RLG00000026542

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001452
Physical Location & Seq
Forward (+)
3709518 .. 3711894
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026542

Sequence Viewer

Length: 1179 bp
ATGACTGATAAACCCTCCTACAGAACCCGAACCGAAAAGCATTGCAATGGAGTAAGGTTGTCCGGGGAAATTTGGAGATCTGGTGAAATGGAAGACTGTGTCTCTGCTGTGAGGAGATGGGAGGACTTGGAGACGGATATTTTGGTGAAGATTTTTCAGTCGTTTGATGTGTTTGAGTTAACTTCCGGAATAGCTCATGTTTGTAGTGGGTGGCGTTTGGCGTGCTGTGATCCTCTGCTGTGGAAGACTTTGGATTTGTCGATGATGAAATCTAATTTCATCAAAATCCCGTCAGAGCCTTATGTATATGTGGATGACCCGTCCGATAAGCTTTTGTCTCGTTTGTTGAAGATTTCAATGAGTCTCAGCAGGGGAAACATCACGACCTTGATTTTTCATTTCAACTTATATGTGAGCGATGATCAGCTGACTTATACTGCTGAAAGGTGCCCAAAGCTGAAACGACTAGTTTTGCCGGGTTGGAACAGAATAAAAAAGACAGGAATCTGCAAGGCCATTTCCTGCTGGAAGGATCTTGAATCCTTGACAATGCCTAGCATAGCAAATCCCCCATACTTCATAGAAGAGATTGCCAAGAACTGCAGGAATTTCAGAGAACTAAAGATCATGGGTCCTTGTGATATCTTTTTTGCTTCAACCCTAGTTGCATATCTTCCTAAGCTGAAGGTTTTAAGCCTCCGGTGCTCAATGCTCCTAAGGGAGGCTCTACTCATGATCTTGGAGGGCCTACCACAGCTAGAAGTTCTGAATATTTCGCATTGCCTTCTTTTCGACCTCTCTCCATCGCCTACATCTAAAAAAATTTTGAGAGAGATCGATCCTTTTATCCATGACAAGGCCTCTCGACTACGCAGGTTTTTGACTTGCAGTCAAGACACCTGCGTGATGTGCCAAAGGACGAAAACCGACGAGGGGCTCTTGAGGTGGTACAAGTATGAAGAAGGGCTATGGAAAGAAGACGAGTTGCTTCCGCTGCTTCATTTTAGTGCCGTTTACAGTGCTTGGCGTTCGGTTCTCTGTGACCCTCGGCTTTGGAAGACACTCGATTTGTCAACCATGAAGTCCGATTTCATTCCAACCACGTTACTGCCTTATGATCAAGATCCGAAGAAGCACTGTATCTGTTTTGAAGACTCGGTTGAATCTCAGCGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

393

Amino Acids

45.4

Weight (kDa)

8.03

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 45 - 86 1.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 2 cut(s) 864, 908
AccB1I GGYRCC 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 2 cut(s) 992, 1171
AclWI GGATC 4 cut(s) 224, 540, 833, 1118
AcsI RAATTY 3 cut(s) 69, 607, 822
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 3 cut(s) 721, 856, 933
AgsI TTSAA 7 cut(s) 349, 357, 403, 539, 657, 1151, 1163
AhdI GACNNNNNGTC 1 cut(s) 888
AhlI ACTAGT 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 6 cut(s) 194, 331, 427, 457, 682, 757
AluI AGCT 6 cut(s) 194, 331, 427, 457, 682, 757
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 4 cut(s) 106, 125, 342, 368
AlwI GGATC 4 cut(s) 224, 540, 833, 1118
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 3 cut(s) 513, 745, 858
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 3 cut(s) 69, 607, 822
ArsI GACNNNNNNTTYG 6 cut(s) 124, 156, 238, 270, 1051, 1083
AspS9I GGNCC 2 cut(s) 632, 745
AsuC2I CCSGG 2 cut(s) 64, 477
AsuHPI GGTGA 2 cut(s) 95, 157
AvaII GGWCC 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 939
BbsI GAAGAC 5 cut(s) 99, 251, 984, 1064, 1158
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 981
BccI CCATC 2 cut(s) 111, 811
BceAI ACGGC 1 cut(s) 995
BclI TGATCA 2 cut(s) 421, 1117
BcnI CCSGG 2 cut(s) 64, 477
BcoDI GTCTC 4 cut(s) 106, 125, 342, 368
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 4 cut(s) 467, 555, 662, 758
BfmI CTRYAG 2 cut(s) 19, 601
BfuAI ACCTGC 2 cut(s) 864, 908
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 995
BlsI GCNGC 1 cut(s) 996
Bme1390I CCNGG 2 cut(s) 64, 477
Bme18I GGWCC 1 cut(s) 632
BmeRI GACNNNNNGTC 1 cut(s) 888
BmgT120I GGNCC 2 cut(s) 632, 745
BmiI GGNNCC 2 cut(s) 449, 633
BmrFI CCNGG 2 cut(s) 64, 477
BpiI GAAGAC 5 cut(s) 99, 251, 984, 1064, 1158
Bpu10I CCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 961
BpuMI CCSGG 2 cut(s) 64, 477
Bsa29I ATCGAT 1 cut(s) 837
BsaBI GATNNNNATC 1 cut(s) 1122
BsaJI CCNNGG 2 cut(s) 63, 1046
BsaWI WCCGGW 2 cut(s) 185, 699
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 856, 933
Bse21I CCTNAGG 1 cut(s) 716
Bse3DI GCAATG 3 cut(s) 40, 52, 778
Bse8I GATNNNNATC 1 cut(s) 1122
BseAI TCCGGA 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 2 cut(s) 63, 1046
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 3 cut(s) 721, 856, 933
BseMI GCAATG 3 cut(s) 40, 52, 778
BseMII CTCAG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 1 cut(s) 981
BshFI GGCC 3 cut(s) 515, 747, 860
BshNI GGYRCC 1 cut(s) 447
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 4 cut(s) 63, 186, 476, 700
BslI CCNNNNNNNGG 3 cut(s) 721, 856, 933
BsmAI GTCTC 4 cut(s) 106, 125, 342, 368
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 515, 747, 860
Bsp1286I GDGCHC 3 cut(s) 452, 707, 939
Bsp13I TCCGGA 1 cut(s) 185
BspACI CCGC 2 cut(s) 992, 1171
BspANI GGCC 3 cut(s) 515, 747, 860
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 837
BspEI TCCGGA 1 cut(s) 185
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 449, 633
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 2 cut(s) 864, 908
BspPI GGATC 4 cut(s) 224, 540, 833, 1118
BspT107I GGYRCC 1 cut(s) 447
BsrDI GCAATG 3 cut(s) 40, 52, 778
BssECI CCNNGG 2 cut(s) 63, 1046
Bst4CI ACNGT 3 cut(s) 98, 1019, 1139
Bst6I CTCTTC 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 4 cut(s) 365, 678, 716, 1167
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 1 cut(s) 319
BstMAI GTCTC 4 cut(s) 106, 125, 342, 368
BstMWI GCNNNNNNNGC 3 cut(s) 702, 909, 994
BstSCI CCNGG 2 cut(s) 62, 475
BstSFI CTRYAG 2 cut(s) 19, 601
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 981
BstV2I GAAGAC 5 cut(s) 99, 251, 984, 1064, 1158
BstX2I RGATCY 3 cut(s) 77, 532, 1123
BstYI RGATCY 3 cut(s) 77, 532, 1123
Bsu15I ATCGAT 1 cut(s) 837
Bsu36I CCTNAGG 1 cut(s) 716
BsuRI GGCC 3 cut(s) 515, 747, 860
BsuTUI ATCGAT 1 cut(s) 837
BtgZI GCGATG 2 cut(s) 432, 789
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 1024, 1135
BveI ACCTGC 2 cut(s) 864, 908
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 632, 745
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 1 cut(s) 949
CviAII CATG 5 cut(s) 197, 628, 733, 851, 1078
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 4 cut(s) 365, 678, 716, 1167
DriI GACNNNNNGTC 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 579
Eam1105I GACNNNNNGTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 579
Eco147I AGGCCT 1 cut(s) 860
Eco24I GRGCYC 1 cut(s) 939
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 704
Eco81I CCTNAGG 1 cut(s) 716
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoO109I RGGNCCY 2 cut(s) 632, 745
EcoRV GATATC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 5 cut(s) 200, 631, 736, 854, 1081
FatI CATG 5 cut(s) 196, 627, 732, 850, 1077
FauI CCCGC 1 cut(s) 1164
FbaI TGATCA 2 cut(s) 421, 1117
Fnu4HI GCNGC 1 cut(s) 995
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 1 cut(s) 995
FspBI CTAG 4 cut(s) 467, 555, 662, 758
GluI GCNGC 1 cut(s) 995
HaeIII GGCC 3 cut(s) 515, 747, 860
HapII CCGG 4 cut(s) 63, 186, 476, 700
Hin1II CATG 5 cut(s) 200, 631, 736, 854, 1081
HincII GTYRAC 2 cut(s) 180, 1074
HindII GTYRAC 2 cut(s) 180, 1074
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 5 cut(s) 361, 504, 539, 1154, 1163
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 4 cut(s) 63, 186, 476, 700
HphI GGTGA 2 cut(s) 95, 157
Hpy166II GTNNAC 3 cut(s) 180, 1015, 1074
Hpy188I TCNGA 6 cut(s) 295, 325, 614, 768, 1087, 1128
Hpy188III TCNNGA 8 cut(s) 186, 382, 536, 733, 864, 893, 940, 1121
Hpy8I GTNNAC 3 cut(s) 180, 1015, 1074
Hpy99I CGWCG 1 cut(s) 932
HpyAV CCTTC 4 cut(s) 523, 679, 794, 956
HpyCH4III ACNGT 3 cut(s) 98, 1019, 1139
HpyCH4IV ACGT 1 cut(s) 1103
HpyCH4V TGCA 5 cut(s) 45, 510, 603, 668, 888
HpyF10VI GCNNNNNNNGC 3 cut(s) 702, 909, 994
HpyF3I CTNAG 4 cut(s) 365, 678, 716, 1167
HpySE526I ACGT 1 cut(s) 1103
Hsp92II CATG 5 cut(s) 200, 631, 736, 854, 1081
Kpn2I TCCGGA 1 cut(s) 185
Ksp22I TGATCA 2 cut(s) 421, 1117
KspAI GTTAAC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 717
Lsp1109I GCAGC 1 cut(s) 981
MaeI CTAG 4 cut(s) 467, 555, 662, 758
MaeII ACGT 1 cut(s) 1103
MaeIII GTNAC 2 cut(s) 1040, 1104
MflI RGATCY 3 cut(s) 77, 532, 1123
MhlI GDGCHC 3 cut(s) 452, 707, 939
MluCI AATT 4 cut(s) 69, 274, 607, 822
MlyI GAGTC 2 cut(s) 370, 1148
MmeI TCCRAC 2 cut(s) 461, 1121
MroI TCCGGA 1 cut(s) 185
MseI TTAA 2 cut(s) 179, 692
MslI CAYNNNNRTG 3 cut(s) 45, 902, 1005
MspA1I CMGCKG 3 cut(s) 427, 994, 1171
MspI CCGG 4 cut(s) 63, 186, 476, 700
MspR9I CCNGG 2 cut(s) 64, 477
MwoI GCNNNNNNNGC 3 cut(s) 702, 909, 994
NciI CCSGG 2 cut(s) 64, 477
NlaIII CATG 5 cut(s) 200, 631, 736, 854, 1081
NlaIV GGNNCC 2 cut(s) 449, 633
NmeAIII GCCGAG 1 cut(s) 1027
NmuCI GTSAC 1 cut(s) 1040
OliI CACNNNNGTG 1 cut(s) 902
PagI TCATGA 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 908
PceI AGGCCT 1 cut(s) 860
PfeI GAWTC 3 cut(s) 504, 539, 1163
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 996
PleI GAGTC 2 cut(s) 369, 1148
PpsI GAGTC 2 cut(s) 369, 1148
PpuMI RGGWCCY 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 449, 633
PspPI GGNCC 2 cut(s) 632, 745
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 3 cut(s) 77, 532, 1123
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 427
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 3 cut(s) 45, 902, 1005
SaqAI TTAA 2 cut(s) 179, 692
SatI GCNGC 1 cut(s) 995
Sau96I GGNCC 2 cut(s) 632, 745
SchI GAGTC 2 cut(s) 370, 1148
ScrFI CCNGG 2 cut(s) 64, 477
SduI GDGCHC 3 cut(s) 452, 707, 939
SfcI CTRYAG 2 cut(s) 19, 601
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 3 cut(s) 45, 902, 1005
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 4 cut(s) 69, 274, 607, 822
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 2 cut(s) 992, 1171
SspI AATATT 1 cut(s) 772
SspMI CTAG 4 cut(s) 467, 555, 662, 758
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 2 cut(s) 62, 475
TaaI ACNGT 3 cut(s) 98, 1019, 1139
TaiI ACGT 1 cut(s) 1106
TaqI TCGA 5 cut(s) 260, 792, 837, 865, 1065
TasI AATT 4 cut(s) 69, 274, 607, 822
TfiI GAWTC 3 cut(s) 504, 539, 1163
Tru1I TTAA 2 cut(s) 179, 692
Tru9I TTAA 2 cut(s) 179, 692
TscAI CASTG 2 cut(s) 1024, 1142
TseFI GTSAC 1 cut(s) 1040
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 1 cut(s) 1040
TspDTI ATGAA 8 cut(s) 268, 281, 386, 568, 972, 989, 1081, 1094
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 1024, 1142
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 632
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 3 cut(s) 69, 607, 822
XspI CTAG 4 cut(s) 467, 555, 662, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.