Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001452

Physical Location & Seq

Genomic Coordinates Reverse (-)

64175131 .. 64175520

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTAGCTTCTGAATTTCAGATAGCTTCAATACTAGTTGCTCTTCCAAAACTGAGAGTTTTGAGCCTCCGATGCTCGAACGTCCTGCAGGAGCATTTGATCGCTATATTGGATAGTTTACATGATTTGGAAATTCTGAATATATCACATTGCCTTTTGATGGAAACTCTACCACCTCTACCAGATCGACCACCTAGAAGAAGGGTCCTTACACAAATTGATCCATTAATTCTTGACAAGGCTTCTAGGTTAAAAAAATTTATAACTTGCATGCGATTTTTTTCGTGCATCATGTGCCAGAGGGCCAGAAAAGACAAGGGGTACATGAGGTGGTATAGAAATGAACCAGGGCTATGGAAAGAAGATGAGGTCAATTCCCTTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

129

Amino Acids

15.01

Weight (kDa)

9.14

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48880 AT3G48880 AT3G48880
fragaria_vesca	FvH4_7g29321 FvH4_7g29340 FvH4_7g29350 FvH4_7g29350
malus_domestica	MD01G1199600.v1.1 MD06G1077200.v1.1 MD07G1267400.v1.1 MD09G1056800.v1.1 MD14G1098500.v1.1
prunus_persica	Prupe.2G293100_v2.0.a1 Prupe.2G293200_v2.0.a1
pyrus_communis	pycom01g20960 pycom07g24510 pycom111g04760
rosa_chinensis	RchiOBHm_Chr1g0377061 RchiOBHm_Chr1g0377071 RchiOBHm_Chr1g0377081 RchiOBHm_Chr1g0377091 RchiOBHm_Chr1g0377111
rosa_laevigata	RLG00000026542 RLG00000026544 RLG00000026545 RLG00000026546
rosa_multiflora	Rmu_ssc0000155.1_g000019
rosa_roxburghii	Rroxscaffold_4G00281440 Rroxscaffold_4G00281450 Rroxscaffold_4G00281460
rosa_rugosa	Rorug01G0401300 Rorug01G0401300
rosa_samantha	Rh1AG418500 Rh1AG418600 Rh1AG418700 Rh1AG418800 Rh1AG418900 Rh1BG377600 Rh1BG377700 Rh1BG377800 Rh1BG378000 Rh1CG391600 Rh1CG391700 Rh1CG391800 Rh1CG392000 Rh1DG408300 Rh1DG408400 Rh1DG408500 Rh1DG408700
rosa_wichuraiana	Rw1G036720 Rw1G036730 Rw1G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	3 cut(s)	14, 132, 257
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	30
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	2 cut(s)	8, 26
AluI	AGCT	2 cut(s)	8, 26
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	3 cut(s)	14, 132, 257
AseI	ATTAAT	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	205, 303
AvaII	GGWCC	1 cut(s)	205
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
BccI	CCATC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	3 cut(s)	35, 195, 246
BfmI	CTRYAG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	205, 303
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	62, 297
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	99, 184, 220
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	3 cut(s)	99, 184, 220
Bst2UI	CCWGG	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	102, 187, 223
BstMBI	GATC	3 cut(s)	99, 184, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 294
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	205, 303
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	122, 271, 292, 325
CviJI	RGCY	6 cut(s)	8, 26, 66, 242, 305, 352
CviKI_1	RGCY	6 cut(s)	8, 26, 66, 242, 305, 352
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	101, 186, 222
DpnII	GATC	3 cut(s)	99, 184, 220
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	346
FaeI	CATG	4 cut(s)	125, 274, 295, 328
FaiI	YATR	9 cut(s)	107, 123, 143, 263, 272, 293, 326, 336, 355
FatI	CATG	4 cut(s)	121, 270, 291, 324
FspBI	CTAG	3 cut(s)	35, 195, 246
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	125, 274, 295, 328
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	4 cut(s)	13, 21, 71, 138
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	88, 270, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 294
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	125, 274, 295, 328
Kzo9I	GATC	3 cut(s)	99, 184, 220
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	91, 388
LpnPI	CCDG	7 cut(s)	74, 98, 195, 311, 319, 333, 360
LweI	GCATC	2 cut(s)	62, 297
MaeI	CTAG	3 cut(s)	35, 195, 246
MaeII	ACGT	1 cut(s)	81
MalI	GATC	3 cut(s)	101, 186, 222
MboI	GATC	3 cut(s)	99, 184, 220
MboII	GAAGA	3 cut(s)	35, 210, 374
MluCI	AATT	6 cut(s)	14, 132, 216, 228, 257, 373
MnlI	CCTC	5 cut(s)	77, 186, 294, 321, 361
MseI	TTAA	2 cut(s)	227, 251
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	72, 294
NdeII	GATC	3 cut(s)	99, 184, 220
NlaIII	CATG	4 cut(s)	125, 274, 295, 328
NlaIV	GGNNCC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	205
PshBI	ATTAAT	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	205, 303
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	227, 251
Sau3AI	GATC	3 cut(s)	99, 184, 220
Sau96I	GGNCC	2 cut(s)	205, 303
SbfI	CCTGCAGG	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	348
SdaI	CCTGCAGG	1 cut(s)	90
SetI	ASST	8 cut(s)	10, 28, 84, 178, 196, 251, 332, 372
SfaNI	GCATC	2 cut(s)	62, 297
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	34
SphI	GCATGC	1 cut(s)	274
Sse8387I	CCTGCAGG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	14, 132, 216, 228, 257, 373
SspMI	CTAG	3 cut(s)	35, 195, 246
StyD4I	CCNGG	1 cut(s)	346
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	77, 187
TasI	AATT	6 cut(s)	14, 132, 216, 228, 257, 373
Tru1I	TTAA	2 cut(s)	227, 251
Tru9I	TTAA	2 cut(s)	227, 251
TspDTI	ATGAA	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	3 cut(s)	14, 132, 257
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	3 cut(s)	35, 195, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.