454, 765, 850, 895
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 999
MlyI GAGTC 2 cut(s) 98, 179
MmeI TCCRAC 2 cut(s) 336, 539
MroNI GCCGGC 1 cut(s) 508
MseI TTAA 5 cut(s) 197, 392, 524, 902, 926
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 1023
MunI CAATTG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 1023
MwoI GCNNNNNNNGC 5 cut(s) 496, 505, 514, 738, 969
NaeI GCCGGC 1 cut(s) 510
NdeII GATC 6 cut(s) 41, 423, 454, 765, 850, 895
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 6 cut(s) 246, 516, 791, 949, 970, 1003
NlaIV GGNNCC 3 cut(s) 229, 482, 881
NmuCI GTSAC 2 cut(s) 101, 143
NspI RCATGY 1 cut(s) 949
NspV TTCGAA 1 cut(s) 632
PaeI GCATGC 1 cut(s) 949
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 859
PdiI GCCGGC 1 cut(s) 510
PfeI GAWTC 6 cut(s) 160, 253, 359, 537, 572, 956
PleI GAGTC 2 cut(s) 98, 178
PpsI GAGTC 2 cut(s) 98, 178
PpuMI RGGWCCY 2 cut(s) 480, 880
PshBI ATTAAT 1 cut(s) 902
PsiI TTATAA 1 cut(s) 938
Psp5II RGGWCCY 2 cut(s) 480, 880
Psp6I CCWGG 1 cut(s) 1021
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 1021
PspN4I GGNNCC 3 cut(s) 229, 482, 881
PspPI GGNCC 3 cut(s) 480, 880, 978
PspPPI RGGWCCY 2 cut(s) 480, 880
PstI CTGCAG 2 cut(s) 156, 756
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 5 cut(s) 197, 392, 524, 902, 926
Sau3AI GATC 6 cut(s) 41, 423, 454, 765, 850, 895
Sau96I GGNCC 3 cut(s) 480, 880, 978
SbfI CCTGCAGG 1 cut(s) 756
SchI GAGTC 2 cut(s) 98, 179
ScrFI CCNGG 1 cut(s) 1023
SdaI CCTGCAGG 1 cut(s) 756
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 2 cut(s) 728, 972
SfcI CTRYAG 2 cut(s) 152, 752
SfuI TTCGAA 1 cut(s) 632
SinI GGWCC 2 cut(s) 480, 880
SmiMI CAYNNNNRTG 1 cut(s) 225
SpeI ACTAGT 1 cut(s) 700
SphI GCATGC 1 cut(s) 949
Sse8387I CCTGCAGG 1 cut(s) 756
SsiI CCGC 2 cut(s) 225, 294
SspMI CTAG 5 cut(s) 141, 164, 701, 870, 921
StyD4I CCNGG 1 cut(s) 1021
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 750
TaqI TCGA 6 cut(s) 251, 362, 632, 743, 853, 862
TfiI GAWTC 6 cut(s) 160, 253, 359, 537, 572, 956
Tru1I TTAA 5 cut(s) 197, 392, 524, 902, 926
Tru9I TTAA 5 cut(s) 197, 392, 524, 902, 926
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 101, 143
Tsp45I GTSAC 2 cut(s) 101, 143
TspDTI ATGAA 4 cut(s) 301, 314, 1016, 1032
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 480, 880
VspI ATTAAT 1 cut(s) 902
XapI RAATTY 4 cut(s) 680, 798, 805, 932
XceI RCATGY 1 cut(s) 949
XspI CTAG 5 cut(s) 141, 164, 701, 870, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.