pycom111g04760

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
2886072 .. 2886624
553 bp
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UTR
Exon/CDS
Intron
pycom111g04760.1

Sequence Viewer

Length: 501 bp
ATGGAAGATGTTGATTTTCGAAGATGGGGAGACATGGAACCTGACATATTGAGTGAGATTTTTATGCGTCTCGGCAGAATCTCAGATTTAACTTCAGCCATTGTTTATGTTCGTTGCAGTGCCGTTTGCAGCACATGGCGTTCGGTTATTCTTGACTACTCCTCTCGAGTTTTTACTACACTTGATTTGTTAAGGATCAAAATAGATTTCATCCCAAGCCAATATAAACCCTATGTTTATGTTACAAGCAAGTCTGATTTGGCACTGAGTCATGTTTTGAAGGTTTCATTGGGTTTCAGTATGGGAAACATAACGAGCTTATTGTTTAATCGCAATTTATATGCCCCCGACCATCTCTTAATTTATGAAGCTGAAAGATGCCCTAAGCTGAGACGATTGGTTTTGCCAGATTGGAACAGAATAACCAAGACCGGAATGTGCAAGATCCTCAATACCTCATGGAGGAGATTTCTAAAAACTGCAAGAATTTCAGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

19.31

Weight (kDa)

9.54

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 203, 439
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 3 cut(s) 318, 371, 388
AluI AGCT 3 cut(s) 318, 371, 388
Alw26I GTCTC 3 cut(s) 24, 74, 385
AlwI GGATC 2 cut(s) 203, 439
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 486
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 18, 360
BceAI ACGGC 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 24, 74, 385
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 96, 257, 380
BseRI GAGGAG 2 cut(s) 151, 478
BseXI GCAGC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 3 cut(s) 24, 74, 385
BsmBI CGTCTC 2 cut(s) 74, 385
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 19
Bsp143I GATC 2 cut(s) 195, 444
BspCNI CTCAG 3 cut(s) 95, 258, 381
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 203, 439
BspT104I TTCGAA 1 cut(s) 19
BssMI GATC 2 cut(s) 195, 444
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 82, 266, 384, 389
BstENI CCTNNNNNAGG 1 cut(s) 460
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 2 cut(s) 198, 447
BstMAI GTCTC 3 cut(s) 24, 74, 385
BstMBI GATC 2 cut(s) 195, 444
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 124, 263
CseI GACGC 1 cut(s) 56
CviAII CATG 4 cut(s) 34, 135, 272, 459
CviJI RGCY 5 cut(s) 98, 219, 318, 371, 388
CviKI_1 RGCY 5 cut(s) 98, 219, 318, 371, 388
DdeI CTNAG 4 cut(s) 82, 266, 384, 389
DpnI GATC 2 cut(s) 197, 446
DpnII GATC 2 cut(s) 195, 444
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 460
Esp3I CGTCTC 2 cut(s) 74, 385
FaeI CATG 4 cut(s) 37, 138, 275, 462
FatI CATG 4 cut(s) 33, 134, 271, 458
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 37, 138, 275, 462
HinfI GANTC 2 cut(s) 78, 268
HpaII CCGG 1 cut(s) 432
Hpy188I TCNGA 2 cut(s) 85, 256
Hpy188III TCNNGA 2 cut(s) 152, 165
HpyAV CCTTC 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 117, 129, 441, 482
HpyF3I CTNAG 4 cut(s) 82, 266, 384, 389
Hsp92II CATG 4 cut(s) 37, 138, 275, 462
Kzo9I GATC 2 cut(s) 195, 444
LpnPI CCDG 4 cut(s) 54, 420, 445, 477
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 197, 446
MboI GATC 2 cut(s) 195, 444
MboII GAAGA 2 cut(s) 17, 33
MflI RGATCY 1 cut(s) 444
MluCI AATT 4 cut(s) 334, 360, 486, 496
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 4 cut(s) 172, 456, 458, 466
MseI TTAA 5 cut(s) 89, 191, 327, 359, 499
MspI CCGG 1 cut(s) 432
NdeII GATC 2 cut(s) 195, 444
NlaIII CATG 4 cut(s) 37, 138, 275, 462
NlaIV GGNNCC 1 cut(s) 39
NmeAIII GCCGAG 1 cut(s) 51
NspV TTCGAA 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 165
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 444
SaqAI TTAA 5 cut(s) 89, 191, 327, 359, 499
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 195, 444
SchI GAGTC 1 cut(s) 277
SetI ASST 6 cut(s) 43, 285, 320, 373, 390, 458
SfaNI GCATC 1 cut(s) 368
Sfr274I CTCGAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 4 cut(s) 334, 360, 486, 496
TaqI TCGA 2 cut(s) 19, 166
TasI AATT 4 cut(s) 334, 360, 486, 496
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 5 cut(s) 89, 191, 327, 359, 499
Tru9I TTAA 5 cut(s) 89, 191, 327, 359, 499
TscAI CASTG 2 cut(s) 124, 270
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 199, 276, 381
TspRI CASTG 2 cut(s) 124, 270
XagI CCTNNNNNAGG 1 cut(s) 460
XapI RAATTY 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.